Wall clock time and date at job start Tue Mar 31 2020 00:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31889 * 118.94837 * 2 1 4 4 C 1.32127 * 120.97441 * 180.02562 * 3 2 1 5 5 C 1.40016 * 118.91501 * 359.97438 * 4 3 2 6 6 C 1.47710 * 120.94302 * 179.73017 * 5 4 3 7 7 O 1.21473 * 120.00091 * 173.93951 * 6 5 4 8 8 O 1.34708 * 120.00198 * 353.93554 * 6 5 4 9 9 C 1.45199 * 117.00304 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46925 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00506 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99628 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99853 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00102 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99830 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99899 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00144 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46591 * 90.00254 * 17 15 13 19 19 H 1.48496 * 109.46997 * 210.00291 * 17 15 13 20 20 H 1.48495 * 109.47133 * 330.00616 * 17 15 13 21 21 C 1.39989 * 118.11394 * 0.02562 * 5 4 3 22 22 C 1.50691 * 120.53879 * 179.97438 * 21 5 4 23 23 N 1.31866 * 118.94739 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47001 * 90.00361 * 1 2 3 25 25 H 1.09002 * 109.47663 * 209.99983 * 1 2 3 26 26 H 1.08997 * 109.47276 * 329.99967 * 1 2 3 27 27 H 1.08000 * 120.53681 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46903 * 299.99655 * 9 8 6 29 29 H 1.08995 * 109.46883 * 60.00189 * 9 8 6 30 30 H 0.97001 * 119.99963 * 0.02562 * 12 10 9 31 31 H 0.97000 * 120.00081 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.47121 * 83.68499 * 22 21 5 33 33 H 1.09007 * 109.47166 * 203.68267 * 22 21 5 34 34 H 1.09001 * 109.47465 * 323.67653 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4657 1.2008 -0.0005 5 6 4.1856 -0.0001 -0.0005 6 6 5.6627 -0.0002 -0.0070 7 8 6.2706 -1.0460 0.1041 8 8 6.3358 1.1595 -0.1363 9 6 7.7858 1.0839 -0.1351 10 6 8.3611 2.4684 -0.2877 11 8 7.6219 3.4247 -0.3881 12 7 9.6972 2.6439 -0.3126 13 6 10.2207 3.9034 -0.4519 14 1 9.5624 4.7548 -0.5422 15 6 11.5981 4.0842 -0.4781 16 7 12.0999 5.2915 -0.6112 17 14 12.7367 2.6115 -0.3227 18 1 13.0319 2.0695 -1.6733 19 1 14.0028 3.0314 0.3298 20 1 12.0804 1.5630 0.4989 21 6 3.4658 -1.2007 -0.0005 22 6 4.1852 -2.5248 -0.0011 23 7 2.1452 -1.1539 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.9813 2.1498 -0.0009 28 1 8.1262 0.6511 0.8056 29 1 8.1177 0.4587 -0.9639 30 1 10.2884 1.8790 -0.2326 31 1 13.0614 5.4178 -0.6291 32 1 4.4584 -2.7903 1.0202 33 1 3.5315 -3.2933 -0.4138 34 1 5.0860 -2.4487 -0.6101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777196128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:14 Heat of formation + Delta-G solvation = -89.596105 kcal Electronic energy + Delta-G solvation = -20649.794172 eV Core-core repulsion = 17161.605736 eV Total energy + Delta-G solvation = -3488.188437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.60291 -41.37543 -40.14138 -37.74491 -36.09279 -35.59324 -34.74423 -33.86463 -30.80144 -30.21782 -29.40357 -26.49466 -25.16739 -23.87966 -22.45337 -21.54782 -20.54100 -19.55893 -18.80417 -17.91139 -17.75863 -17.45453 -17.01462 -16.74307 -16.58282 -15.73664 -15.53432 -14.84913 -14.73641 -14.43398 -14.27026 -14.17277 -13.90725 -13.85532 -13.49406 -13.32739 -13.20577 -12.99986 -12.78326 -12.45547 -12.00265 -11.92080 -11.73616 -11.58322 -11.39920 -10.71429 -10.61952 -10.51188 -10.34031 -8.45805 -6.09153 -0.89905 -0.19569 1.15401 1.22658 1.31185 1.34401 1.45365 1.76343 2.20803 2.46364 2.67408 2.78120 2.84378 3.08819 3.17001 3.45636 3.67175 3.88790 4.02380 4.11957 4.15111 4.36650 4.62588 4.63672 4.69048 4.78415 4.88040 4.97753 5.21087 5.33181 5.47483 5.70146 5.85597 6.39140 6.52147 6.77542 6.80418 7.25859 7.77854 8.70819 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.003363 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.582968 B = 8324.991349 C = 9049.891931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.342 3.658 3 N -0.545 5.545 4 C 0.217 3.783 5 C -0.258 4.258 6 C 0.525 3.475 7 O -0.502 6.502 8 O -0.339 6.339 9 C 0.070 3.930 10 C 0.448 3.552 11 O -0.608 6.608 12 N -0.575 5.575 13 C -0.333 4.333 14 H 0.060 0.940 15 C -0.009 4.009 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.255 1.255 19 H -0.274 1.274 20 H -0.229 1.229 21 C 0.244 3.756 22 C -0.110 4.110 23 N -0.534 5.534 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.187 0.813 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.394 0.606 31 H 0.282 0.718 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 -18.999 1.948 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 N -0.260 5.260 4 C 0.051 3.949 5 C -0.264 4.264 6 C 0.369 3.631 7 O -0.392 6.392 8 O -0.254 6.254 9 C -0.007 4.007 10 C 0.235 3.765 11 O -0.493 6.493 12 N -0.217 5.217 13 C -0.462 4.462 14 H 0.078 0.922 15 C -0.208 4.208 16 N -0.566 5.566 17 Si 0.781 3.219 18 H -0.179 1.179 19 H -0.199 1.199 20 H -0.152 1.152 21 C 0.098 3.902 22 C -0.167 4.167 23 N -0.250 5.250 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.204 0.796 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.230 0.770 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.579 -18.507 1.899 25.596 hybrid contribution 2.115 0.175 0.009 2.122 sum -15.464 -18.332 1.907 24.059 Atomic orbital electron populations 1.20853 0.82250 1.05783 1.05637 1.24474 1.00347 0.82900 0.84513 1.68520 1.09505 1.30604 1.17380 1.23950 0.89523 0.98666 0.82806 1.20683 0.91432 0.97627 1.16629 1.20658 0.88060 0.81453 0.72933 1.90783 1.70028 1.32097 1.46314 1.86562 1.21564 1.34235 1.83046 1.22683 0.76550 0.94738 1.06696 1.20189 0.82605 0.90705 0.83032 1.90589 1.59582 1.44076 1.55026 1.41796 1.05441 1.08367 1.66117 1.18999 0.92092 0.84822 1.50279 0.92152 1.26108 0.98136 1.00972 0.95628 1.69784 1.14256 1.23777 1.48798 0.85410 0.78173 0.78035 0.80257 1.17931 1.19867 1.15203 1.22363 0.89223 0.95733 0.82872 1.21164 1.00339 0.89849 1.05307 1.68447 1.08387 1.30242 1.17896 0.87387 0.87759 0.88202 0.79567 0.86037 0.85930 0.77005 0.90840 0.87977 0.88498 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 10.31 71.23 0.73 -0.29 16 2 C 0.34 7.10 7.64 138.70 1.06 8.16 16 3 N -0.54 -13.23 10.31 -186.75 -1.93 -15.16 16 4 C 0.22 5.51 10.90 85.08 0.93 6.44 16 5 C -0.26 -6.50 5.91 -19.92 -0.12 -6.62 16 6 C 0.52 14.50 7.85 70.33 0.55 15.05 16 7 O -0.50 -13.66 13.32 19.92 0.27 -13.40 16 8 O -0.34 -11.00 9.13 -49.79 -0.45 -11.46 16 9 C 0.07 2.19 5.95 71.24 0.42 2.61 16 10 C 0.45 19.87 7.86 87.66 0.69 20.56 16 11 O -0.61 -33.48 16.08 15.73 0.25 -33.23 16 12 N -0.58 -26.19 5.09 -306.97 -1.56 -27.75 16 13 C -0.33 -18.95 10.16 84.04 0.85 -18.10 16 14 H 0.06 4.10 7.39 -2.91 -0.02 4.07 16 15 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 16 N -0.93 -54.34 13.96 21.66 0.30 -54.04 16 17 Si 0.96 37.11 27.74 68.60 1.90 39.02 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.23 -7.33 6.52 99.48 0.65 -6.69 16 21 C 0.24 5.48 6.87 42.93 0.29 5.78 16 22 C -0.11 -1.92 9.00 71.23 0.64 -1.28 16 23 N -0.53 -11.63 10.25 -175.00 -1.79 -13.42 16 24 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.19 4.72 7.73 -2.91 -0.02 4.70 16 28 H 0.12 3.10 8.14 -2.39 -0.02 3.09 16 29 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.39 14.52 5.76 -92.71 -0.53 13.99 16 31 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.10 1.91 5.95 -2.39 -0.01 1.89 16 Total: -1.00 -75.43 306.68 4.08 -71.35 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.56 Total: 25.76 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: 6.53 Total: 32.33 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.98 Total: -110.37 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: 0.06 Total: -58.08 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 1.90 Total: 39.02 kcal Total: -75.43 4.08 -71.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777196128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.242 kcal (2) G-P(sol) polarization free energy of solvation -75.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds