Wall clock time and date at job start Tue Mar 31 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34420 * 125.74093 * 2 1 4 4 C 1.38315 * 107.35315 * 179.97438 * 3 2 1 5 5 C 1.46942 * 126.44399 * 179.97438 * 4 3 2 6 6 C 1.35181 * 119.99380 * 133.84927 * 5 4 3 7 7 C 1.41641 * 120.00604 * 348.08705 * 6 5 4 8 8 O 1.21792 * 119.99857 * 353.34075 * 7 6 5 9 9 N 1.34778 * 120.00117 * 173.33619 * 7 6 5 10 10 C 1.36815 * 119.99920 * 180.02562 * 9 7 6 11 11 H 1.07994 * 119.99984 * 321.14177 * 10 9 7 12 12 C 1.39048 * 119.99646 * 141.14019 * 10 9 7 13 13 N 1.31374 * 120.00003 * 165.16641 * 12 10 9 14 14 Si 1.86801 * 120.00190 * 345.16070 * 12 10 9 15 15 H 1.48495 * 109.47125 * 90.13994 * 14 12 10 16 16 H 1.48494 * 109.47254 * 210.14317 * 14 12 10 17 17 H 1.48506 * 109.46896 * 330.14237 * 14 12 10 18 18 C 1.46497 * 119.99818 * 0.02562 * 9 7 6 19 19 C 1.50705 * 109.47200 * 85.34015 * 18 9 7 20 20 O 1.20826 * 119.99866 * 0.02562 * 19 18 9 21 21 O 1.34229 * 120.00076 * 179.97438 * 19 18 9 22 22 C 1.41446 * 107.11384 * 0.26588 * 4 3 2 23 23 N 1.30449 * 108.03714 * 359.55182 * 22 4 3 24 24 H 1.09006 * 109.46807 * 89.99831 * 1 2 3 25 25 H 1.08994 * 109.47266 * 209.99823 * 1 2 3 26 26 H 1.09002 * 109.47161 * 330.00432 * 1 2 3 27 27 H 1.08002 * 126.32026 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.00069 * 313.84871 * 5 4 3 29 29 H 1.08001 * 119.99519 * 168.09572 * 6 5 4 30 30 H 0.96995 * 120.00339 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47169 * 205.33726 * 18 9 7 32 32 H 1.09000 * 109.47368 * 325.33818 * 18 9 7 33 33 H 0.96691 * 117.00178 * 180.02562 * 21 19 18 34 34 H 1.08002 * 125.98266 * 179.71381 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2502 1.0910 0.0000 4 6 3.5628 0.6547 0.0006 5 6 4.7640 1.5011 0.0003 6 6 5.7834 1.2279 0.8450 7 6 5.6019 0.2959 1.8961 8 8 4.4972 -0.1679 2.1147 9 7 6.6517 -0.0776 2.6543 10 6 6.4765 -0.9782 3.6692 11 1 5.5869 -0.9370 4.2801 12 6 7.4439 -1.9464 3.9142 13 7 7.4313 -2.6165 5.0441 14 14 8.7614 -2.2947 2.6365 15 1 9.9349 -1.4192 2.8843 16 1 9.1768 -3.7173 2.7289 17 1 8.2196 -2.0242 1.2805 18 6 7.9804 0.4808 2.3916 19 6 8.1233 1.7972 3.1111 20 8 7.2092 2.2249 3.7755 21 8 9.2665 2.4942 3.0146 22 6 3.5313 -0.7594 -0.0053 23 7 2.2823 -1.1356 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9176 2.1186 -0.0004 28 1 4.8323 2.3413 -0.6748 29 1 6.7362 1.7204 0.7185 30 1 8.1059 -3.2922 5.2148 31 1 8.7426 -0.2124 2.7475 32 1 8.1035 0.6371 1.3199 33 1 9.3112 3.3327 3.4940 34 1 4.3909 -1.4132 -0.0108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739027576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:12 Heat of formation + Delta-G solvation = 13.871212 kcal Electronic energy + Delta-G solvation = -21880.043136 eV Core-core repulsion = 18396.341379 eV Total energy + Delta-G solvation = -3483.701757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63648 -39.95554 -38.55714 -35.76742 -34.97755 -33.44995 -32.34972 -31.92550 -29.17663 -28.02831 -26.64493 -25.16433 -22.41124 -21.69693 -20.55072 -20.15984 -18.03997 -17.70810 -17.27975 -16.93189 -16.29100 -15.96129 -15.28324 -15.05273 -14.89283 -14.19890 -13.74961 -13.50753 -13.47778 -12.88274 -12.77641 -12.55197 -12.36316 -12.29864 -12.24677 -11.92734 -11.51537 -11.11286 -10.99643 -10.52018 -10.22078 -10.08728 -9.93153 -9.39359 -9.07712 -8.95726 -8.50865 -7.83492 -7.33748 -6.39840 -3.99731 1.57661 2.41786 2.70414 2.91332 2.94600 3.16359 3.18559 3.34415 3.56521 4.06547 4.33529 4.51350 4.78617 5.05868 5.12414 5.21566 5.32267 5.42237 5.46237 5.47560 5.63896 5.72155 5.79538 6.01200 6.12603 6.28306 6.73017 6.83166 6.89033 7.15686 7.39538 7.54260 8.21254 8.29177 8.35517 8.50946 8.95229 9.25791 9.75401 10.72238 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.006151 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.378802 B = 4550.990796 C = 5358.709367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.381 5.381 3 C 0.057 3.943 4 C -0.197 4.197 5 C -0.004 4.004 6 C -0.212 4.212 7 C 0.508 3.492 8 O -0.536 6.536 9 N -0.450 5.450 10 C -0.302 4.302 11 H 0.108 0.892 12 C 0.054 3.946 13 N -0.863 5.863 14 Si 0.870 3.130 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.257 1.257 18 C 0.092 3.908 19 C 0.455 3.545 20 O -0.491 6.491 21 O -0.527 6.527 22 C 0.127 3.873 23 N -0.312 5.312 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.169 0.831 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.275 0.725 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.400 0.600 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 9.556 -12.044 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.162 5.162 3 C -0.089 4.089 4 C -0.209 4.209 5 C -0.026 4.026 6 C -0.234 4.234 7 C 0.300 3.700 8 O -0.417 6.417 9 N -0.172 5.172 10 C -0.430 4.430 11 H 0.125 0.875 12 C -0.152 4.152 13 N -0.499 5.499 14 Si 0.698 3.302 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.181 1.181 18 C -0.034 4.034 19 C 0.294 3.706 20 O -0.376 6.376 21 O -0.339 6.339 22 C -0.061 4.061 23 N -0.132 5.132 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.186 0.814 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.258 0.742 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.169 7.874 -11.784 14.773 hybrid contribution 1.650 1.193 0.165 2.043 sum -2.520 9.067 -11.619 14.952 Atomic orbital electron populations 1.21713 0.75080 1.04154 1.02526 1.48008 1.06189 1.03980 1.58057 1.22731 0.90651 0.92827 1.02706 1.19190 0.92033 0.93411 1.16251 1.21426 0.90786 0.94976 0.95364 1.22228 0.99581 1.03263 0.98297 1.16900 0.85324 0.84360 0.83387 1.90770 1.23039 1.56822 1.71069 1.43456 1.04564 1.38190 1.30997 1.19074 1.08835 1.06719 1.08342 0.87461 1.25460 0.98020 0.95688 0.96034 1.69664 1.34873 1.23776 1.21634 0.87099 0.81335 0.78229 0.83564 1.19782 1.20865 1.18081 1.21790 0.91515 0.90079 1.00005 1.24707 0.79237 0.86820 0.79848 1.90716 1.40652 1.68646 1.37624 1.84584 1.40934 1.37659 1.70704 1.23738 0.94307 0.93904 0.94123 1.77028 1.02240 1.07567 1.26383 0.91397 0.89607 0.90047 0.81389 0.86022 0.86875 0.91423 0.87146 0.87476 0.74215 0.80752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.11 11.44 59.85 0.68 1.80 16 2 N -0.38 -6.07 3.98 -67.48 -0.27 -6.33 16 3 C 0.06 0.87 11.52 -16.39 -0.19 0.68 16 4 C -0.20 -3.48 4.45 -105.12 -0.47 -3.95 16 5 C 0.00 -0.06 10.14 -37.15 -0.38 -0.43 16 6 C -0.21 -3.84 8.93 -39.37 -0.35 -4.19 16 7 C 0.51 11.94 6.88 -14.96 -0.10 11.83 16 8 O -0.54 -14.31 12.22 5.11 0.06 -14.25 16 9 N -0.45 -11.00 1.73 -119.33 -0.21 -11.21 16 10 C -0.30 -8.65 9.40 -15.03 -0.14 -8.80 16 11 H 0.11 3.54 7.93 -52.49 -0.42 3.12 16 12 C 0.05 1.48 5.39 -17.45 -0.09 1.38 16 13 N -0.86 -25.15 13.95 55.50 0.77 -24.38 16 14 Si 0.87 19.59 24.78 -169.99 -4.21 15.38 16 15 H -0.27 -5.58 6.55 56.52 0.37 -5.21 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 18 C 0.09 1.85 4.18 -5.19 -0.02 1.83 16 19 C 0.45 8.72 8.05 36.01 0.29 9.01 16 20 O -0.49 -11.25 17.09 -18.75 -0.32 -11.57 16 21 O -0.53 -7.62 13.42 -39.25 -0.53 -8.14 16 22 C 0.13 2.50 9.12 -16.92 -0.15 2.35 16 23 N -0.31 -6.11 12.49 30.90 0.39 -5.73 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.11 1.72 6.13 -52.49 -0.32 1.39 16 30 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.11 2.30 2.97 -51.93 -0.15 2.15 16 32 H 0.11 1.71 6.46 -51.93 -0.34 1.38 16 33 H 0.40 3.91 9.10 45.56 0.41 4.32 16 34 H 0.18 3.46 7.95 -52.49 -0.42 3.04 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -37.60 299.32 -3.23 -40.83 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -2.51 Total: 9.37 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -0.92 Total: 11.51 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.69 Total: -47.65 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.78 Total: -33.96 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.21 Total: 15.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -37.60 -3.23 -40.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739027576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.705 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds