Wall clock time and date at job start Tue Mar 31 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34420 * 125.74093 * 2 1 4 4 C 1.38315 * 107.35315 * 179.97438 * 3 2 1 5 5 C 1.46942 * 126.44399 * 179.97438 * 4 3 2 6 6 C 1.35181 * 119.99380 * 133.84927 * 5 4 3 7 7 C 1.41641 * 120.00604 * 348.08705 * 6 5 4 8 8 O 1.21792 * 119.99857 * 353.34075 * 7 6 5 9 9 N 1.34778 * 120.00117 * 173.33619 * 7 6 5 10 10 C 1.36815 * 119.99920 * 180.02562 * 9 7 6 11 11 H 1.07994 * 119.99984 * 321.14177 * 10 9 7 12 12 C 1.39048 * 119.99646 * 141.14019 * 10 9 7 13 13 N 1.31374 * 120.00003 * 165.16641 * 12 10 9 14 14 Si 1.86801 * 120.00190 * 345.16070 * 12 10 9 15 15 H 1.48495 * 109.47125 * 90.13994 * 14 12 10 16 16 H 1.48494 * 109.47254 * 210.14317 * 14 12 10 17 17 H 1.48506 * 109.46896 * 330.14237 * 14 12 10 18 18 C 1.46497 * 119.99818 * 0.02562 * 9 7 6 19 19 C 1.50705 * 109.47200 * 85.34015 * 18 9 7 20 20 O 1.20826 * 119.99866 * 0.02562 * 19 18 9 21 21 O 1.34229 * 120.00076 * 179.97438 * 19 18 9 22 22 C 1.41446 * 107.11384 * 0.26588 * 4 3 2 23 23 N 1.30449 * 108.03714 * 359.55182 * 22 4 3 24 24 H 1.09006 * 109.46807 * 89.99831 * 1 2 3 25 25 H 1.08994 * 109.47266 * 209.99823 * 1 2 3 26 26 H 1.09002 * 109.47161 * 330.00432 * 1 2 3 27 27 H 1.08002 * 126.32026 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.00069 * 313.84871 * 5 4 3 29 29 H 1.08001 * 119.99519 * 168.09572 * 6 5 4 30 30 H 0.96995 * 120.00339 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47169 * 205.33726 * 18 9 7 32 32 H 1.09000 * 109.47368 * 325.33818 * 18 9 7 33 33 H 0.96691 * 117.00178 * 180.02562 * 21 19 18 34 34 H 1.08002 * 125.98266 * 179.71381 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2502 1.0910 0.0000 4 6 3.5628 0.6547 0.0006 5 6 4.7640 1.5011 0.0003 6 6 5.7834 1.2279 0.8450 7 6 5.6019 0.2959 1.8961 8 8 4.4972 -0.1679 2.1147 9 7 6.6517 -0.0776 2.6543 10 6 6.4765 -0.9782 3.6692 11 1 5.5869 -0.9370 4.2801 12 6 7.4439 -1.9464 3.9142 13 7 7.4313 -2.6165 5.0441 14 14 8.7614 -2.2947 2.6365 15 1 9.9349 -1.4192 2.8843 16 1 9.1768 -3.7173 2.7289 17 1 8.2196 -2.0242 1.2805 18 6 7.9804 0.4808 2.3916 19 6 8.1233 1.7972 3.1111 20 8 7.2092 2.2249 3.7755 21 8 9.2665 2.4942 3.0146 22 6 3.5313 -0.7594 -0.0053 23 7 2.2823 -1.1356 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9176 2.1186 -0.0004 28 1 4.8323 2.3413 -0.6748 29 1 6.7362 1.7204 0.7185 30 1 8.1059 -3.2922 5.2148 31 1 8.7426 -0.2124 2.7475 32 1 8.1035 0.6371 1.3199 33 1 9.3112 3.3327 3.4940 34 1 4.3909 -1.4132 -0.0108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739027576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:11 Heat of formation + Delta-G solvation = -16.731203 kcal Electronic energy + Delta-G solvation = -21881.370157 eV Core-core repulsion = 18396.341379 eV Total energy + Delta-G solvation = -3485.028778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97160 -41.46376 -40.18270 -37.24177 -36.65078 -34.82822 -34.20563 -33.36508 -30.50753 -29.67852 -27.98554 -26.77200 -23.97332 -23.16681 -21.80989 -21.61917 -19.58746 -19.16547 -19.09391 -18.51832 -17.72645 -17.43912 -16.76218 -16.52314 -16.21151 -15.67540 -15.39426 -15.10525 -14.87570 -14.46614 -14.15461 -13.94674 -13.87503 -13.72359 -13.37835 -13.34809 -12.88001 -12.83214 -12.52600 -12.23630 -11.89471 -11.62931 -11.56001 -11.06338 -10.68521 -10.34945 -10.14722 -9.74532 -8.68771 -8.48083 -6.16271 0.26024 1.12244 1.18108 1.21766 1.36712 1.48203 1.82728 1.94112 2.16831 2.19037 2.60882 2.82654 3.18532 3.73750 3.92877 4.05418 4.09928 4.18695 4.29700 4.41516 4.47370 4.50790 4.68089 4.69757 4.88449 4.96606 5.39382 5.45944 5.65470 5.69598 5.79470 6.06126 6.29754 6.58442 6.87415 6.95742 7.05804 7.27410 7.92335 8.69917 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.006151 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.378802 B = 4550.990796 C = 5358.709367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.381 5.381 3 C 0.076 3.924 4 C -0.237 4.237 5 C 0.042 3.958 6 C -0.248 4.248 7 C 0.505 3.495 8 O -0.586 6.586 9 N -0.468 5.468 10 C -0.320 4.320 11 H 0.032 0.968 12 C -0.002 4.002 13 N -0.921 5.921 14 Si 0.945 3.055 15 H -0.228 1.228 16 H -0.286 1.286 17 H -0.237 1.237 18 C 0.086 3.914 19 C 0.468 3.532 20 O -0.539 6.539 21 O -0.504 6.504 22 C 0.104 3.896 23 N -0.355 5.355 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.220 0.780 28 H 0.180 0.820 29 H 0.149 0.851 30 H 0.280 0.720 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.425 0.575 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 12.598 -15.435 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.161 5.161 3 C -0.072 4.072 4 C -0.249 4.249 5 C 0.021 3.979 6 C -0.269 4.269 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.190 5.190 10 C -0.448 4.448 11 H 0.050 0.950 12 C -0.203 4.203 13 N -0.559 5.559 14 Si 0.766 3.234 15 H -0.153 1.153 16 H -0.213 1.213 17 H -0.160 1.160 18 C -0.039 4.039 19 C 0.309 3.691 20 O -0.428 6.428 21 O -0.317 6.317 22 C -0.082 4.082 23 N -0.177 5.177 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.132 0.868 27 H 0.236 0.764 28 H 0.197 0.803 29 H 0.167 0.833 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.175 0.825 33 H 0.287 0.713 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.895 10.957 -15.188 18.950 hybrid contribution 0.989 0.355 1.205 1.598 sum -1.906 11.313 -13.983 18.087 Atomic orbital electron populations 1.22162 0.72100 1.05438 1.04777 1.48485 1.07948 1.03320 1.56389 1.23505 0.89635 0.94545 0.99473 1.19619 0.94250 0.92741 1.18290 1.22045 0.88293 0.94142 0.93423 1.22147 1.02498 1.04106 0.98188 1.17887 0.84318 0.83947 0.83894 1.90741 1.25019 1.58621 1.72566 1.43417 1.06781 1.38513 1.30311 1.18506 1.07244 1.09809 1.09277 0.95037 1.26400 1.01121 0.94508 0.98245 1.69826 1.36894 1.24993 1.24231 0.85941 0.78698 0.78344 0.80425 1.15305 1.21282 1.15964 1.21919 0.88631 0.90281 1.03063 1.24321 0.79504 0.86658 0.78642 1.90721 1.42617 1.69849 1.39581 1.84488 1.37976 1.38780 1.70459 1.23641 0.94064 0.95326 0.95198 1.76912 1.02844 1.10028 1.27897 0.88606 0.90373 0.86787 0.76398 0.80281 0.83324 0.91060 0.87620 0.82477 0.71296 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 11.44 127.77 1.46 3.20 16 2 N -0.38 -11.53 3.98 -367.39 -1.46 -12.99 16 3 C 0.08 2.09 11.52 84.32 0.97 3.06 16 4 C -0.24 -7.98 4.45 -20.19 -0.09 -8.07 16 5 C 0.04 1.16 10.14 23.85 0.24 1.41 16 6 C -0.25 -8.35 8.93 22.41 0.20 -8.15 16 7 C 0.50 24.12 6.88 85.08 0.59 24.71 16 8 O -0.59 -32.97 12.22 -4.64 -0.06 -33.02 16 9 N -0.47 -23.32 1.73 -649.64 -1.12 -24.44 16 10 C -0.32 -19.63 9.40 84.11 0.79 -18.84 16 11 H 0.03 2.33 7.93 -2.91 -0.02 2.31 16 12 C 0.00 -0.13 5.39 84.96 0.46 0.33 16 13 N -0.92 -57.04 13.95 21.68 0.30 -56.73 16 14 Si 0.94 40.31 24.78 68.60 1.70 42.01 16 15 H -0.23 -8.19 6.55 99.48 0.65 -7.54 16 16 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.24 -9.27 7.11 99.48 0.71 -8.56 16 18 C 0.09 3.24 4.18 85.64 0.36 3.59 16 19 C 0.47 16.86 8.05 71.24 0.57 17.43 16 20 O -0.54 -24.49 17.09 21.96 0.38 -24.12 16 21 O -0.50 -12.43 13.42 -51.41 -0.69 -13.12 16 22 C 0.10 4.23 9.12 85.69 0.78 5.01 16 23 N -0.36 -14.25 12.49 -56.17 -0.70 -14.95 16 24 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.22 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.15 3.82 6.13 -2.91 -0.02 3.80 16 30 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.11 4.09 2.97 -2.39 -0.01 4.08 16 32 H 0.16 4.27 6.46 -2.39 -0.02 4.26 16 33 H 0.43 6.52 9.10 -74.06 -0.67 5.85 16 34 H 0.15 6.59 7.95 -2.91 -0.02 6.57 16 Total: -1.00 -94.11 299.32 5.11 -89.01 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.43 Total: 24.70 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.33 Total: 23.68 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -2.98 Total: -109.12 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: -0.37 Total: -70.27 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.70 Total: 42.01 kcal Total: -94.11 5.11 -89.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739027576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.277 kcal (2) G-P(sol) polarization free energy of solvation -94.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds