Wall clock time and date at job start Tue Mar 31 2020 00:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46973 * 2 1 4 4 C 1.52998 * 109.47760 * 120.00292 * 2 1 3 5 5 N 1.46505 * 109.46658 * 305.00396 * 4 2 1 6 6 C 1.35310 * 125.86763 * 125.29510 * 5 4 2 7 7 C 1.35348 * 106.17503 * 180.17814 * 6 5 4 8 8 C 1.50700 * 126.75241 * 179.84708 * 7 6 5 9 9 C 1.50702 * 109.46869 * 124.71667 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 7 6 5 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 7 6 19 19 C 1.53004 * 109.47135 * 240.00581 * 2 1 3 20 20 F 1.39895 * 109.46881 * 299.99333 * 19 2 1 21 21 F 1.39900 * 109.47010 * 59.99644 * 19 2 1 22 22 F 1.39898 * 109.47104 * 179.97438 * 19 2 1 23 23 H 1.08999 * 109.46906 * 299.99173 * 1 2 3 24 24 H 1.08990 * 109.47548 * 59.99788 * 1 2 3 25 25 H 1.09004 * 109.46413 * 179.97438 * 1 2 3 26 26 H 0.96699 * 114.00201 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47517 * 185.00330 * 4 2 1 28 28 H 1.08999 * 109.47139 * 64.99983 * 4 2 1 29 29 H 1.08000 * 126.91429 * 0.03609 * 6 5 4 30 30 H 1.09004 * 109.47210 * 4.71960 * 8 7 6 31 31 H 1.08994 * 109.47551 * 244.71612 * 8 7 6 32 32 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.4559 -0.1037 2.4423 6 6 0.7620 -0.7475 3.4092 7 6 0.4075 0.1971 4.3114 8 6 -0.3844 -0.0157 5.5758 9 6 0.3955 0.5132 6.7519 10 1 1.3671 0.9593 6.5991 11 6 -0.1342 0.4334 8.0224 12 7 0.5439 0.8999 9.0481 13 14 -1.8151 -0.3375 8.2868 14 1 -1.6590 -1.7943 8.5289 15 1 -2.4692 0.2923 9.4619 16 1 -2.6533 -0.1233 7.0799 17 7 0.9032 1.3557 3.8629 18 7 1.5189 1.1436 2.7536 19 6 2.0400 -0.7211 -1.2493 20 9 1.5738 -2.0401 -1.2494 21 9 1.5736 -0.0616 -2.3915 22 9 3.4390 -0.7206 -1.2496 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 2.9703 1.4238 0.0004 27 1 3.1265 -0.6443 1.2950 28 1 1.7518 -1.7715 1.2055 29 1 0.5346 -1.8025 3.4513 30 1 -0.5707 -1.0809 5.7129 31 1 -1.3347 0.5129 5.5027 32 1 0.1714 0.8434 9.9419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603257969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:13 Heat of formation + Delta-G solvation = -126.954194 kcal Electronic energy + Delta-G solvation = -22182.522855 eV Core-core repulsion = 18150.857710 eV Total energy + Delta-G solvation = -4031.665145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.30988 -48.80712 -48.75966 -44.10827 -39.46859 -35.94172 -35.02532 -33.27471 -32.73407 -29.92735 -28.60004 -27.35650 -25.09937 -23.32311 -22.46854 -21.45027 -20.06175 -19.57452 -19.46713 -18.88264 -18.02088 -17.74625 -16.58365 -16.22450 -16.20827 -15.60885 -15.56948 -15.33824 -15.19244 -15.03141 -14.92836 -14.88213 -14.72185 -14.20419 -13.96838 -13.65456 -13.59735 -13.24358 -12.90115 -12.62940 -12.41669 -12.31836 -11.90571 -11.71802 -11.60532 -11.39284 -10.84690 -10.71246 -9.84570 -8.22337 -6.27551 0.71784 1.11954 1.42701 1.47451 1.58574 1.65779 1.78355 2.42941 2.44825 2.50482 2.67290 3.01739 3.12198 3.25055 3.41964 3.68890 3.88786 4.10450 4.25555 4.42639 4.44321 4.50131 4.70143 4.93324 5.07535 5.34250 5.39359 5.64370 5.76698 6.29905 6.34293 6.78179 7.34368 7.73695 8.95546 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.042777 B = 0.003816 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.399095 B = 7336.522047 C = 7518.094231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 O -0.526 6.526 4 C 0.082 3.918 5 N -0.283 5.283 6 C -0.046 4.046 7 C -0.008 4.008 8 C 0.066 3.934 9 C -0.518 4.518 10 H 0.017 0.983 11 C 0.001 3.999 12 N -0.956 5.956 13 Si 0.959 3.041 14 H -0.255 1.255 15 H -0.289 1.289 16 H -0.241 1.241 17 N -0.312 5.312 18 N -0.095 5.095 19 C 0.442 3.558 20 F -0.170 7.170 21 F -0.176 7.176 22 F -0.177 7.177 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.399 0.601 27 H 0.130 0.870 28 H 0.162 0.838 29 H 0.235 0.765 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -10.739 -24.565 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 O -0.334 6.334 4 C -0.040 4.040 5 N -0.078 5.078 6 C -0.195 4.195 7 C -0.145 4.145 8 C 0.027 3.973 9 C -0.556 4.556 10 H 0.036 0.964 11 C -0.195 4.195 12 N -0.597 5.597 13 Si 0.781 3.219 14 H -0.179 1.179 15 H -0.216 1.216 16 H -0.164 1.164 17 N -0.179 5.179 18 N -0.073 5.073 19 C 0.386 3.614 20 F -0.151 7.151 21 F -0.158 7.158 22 F -0.159 7.159 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.131 0.869 26 H 0.251 0.749 27 H 0.148 0.852 28 H 0.180 0.820 29 H 0.251 0.749 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.893 -9.201 -24.873 26.535 hybrid contribution 0.206 -0.941 0.691 1.185 sum 1.099 -10.142 -24.182 26.246 Atomic orbital electron populations 1.21914 0.88664 1.05596 1.04540 1.22534 0.98911 0.84651 0.88988 1.86846 1.29245 1.21522 1.95814 1.23055 1.01527 0.99889 0.79495 1.47103 1.36403 1.06512 1.17787 1.23853 1.02690 1.02181 0.90800 1.22388 1.03192 0.89591 0.99370 1.17978 0.93934 0.98299 0.87115 1.21154 1.03697 1.39039 0.91731 0.96410 1.26086 1.02490 0.95692 0.95195 1.70094 1.40933 1.48734 0.99974 0.85542 0.78560 0.79211 0.78594 1.17940 1.21558 1.16434 1.75077 1.11870 1.26558 1.04405 1.78270 1.19917 0.98486 1.10656 1.21059 0.75763 0.77969 0.86563 1.93220 1.88312 1.36895 1.96713 1.93214 1.88383 1.80803 1.53355 1.93217 1.29581 1.96302 1.96783 0.92157 0.89716 0.86922 0.74937 0.85203 0.81987 0.74860 0.92027 0.94862 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.39 71.98 0.60 -1.90 16 2 C 0.09 1.45 0.63 -10.79 -0.01 1.44 16 3 O -0.53 -10.35 11.95 -148.98 -1.78 -12.13 16 4 C 0.08 1.18 5.40 86.38 0.47 1.65 16 5 N -0.28 -7.58 2.47 -347.73 -0.86 -8.44 16 6 C -0.05 -1.34 11.49 83.49 0.96 -0.38 16 7 C -0.01 -0.33 6.44 41.60 0.27 -0.06 16 8 C 0.07 3.06 4.62 29.10 0.13 3.20 16 9 C -0.52 -30.76 9.64 25.60 0.25 -30.52 16 10 H 0.02 1.21 7.98 -2.91 -0.02 1.19 16 11 C 0.00 0.08 5.47 84.66 0.46 0.54 16 12 N -0.96 -61.33 13.96 21.45 0.30 -61.03 16 13 Si 0.96 42.99 27.47 68.60 1.88 44.88 16 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 15 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 16 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 17 N -0.31 -14.56 12.40 -48.60 -0.60 -15.16 16 18 N -0.09 -3.53 12.04 37.02 0.45 -3.09 16 19 C 0.44 5.87 2.38 71.98 0.17 6.04 16 20 F -0.17 -2.02 16.19 44.97 0.73 -1.29 16 21 F -0.18 -2.94 16.74 44.97 0.75 -2.19 16 22 F -0.18 -2.28 16.51 44.97 0.74 -1.54 16 23 H 0.06 1.42 7.43 -2.39 -0.02 1.40 16 24 H 0.08 1.39 7.80 -2.39 -0.02 1.37 16 25 H 0.11 1.24 7.80 -2.38 -0.02 1.22 16 26 H 0.40 5.21 8.69 -74.06 -0.64 4.57 16 27 H 0.13 1.46 7.94 -2.39 -0.02 1.44 16 28 H 0.16 1.10 7.59 -2.39 -0.02 1.08 16 29 H 0.24 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.06 2.47 7.56 -2.38 -0.02 2.45 16 31 H 0.03 1.56 7.19 -2.39 -0.02 1.54 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -81.29 291.30 5.39 -75.89 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 0.48 Total: 4.09 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 3.31 Total: -19.99 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -0.72 Total: -87.73 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.78 Total: -12.13 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 2.22 Total: -5.02 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Total: -81.29 5.39 -75.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603257969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.060 kcal (2) G-P(sol) polarization free energy of solvation -81.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds