Wall clock time and date at job start Tue Mar 31 2020 00:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39050 * 119.99860 * 2 1 4 4 C 1.39241 * 119.92905 * 5.69601 * 3 2 1 5 5 C 1.37597 * 120.06490 * 180.30250 * 4 3 2 6 6 C 1.39813 * 119.92844 * 359.41884 * 5 4 3 7 7 C 1.47517 * 120.06437 * 180.25339 * 6 5 4 8 8 O 1.21599 * 119.99919 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00180 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47162 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00076 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99904 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99773 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47383 * 90.00160 * 15 13 11 17 17 H 1.48502 * 109.46786 * 210.00194 * 15 13 11 18 18 H 1.48499 * 109.47051 * 329.99650 * 15 13 11 19 19 C 1.39779 * 119.86395 * 0.28605 * 6 5 4 20 20 C 1.37628 * 119.93191 * 359.97438 * 19 6 5 21 21 N 1.48020 * 119.96809 * 180.02562 * 20 19 6 22 22 O 1.21799 * 119.99672 * 353.84194 * 21 20 19 23 23 O 1.21797 * 119.99892 * 173.83986 * 21 20 19 24 24 H 1.08997 * 109.46974 * 59.99759 * 1 2 3 25 25 H 1.08999 * 109.46534 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47045 * 299.99512 * 1 2 3 27 27 H 0.96994 * 120.00064 * 179.97438 * 2 1 3 28 28 H 1.08001 * 119.97020 * 0.02562 * 4 3 2 29 29 H 1.07994 * 120.03227 * 179.70449 * 5 4 3 30 30 H 0.96995 * 120.00389 * 359.97438 * 9 7 6 31 31 H 1.08997 * 109.46987 * 300.00038 * 10 9 7 32 32 H 1.09007 * 109.47050 * 59.99924 * 10 9 7 33 33 H 0.96994 * 119.99974 * 179.97438 * 14 13 11 34 34 H 1.08004 * 120.03362 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1603 1.2042 0.0000 4 6 1.4677 2.4062 0.1198 5 6 2.1523 3.5998 0.1138 6 6 3.5458 3.6041 -0.0004 7 6 4.2832 4.8818 -0.0014 8 8 5.4951 4.8842 -0.1013 9 7 3.6138 6.0463 0.1083 10 6 4.3462 7.3151 0.1078 11 6 3.3724 8.4574 0.2408 12 1 2.3137 8.2582 0.3185 13 6 3.8328 9.7569 0.2635 14 7 2.9829 10.7537 0.3791 15 14 5.6639 10.1014 0.1299 16 1 6.0353 10.2573 -1.2994 17 1 5.9873 11.3507 0.8646 18 1 6.4246 8.9700 0.7186 19 6 4.2386 2.3955 -0.1143 20 6 3.5477 1.2052 -0.1131 21 7 4.2805 -0.0752 -0.2331 22 8 5.4799 -0.0728 -0.4451 23 8 3.6842 -1.1312 -0.1197 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9500 -0.8400 0.0004 28 1 0.3917 2.4020 0.2129 29 1 1.6142 4.5320 0.2020 30 1 2.6471 6.0445 0.1876 31 1 5.0436 7.3324 0.9453 32 1 4.8982 7.4157 -0.8268 33 1 3.3068 11.6678 0.3954 34 1 5.3149 2.3957 -0.2031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726263298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:30 Heat of formation + Delta-G solvation = -27.900006 kcal Electronic energy + Delta-G solvation = -20840.335258 eV Core-core repulsion = 17354.822165 eV Total energy + Delta-G solvation = -3485.513093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.44433 -41.34414 -39.94945 -37.99603 -36.62001 -36.27295 -34.50177 -33.17643 -31.56606 -29.90463 -27.89571 -27.06638 -24.81109 -23.94641 -23.09290 -21.93109 -20.52949 -19.86645 -19.03292 -18.77264 -18.57365 -17.95161 -17.40299 -16.71804 -16.31490 -16.17767 -15.52822 -15.50562 -15.17515 -14.92905 -14.39259 -14.29700 -14.11615 -13.67608 -13.18495 -13.06864 -13.05312 -12.71423 -12.65586 -12.44447 -12.10273 -11.93054 -11.63935 -11.51237 -11.09853 -10.90825 -10.77357 -10.03438 -8.96840 -8.38810 -6.45297 -1.19159 -0.34089 0.23986 0.29623 1.34010 1.37446 1.48948 1.64178 2.05683 2.27376 2.30714 2.51163 2.97355 3.15960 3.58683 3.71170 3.75886 3.79459 4.33500 4.35445 4.51590 4.63915 4.73337 4.85362 4.92448 4.95180 5.02622 5.07096 5.24528 5.27913 5.43515 5.76146 6.08361 6.25205 6.54504 6.54622 6.75320 7.14574 7.31196 8.75411 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.003723 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.687228 B = 7519.453507 C = 8448.629538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.709 5.709 3 C 0.305 3.695 4 C -0.187 4.187 5 C 0.025 3.975 6 C -0.197 4.197 7 C 0.550 3.450 8 O -0.596 6.596 9 N -0.694 5.694 10 C 0.230 3.770 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.030 3.970 14 N -0.929 5.929 15 Si 0.931 3.069 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.261 1.261 19 C 0.040 3.960 20 C -0.151 4.151 21 N 0.057 4.943 22 O -0.213 6.213 23 O -0.183 6.183 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.418 0.582 28 H 0.195 0.805 29 H 0.172 0.828 30 H 0.411 0.589 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.272 0.728 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 -21.460 -0.231 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.343 5.343 3 C 0.187 3.813 4 C -0.209 4.209 5 C 0.004 3.996 6 C -0.203 4.203 7 C 0.339 3.661 8 O -0.479 6.479 9 N -0.343 5.343 10 C 0.106 3.894 11 C -0.582 4.582 12 H 0.085 0.915 13 C -0.170 4.170 14 N -0.567 5.567 15 Si 0.755 3.245 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.185 1.185 19 C 0.019 3.981 20 C -0.242 4.242 21 N 0.561 4.439 22 O -0.416 6.416 23 O -0.388 6.388 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.101 0.899 27 H 0.266 0.734 28 H 0.212 0.788 29 H 0.190 0.810 30 H 0.249 0.751 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.810 -20.807 -0.241 23.005 hybrid contribution 1.169 -0.016 -0.084 1.172 sum -8.642 -20.823 -0.325 22.547 Atomic orbital electron populations 1.22238 0.76214 1.05782 1.03654 1.46119 1.09365 1.05952 1.72826 1.17953 0.86748 0.90160 0.86461 1.21063 1.02636 0.87545 1.09667 1.21809 0.91160 1.00591 0.85993 1.19400 0.94916 0.91055 1.14954 1.18424 0.86844 0.84479 0.76348 1.90740 1.15754 1.88228 1.53150 1.45833 1.11491 1.05176 1.71833 1.19179 0.92773 0.81425 0.96000 1.21259 0.94620 0.90319 1.52052 0.91509 1.25513 1.01953 0.95868 0.93713 1.69957 1.36432 0.99939 1.50396 0.85950 0.80763 0.78436 0.79328 1.19117 1.19969 1.18536 1.20660 1.01509 0.88882 0.87035 1.20376 0.91238 0.82972 1.29659 1.43566 1.01081 1.02619 0.96674 1.94590 0.97919 1.94433 1.54682 1.94055 1.68228 1.20993 1.55524 0.90309 0.87761 0.89885 0.73409 0.78832 0.81024 0.75143 0.96692 0.96806 0.91861 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 9.96 127.77 1.27 1.52 16 2 N -0.71 -8.98 5.75 -360.81 -2.07 -11.05 16 3 C 0.31 5.32 6.63 38.47 0.26 5.57 16 4 C -0.19 -2.41 9.29 22.36 0.21 -2.20 16 5 C 0.02 0.44 9.53 22.50 0.21 0.65 16 6 C -0.20 -5.39 5.88 -20.08 -0.12 -5.51 16 7 C 0.55 20.49 7.76 86.69 0.67 21.16 16 8 O -0.60 -27.42 16.34 -4.03 -0.07 -27.48 16 9 N -0.69 -26.15 5.50 -470.01 -2.58 -28.73 16 10 C 0.23 10.87 4.50 85.63 0.38 11.26 16 11 C -0.54 -28.68 9.83 25.60 0.25 -28.43 16 12 H 0.07 3.61 7.84 -2.91 -0.02 3.59 16 13 C 0.03 1.66 5.47 84.66 0.46 2.12 16 14 N -0.93 -53.75 13.96 21.45 0.30 -53.45 16 15 Si 0.93 43.11 27.47 68.60 1.88 44.99 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 19 C 0.04 1.13 9.09 22.50 0.20 1.34 16 20 C -0.15 -3.74 6.85 36.46 0.25 -3.49 16 21 N 0.06 1.60 4.45 -46.25 -0.21 1.40 16 22 O -0.21 -6.91 18.45 18.89 0.35 -6.57 16 23 O -0.18 -4.58 15.70 18.89 0.30 -4.28 16 24 H 0.08 0.17 8.12 -2.39 -0.02 0.15 16 25 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.08 0.11 7.71 -2.39 -0.02 0.09 16 27 H 0.42 6.18 5.24 -100.61 -0.53 5.65 16 28 H 0.19 0.87 6.70 -2.91 -0.02 0.85 16 29 H 0.17 2.24 6.39 -2.91 -0.02 2.22 16 30 H 0.41 12.56 6.34 -92.71 -0.59 11.97 16 31 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 32 H 0.01 0.69 7.57 -2.38 -0.02 0.67 16 33 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.14 4.58 7.20 -2.91 -0.02 4.56 16 Total: -1.00 -72.86 299.91 1.96 -70.89 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.01 Total: 10.28 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 4.06 Total: 4.00 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -4.56 Total: -91.84 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: 0.58 Total: -38.33 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -72.86 1.96 -70.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.994 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds