Wall clock time and date at job start Tue Mar 31 2020 00:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46874 * 2 1 4 4 C 1.52996 * 109.47055 * 119.99839 * 2 1 3 5 5 N 1.46909 * 109.46998 * 60.05713 * 4 2 1 6 6 C 1.46898 * 110.99910 * 77.07689 * 5 4 2 7 7 C 1.50698 * 109.47409 * 280.26533 * 6 5 4 8 8 H 1.08002 * 119.99790 * 2.46336 * 7 6 5 9 9 C 1.37875 * 120.00565 * 182.18336 * 7 6 5 10 10 N 1.31521 * 119.99410 * 0.27454 * 9 7 6 11 11 Si 1.86800 * 120.00417 * 180.27548 * 9 7 6 12 12 H 1.48499 * 109.47055 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46889 * 120.00312 * 11 9 7 14 14 H 1.48493 * 109.46994 * 240.00136 * 11 9 7 15 15 C 1.46895 * 110.99709 * 201.03192 * 5 4 2 16 16 C 1.52996 * 109.47555 * 71.45571 * 15 5 4 17 17 H 1.08999 * 115.54615 * 29.27852 * 16 15 5 18 18 C 1.52994 * 117.50242 * 174.95416 * 16 15 5 19 19 C 1.52999 * 60.00308 * 107.49054 * 18 16 15 20 20 Cl 1.80305 * 117.49847 * 252.51601 * 19 18 16 21 21 Cl 1.80299 * 117.50254 * 107.49072 * 19 18 16 22 22 H 1.08996 * 109.47365 * 65.41450 * 1 2 3 23 23 H 1.09000 * 109.47147 * 185.40846 * 1 2 3 24 24 H 1.09004 * 109.47252 * 305.41000 * 1 2 3 25 25 H 1.09001 * 109.46927 * 240.00492 * 2 1 3 26 26 H 1.09001 * 109.46917 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47455 * 300.00263 * 3 2 1 28 28 H 1.09007 * 109.47018 * 60.00082 * 3 2 1 29 29 H 1.08989 * 109.47652 * 300.05802 * 4 2 1 30 30 H 1.08998 * 109.47039 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47101 * 160.26376 * 6 5 4 32 32 H 1.08998 * 109.47140 * 40.26683 * 6 5 4 33 33 H 0.97006 * 119.99649 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46829 * 191.45327 * 15 5 4 35 35 H 1.09001 * 109.47644 * 311.44884 * 15 5 4 36 36 H 1.09003 * 117.50210 * 214.97986 * 18 16 15 37 37 H 1.09006 * 117.50018 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5514 -2.1067 1.2485 6 6 2.3238 -2.9368 0.3147 7 6 1.8319 -2.7029 -1.0904 8 1 1.0533 -1.9779 -1.2763 9 6 2.3799 -3.4102 -2.1395 10 7 3.3281 -4.2930 -1.9131 11 14 1.7755 -3.1147 -3.8821 12 1 0.7117 -2.0786 -3.8680 13 1 2.9060 -2.6513 -4.7262 14 1 1.2288 -4.3787 -4.4374 15 6 1.5773 -2.6746 2.6030 16 6 0.4788 -2.0273 3.4486 17 1 -0.4006 -1.6910 2.8993 18 6 0.2636 -2.5700 4.8628 19 6 0.9145 -1.2004 4.6600 20 17 2.6834 -1.0634 4.9816 21 17 -0.0658 0.2563 5.0698 22 1 -0.3634 0.4275 -0.9344 23 1 -0.3633 -1.0231 0.0969 24 1 -0.3634 0.5955 0.8376 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6759 -0.2081 2.1392 30 1 3.1300 -0.7208 1.2495 31 1 2.1978 -3.9881 0.5735 32 1 3.3789 -2.6707 0.3793 33 1 3.7134 -4.7909 -2.6511 34 1 1.4082 -3.7501 2.5493 35 1 2.5482 -2.4819 3.0594 36 1 -0.7574 -2.5906 5.2441 37 1 0.9044 -3.3886 5.1907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740423540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:21 Heat of formation + Delta-G solvation = -8.210753 kcal Electronic energy + Delta-G solvation = -18488.582536 eV Core-core repulsion = 15545.739891 eV Total energy + Delta-G solvation = -2942.842645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84869 -38.25382 -36.99276 -36.42507 -35.12093 -34.25073 -29.63283 -27.85516 -27.78831 -25.68731 -23.22456 -22.80990 -21.45970 -20.57392 -18.45417 -17.55881 -16.79299 -16.38266 -15.97171 -15.66057 -15.25581 -14.63704 -14.31656 -14.13233 -13.90998 -13.64732 -13.26936 -13.13265 -12.93561 -12.86904 -12.59411 -12.53364 -12.45901 -12.30482 -12.13707 -11.89795 -11.82348 -11.60956 -11.52380 -11.31137 -11.11782 -10.86434 -10.63535 -10.47125 -8.94315 -8.10861 -6.15922 0.21601 1.23376 1.42736 1.44810 1.56698 2.28705 2.45366 3.06994 3.21582 3.27667 3.69704 4.05475 4.20428 4.30745 4.39722 4.54505 4.64315 4.66329 4.74866 4.78172 4.86161 4.96227 5.08341 5.13888 5.16611 5.23133 5.26564 5.34261 5.47582 5.69965 5.81211 5.90027 6.18789 6.46256 6.69609 6.99658 7.50996 8.99971 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.005362 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.962398 B = 5221.052652 C = 5714.309666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.086 3.914 5 N -0.528 5.528 6 C 0.209 3.791 7 C -0.500 4.500 8 H 0.084 0.916 9 C -0.002 4.002 10 N -0.940 5.940 11 Si 0.955 3.045 12 H -0.259 1.259 13 H -0.286 1.286 14 H -0.283 1.283 15 C 0.071 3.929 16 C -0.103 4.103 17 H 0.135 0.865 18 C -0.116 4.116 19 C -0.010 4.010 20 Cl -0.109 7.109 21 Cl -0.101 7.101 22 H 0.042 0.958 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.000 1.000 31 H 0.003 0.997 32 H -0.042 1.042 33 H 0.259 0.741 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.145 0.855 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 7.357 13.535 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.127 4.127 3 C -0.196 4.196 4 C -0.042 4.042 5 N -0.251 5.251 6 C 0.082 3.918 7 C -0.539 4.539 8 H 0.102 0.898 9 C -0.199 4.199 10 N -0.582 5.582 11 Si 0.781 3.219 12 H -0.183 1.183 13 H -0.212 1.212 14 H -0.209 1.209 15 C -0.057 4.057 16 C -0.122 4.122 17 H 0.152 0.848 18 C -0.154 4.154 19 C -0.061 4.061 20 Cl -0.082 7.082 21 Cl -0.074 7.074 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.018 0.982 31 H 0.021 0.979 32 H -0.024 1.024 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.162 0.838 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.279 7.381 13.356 16.907 hybrid contribution 1.298 -0.070 -0.689 1.471 sum -5.981 7.310 12.667 15.801 Atomic orbital electron populations 1.21547 0.94445 1.01712 1.00140 1.21349 0.97066 0.95287 0.98954 1.21769 1.00194 0.95696 1.01916 1.21898 0.94966 0.89132 0.98170 1.62023 1.55164 1.02199 1.05752 1.19457 0.89256 0.91324 0.91724 1.21764 1.19655 1.21075 0.91390 0.89814 1.25833 0.95530 0.95298 1.03234 1.70105 1.28446 1.26866 1.32769 0.85533 0.78295 0.78146 0.79934 1.18306 1.21206 1.20907 1.21848 0.95927 0.98836 0.89130 1.23203 1.00986 0.97996 0.90037 0.84751 1.24171 1.03983 0.91200 0.96059 1.27104 0.81151 0.88052 1.09789 1.98736 1.15610 1.98034 1.95793 1.98736 1.70262 1.43960 1.94465 0.93901 0.92623 0.92751 0.91174 0.93859 0.92160 0.92111 0.91219 0.98154 0.97855 1.02401 0.93197 0.90313 0.94254 0.83750 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.49 71.98 0.61 -3.36 16 2 C -0.11 -3.91 2.42 -10.80 -0.03 -3.94 16 3 C -0.14 -4.13 9.19 71.98 0.66 -3.46 16 4 C 0.09 3.21 4.28 86.30 0.37 3.58 16 5 N -0.53 -21.04 3.51 -900.82 -3.16 -24.20 16 6 C 0.21 10.62 4.80 85.56 0.41 11.03 16 7 C -0.50 -26.88 7.44 25.60 0.19 -26.69 16 8 H 0.08 4.32 4.96 -2.91 -0.01 4.31 16 9 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 10 N -0.94 -56.07 13.29 21.45 0.28 -55.79 16 11 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 15 C 0.07 2.30 5.14 86.30 0.44 2.75 16 16 C -0.10 -2.52 4.79 -10.80 -0.05 -2.58 16 17 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 18 C -0.12 -2.05 9.93 30.59 0.30 -1.75 16 19 C -0.01 -0.22 3.41 30.59 0.10 -0.12 16 20 Cl -0.11 -2.78 27.27 -2.72 -0.07 -2.86 16 21 Cl -0.10 -2.23 29.29 -2.72 -0.08 -2.31 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 2.03 7.01 -2.39 -0.02 2.01 16 24 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.07 3.10 5.15 -2.39 -0.01 3.09 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 2.32 6.91 -2.39 -0.02 2.30 16 30 H 0.00 0.01 7.66 -2.39 -0.02 -0.01 16 31 H 0.00 0.18 7.58 -2.39 -0.02 0.17 16 32 H -0.04 -2.37 7.63 -2.39 -0.02 -2.39 16 33 H 0.26 14.69 8.31 -92.70 -0.77 13.91 16 34 H 0.08 2.60 7.66 -2.38 -0.02 2.59 16 35 H 0.04 1.31 5.98 -2.39 -0.01 1.30 16 36 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -60.18 323.54 3.52 -56.66 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.05 Total: 6.84 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 3.48 Total: -24.18 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.88 Total: -79.98 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -0.15 Total: -5.17 kcal Total: -60.18 3.52 -56.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740423540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.451 kcal (2) G-P(sol) polarization free energy of solvation -60.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds