Wall clock time and date at job start Tue Mar 31 2020 00:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31889 * 118.94837 * 2 1 4 4 C 1.32127 * 120.97441 * 180.02562 * 3 2 1 5 5 C 1.40016 * 118.91501 * 359.97438 * 4 3 2 6 6 C 1.47710 * 120.94302 * 179.73017 * 5 4 3 7 7 O 1.21473 * 120.00091 * 173.93951 * 6 5 4 8 8 O 1.34708 * 120.00198 * 353.93554 * 6 5 4 9 9 C 1.45199 * 117.00304 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46925 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00506 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99628 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99853 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00102 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99830 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99899 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00144 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46591 * 90.00254 * 17 15 13 19 19 H 1.48496 * 109.46997 * 210.00291 * 17 15 13 20 20 H 1.48495 * 109.47133 * 330.00616 * 17 15 13 21 21 C 1.39989 * 118.11394 * 0.02562 * 5 4 3 22 22 C 1.50691 * 120.53879 * 179.97438 * 21 5 4 23 23 N 1.31866 * 118.94739 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47001 * 90.00361 * 1 2 3 25 25 H 1.09002 * 109.47663 * 209.99983 * 1 2 3 26 26 H 1.08997 * 109.47276 * 329.99967 * 1 2 3 27 27 H 1.08000 * 120.53681 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46903 * 299.99655 * 9 8 6 29 29 H 1.08995 * 109.46883 * 60.00189 * 9 8 6 30 30 H 0.97001 * 119.99963 * 0.02562 * 12 10 9 31 31 H 0.97000 * 120.00081 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.47121 * 83.68499 * 22 21 5 33 33 H 1.09007 * 109.47166 * 203.68267 * 22 21 5 34 34 H 1.09001 * 109.47465 * 323.67653 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4657 1.2008 -0.0005 5 6 4.1856 -0.0001 -0.0005 6 6 5.6627 -0.0002 -0.0070 7 8 6.2706 -1.0460 0.1041 8 8 6.3358 1.1595 -0.1363 9 6 7.7858 1.0839 -0.1351 10 6 8.3611 2.4684 -0.2877 11 8 7.6219 3.4247 -0.3881 12 7 9.6972 2.6439 -0.3126 13 6 10.2207 3.9034 -0.4519 14 1 9.5624 4.7548 -0.5422 15 6 11.5981 4.0842 -0.4781 16 7 12.0999 5.2915 -0.6112 17 14 12.7367 2.6115 -0.3227 18 1 13.0319 2.0695 -1.6733 19 1 14.0028 3.0314 0.3298 20 1 12.0804 1.5630 0.4989 21 6 3.4658 -1.2007 -0.0005 22 6 4.1852 -2.5248 -0.0011 23 7 2.1452 -1.1539 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.9813 2.1498 -0.0009 28 1 8.1262 0.6511 0.8056 29 1 8.1177 0.4587 -0.9639 30 1 10.2884 1.8790 -0.2326 31 1 13.0614 5.4178 -0.6291 32 1 4.4584 -2.7903 1.0202 33 1 3.5315 -3.2933 -0.4138 34 1 5.0860 -2.4487 -0.6101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777196128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:14 Heat of formation + Delta-G solvation = -66.631664 kcal Electronic energy + Delta-G solvation = -20648.798359 eV Core-core repulsion = 17161.605736 eV Total energy + Delta-G solvation = -3487.192624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64539 -40.18365 -38.38449 -36.49645 -34.68637 -34.11193 -33.85512 -31.84293 -29.72157 -29.39898 -28.16396 -24.72401 -24.15620 -22.91701 -21.38968 -19.71008 -18.69230 -18.48871 -17.65018 -16.69483 -16.51674 -16.20308 -15.64414 -15.62513 -14.98809 -14.29972 -14.00165 -13.79266 -13.55537 -13.38457 -13.05122 -12.76157 -12.69468 -12.65641 -12.46110 -12.42373 -12.23451 -11.81175 -11.29959 -10.86281 -10.68646 -10.64108 -10.34983 -10.08227 -9.79478 -9.71384 -9.59551 -8.72524 -8.33239 -6.42522 -3.95741 0.04703 0.74032 2.29514 2.38119 2.95794 3.00588 3.09714 3.38635 3.49989 3.50558 3.70105 4.00600 4.08810 4.25332 4.51436 4.72813 4.88896 5.07199 5.13961 5.17299 5.26267 5.31305 5.38467 5.46901 5.47545 5.60351 5.61604 5.82971 6.05031 6.32327 6.62527 7.39817 7.58672 7.70934 7.96800 8.43523 8.79992 9.25943 9.60632 10.69643 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.003363 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.582968 B = 8324.991349 C = 9049.891931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.346 3.654 3 N -0.530 5.530 4 C 0.221 3.779 5 C -0.243 4.243 6 C 0.519 3.481 7 O -0.501 6.501 8 O -0.319 6.319 9 C 0.060 3.940 10 C 0.446 3.554 11 O -0.557 6.557 12 N -0.578 5.578 13 C -0.309 4.309 14 H 0.123 0.877 15 C 0.046 3.954 16 N -0.874 5.874 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 C 0.244 3.756 22 C -0.115 4.115 23 N -0.529 5.529 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.191 0.809 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.373 0.627 31 H 0.276 0.724 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.255 -15.350 1.564 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.081 3.919 3 N -0.245 5.245 4 C 0.054 3.946 5 C -0.249 4.249 6 C 0.362 3.638 7 O -0.391 6.391 8 O -0.233 6.233 9 C -0.017 4.017 10 C 0.231 3.769 11 O -0.439 6.439 12 N -0.218 5.218 13 C -0.437 4.437 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.513 5.513 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.193 1.193 21 C 0.098 3.902 22 C -0.171 4.171 23 N -0.245 5.245 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.208 0.792 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.206 0.794 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.363 -14.826 1.509 22.882 hybrid contribution 2.230 -1.037 0.143 2.464 sum -15.133 -15.864 1.652 21.986 Atomic orbital electron populations 1.20671 0.85131 1.04605 1.04332 1.23655 0.98641 0.83439 0.86185 1.68447 1.09734 1.29758 1.16531 1.23936 0.89077 0.98632 0.82916 1.20730 0.92279 0.97041 1.14849 1.20569 0.87744 0.82188 0.73300 1.90788 1.69911 1.32386 1.46047 1.86571 1.21614 1.32716 1.82425 1.22813 0.76242 0.98885 1.03802 1.19149 0.83187 0.88801 0.85751 1.90609 1.58332 1.41440 1.53506 1.42027 1.04667 1.09357 1.65719 1.19427 0.91992 0.84341 1.47963 0.85967 1.25044 0.96689 0.96928 0.97202 1.69611 1.13359 1.20468 1.47836 0.86676 0.81484 0.82246 0.79080 1.19386 1.19931 1.19332 1.21991 0.88955 0.95306 0.83924 1.21140 1.00562 0.90548 1.04883 1.68315 1.08618 1.30120 1.17409 0.89012 0.89275 0.89082 0.79186 0.89125 0.89121 0.79360 0.91338 0.88833 0.90205 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.31 36.00 0.37 -0.25 16 2 C 0.35 3.86 7.64 -157.06 -1.20 2.66 16 3 N -0.53 -6.61 10.31 -10.38 -0.11 -6.72 16 4 C 0.22 2.81 10.90 -16.76 -0.18 2.63 16 5 C -0.24 -3.18 5.91 -104.71 -0.62 -3.80 16 6 C 0.52 7.56 7.85 34.60 0.27 7.83 16 7 O -0.50 -7.45 13.32 -19.25 -0.26 -7.71 16 8 O -0.32 -5.34 9.13 -47.19 -0.43 -5.77 16 9 C 0.06 1.01 5.95 36.01 0.21 1.22 16 10 C 0.45 9.92 7.86 -10.98 -0.09 9.84 16 11 O -0.56 -14.76 16.08 -14.11 -0.23 -14.98 16 12 N -0.58 -13.30 5.09 -10.96 -0.06 -13.35 16 13 C -0.31 -8.47 10.16 -14.93 -0.15 -8.63 16 14 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 15 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 16 N -0.87 -24.79 13.96 55.50 0.77 -24.02 16 17 Si 0.88 18.66 27.74 -169.99 -4.71 13.94 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 21 C 0.24 2.94 6.87 -81.81 -0.56 2.38 16 22 C -0.11 -1.13 9.00 36.00 0.32 -0.81 16 23 N -0.53 -6.25 10.25 -6.66 -0.07 -6.32 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.19 2.31 7.73 -52.49 -0.41 1.91 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 31 H 0.28 7.20 8.31 -40.82 -0.34 6.87 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.14 5.95 -51.93 -0.31 0.83 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -32.82 306.68 -5.64 -38.47 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.46 Total: 7.65 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -1.72 Total: 14.20 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.54 Total: -50.41 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.91 Total: -28.47 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.82 -5.64 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777196128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.164 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds