Wall clock time and date at job start Tue Mar 31 2020 00:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46874 * 2 1 4 4 C 1.52996 * 109.47055 * 119.99839 * 2 1 3 5 5 N 1.46909 * 109.46998 * 60.05713 * 4 2 1 6 6 C 1.46898 * 110.99910 * 77.07689 * 5 4 2 7 7 C 1.50698 * 109.47409 * 280.26533 * 6 5 4 8 8 H 1.08002 * 119.99790 * 2.46336 * 7 6 5 9 9 C 1.37875 * 120.00565 * 182.18336 * 7 6 5 10 10 N 1.31521 * 119.99410 * 0.27454 * 9 7 6 11 11 Si 1.86800 * 120.00417 * 180.27548 * 9 7 6 12 12 H 1.48499 * 109.47055 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46889 * 120.00312 * 11 9 7 14 14 H 1.48493 * 109.46994 * 240.00136 * 11 9 7 15 15 C 1.46895 * 110.99709 * 201.03192 * 5 4 2 16 16 C 1.52996 * 109.47555 * 71.45571 * 15 5 4 17 17 H 1.08999 * 115.54615 * 29.27852 * 16 15 5 18 18 C 1.52994 * 117.50242 * 174.95416 * 16 15 5 19 19 C 1.52999 * 60.00308 * 107.49054 * 18 16 15 20 20 Cl 1.80305 * 117.49847 * 252.51601 * 19 18 16 21 21 Cl 1.80299 * 117.50254 * 107.49072 * 19 18 16 22 22 H 1.08996 * 109.47365 * 65.41450 * 1 2 3 23 23 H 1.09000 * 109.47147 * 185.40846 * 1 2 3 24 24 H 1.09004 * 109.47252 * 305.41000 * 1 2 3 25 25 H 1.09001 * 109.46927 * 240.00492 * 2 1 3 26 26 H 1.09001 * 109.46917 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47455 * 300.00263 * 3 2 1 28 28 H 1.09007 * 109.47018 * 60.00082 * 3 2 1 29 29 H 1.08989 * 109.47652 * 300.05802 * 4 2 1 30 30 H 1.08998 * 109.47039 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47101 * 160.26376 * 6 5 4 32 32 H 1.08998 * 109.47140 * 40.26683 * 6 5 4 33 33 H 0.97006 * 119.99649 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46829 * 191.45327 * 15 5 4 35 35 H 1.09001 * 109.47644 * 311.44884 * 15 5 4 36 36 H 1.09003 * 117.50210 * 214.97986 * 18 16 15 37 37 H 1.09006 * 117.50018 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5514 -2.1067 1.2485 6 6 2.3238 -2.9368 0.3147 7 6 1.8319 -2.7029 -1.0904 8 1 1.0533 -1.9779 -1.2763 9 6 2.3799 -3.4102 -2.1395 10 7 3.3281 -4.2930 -1.9131 11 14 1.7755 -3.1147 -3.8821 12 1 0.7117 -2.0786 -3.8680 13 1 2.9060 -2.6513 -4.7262 14 1 1.2288 -4.3787 -4.4374 15 6 1.5773 -2.6746 2.6030 16 6 0.4788 -2.0273 3.4486 17 1 -0.4006 -1.6910 2.8993 18 6 0.2636 -2.5700 4.8628 19 6 0.9145 -1.2004 4.6600 20 17 2.6834 -1.0634 4.9816 21 17 -0.0658 0.2563 5.0698 22 1 -0.3634 0.4275 -0.9344 23 1 -0.3633 -1.0231 0.0969 24 1 -0.3634 0.5955 0.8376 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6759 -0.2081 2.1392 30 1 3.1300 -0.7208 1.2495 31 1 2.1978 -3.9881 0.5735 32 1 3.3789 -2.6707 0.3793 33 1 3.7134 -4.7909 -2.6511 34 1 1.4082 -3.7501 2.5493 35 1 2.5482 -2.4819 3.0594 36 1 -0.7574 -2.5906 5.2441 37 1 0.9044 -3.3886 5.1907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740423540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:22 Heat of formation + Delta-G solvation = 5.453550 kcal Electronic energy + Delta-G solvation = -18487.990007 eV Core-core repulsion = 15545.739891 eV Total energy + Delta-G solvation = -2942.250116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.58772 -36.93114 -35.99563 -35.35283 -33.48746 -32.36705 -27.80583 -26.43832 -26.36962 -23.94139 -22.29553 -21.11368 -20.26734 -19.02912 -16.72853 -16.17031 -15.36299 -14.71324 -14.59643 -14.05981 -13.76448 -13.30484 -12.96066 -12.74030 -12.47353 -12.21616 -11.90375 -11.69876 -11.65603 -11.39514 -11.22524 -11.09978 -11.03726 -10.82515 -10.63510 -10.49989 -10.39073 -10.20754 -10.11776 -9.87374 -9.65536 -9.33093 -9.03430 -8.37528 -7.26032 -6.00577 -3.99477 1.19879 2.22771 3.26308 3.31514 3.39754 3.43888 4.19020 4.28831 4.47648 5.02142 5.18319 5.34456 5.38413 5.56239 5.66596 5.71154 5.81079 6.00170 6.02409 6.13790 6.28106 6.30834 6.40770 6.46686 6.56808 6.71742 6.84271 7.17989 7.21698 7.32485 7.40397 7.88287 8.12125 8.21752 8.54922 9.08062 9.63164 11.10041 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.005362 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.962398 B = 5221.052652 C = 5714.309666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.078 3.922 5 N -0.530 5.530 6 C 0.193 3.807 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.071 3.929 16 C -0.092 4.092 17 H 0.136 0.864 18 C -0.146 4.146 19 C -0.005 4.005 20 Cl -0.096 7.096 21 Cl -0.106 7.106 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.027 0.973 32 H -0.007 1.007 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.117 0.883 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 6.156 12.775 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.050 4.050 5 N -0.254 5.254 6 C 0.068 3.932 7 C -0.539 4.539 8 H 0.095 0.905 9 C -0.148 4.148 10 N -0.540 5.540 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.057 4.057 16 C -0.111 4.111 17 H 0.153 0.847 18 C -0.184 4.184 19 C -0.056 4.056 20 Cl -0.069 7.069 21 Cl -0.079 7.079 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.126 0.874 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.011 0.989 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.486 6.162 12.578 15.042 hybrid contribution 0.744 0.282 -0.528 0.955 sum -4.742 6.444 12.050 14.464 Atomic orbital electron populations 1.21652 0.95728 1.02466 0.98864 1.21404 0.96001 0.93962 1.01000 1.21837 1.00414 0.97480 1.00457 1.21941 0.96336 0.89644 0.97086 1.62073 1.56681 1.02172 1.04479 1.19813 0.90691 0.91945 0.90773 1.21421 1.20162 1.21742 0.90565 0.90454 1.25005 0.95270 0.95359 0.99151 1.69974 1.26872 1.25524 1.31657 0.86541 0.78674 0.78080 0.84786 1.19525 1.21254 1.21162 1.21836 0.94579 0.98776 0.90550 1.23475 1.02154 0.96310 0.89192 0.84666 1.23993 1.02547 0.92418 0.99482 1.27019 0.81572 0.86899 1.10138 1.98732 1.14376 1.97971 1.95807 1.98732 1.70591 1.43991 1.94579 0.94618 0.90720 0.94816 0.87401 0.93466 0.93366 0.93869 0.93156 0.95922 0.95514 0.98940 0.93129 0.89814 0.93929 0.86442 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.49 37.16 0.32 -1.93 16 2 C -0.11 -1.95 2.42 -90.62 -0.22 -2.17 16 3 C -0.14 -2.28 9.19 37.16 0.34 -1.94 16 4 C 0.08 1.46 4.28 -3.82 -0.02 1.44 16 5 N -0.53 -10.43 3.51 -236.08 -0.83 -11.26 16 6 C 0.19 4.71 4.80 -4.98 -0.02 4.69 16 7 C -0.50 -13.15 7.44 -34.44 -0.26 -13.41 16 8 H 0.08 1.98 4.96 -52.49 -0.26 1.72 16 9 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 10 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 11 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.07 1.16 5.14 -3.83 -0.02 1.14 16 16 C -0.09 -1.21 4.79 -90.62 -0.43 -1.65 16 17 H 0.14 1.86 8.14 -51.93 -0.42 1.44 16 18 C -0.15 -1.51 9.93 -26.73 -0.27 -1.77 16 19 C 0.00 -0.06 3.41 -26.73 -0.09 -0.15 16 20 Cl -0.10 -1.29 27.27 -51.86 -1.41 -2.70 16 21 Cl -0.11 -1.30 29.29 -51.86 -1.52 -2.82 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.41 7.01 -51.93 -0.36 1.05 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.11 2.37 5.15 -51.93 -0.27 2.10 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.05 0.87 6.91 -51.93 -0.36 0.51 16 30 H 0.02 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.03 0.70 7.58 -51.93 -0.39 0.31 16 32 H -0.01 -0.19 7.63 -51.93 -0.40 -0.59 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.08 1.37 7.66 -51.93 -0.40 0.97 16 35 H 0.04 0.71 5.98 -51.93 -0.31 0.40 16 36 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -27.47 323.54 -9.60 -37.07 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.66 Total: -1.55 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.77 Total: -14.39 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.09 Total: -36.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -2.93 Total: -5.53 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.47 -9.60 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740423540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.520 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds