Wall clock time and date at job start Tue Mar 31 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46963 * 108.96387 * 3 2 1 5 5 C 1.37101 * 119.99552 * 263.88193 * 4 3 2 6 6 H 1.08001 * 119.99611 * 200.35318 * 5 4 3 7 7 C 1.38946 * 120.00125 * 20.36487 * 5 4 3 8 8 N 1.31414 * 120.00131 * 21.28539 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 201.29255 * 7 5 4 10 10 H 1.48501 * 109.47246 * 59.99691 * 9 7 5 11 11 H 1.48498 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47003 * 299.99781 * 9 7 5 13 13 C 1.34774 * 119.99903 * 83.88584 * 4 3 2 14 14 O 1.21287 * 120.00263 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99392 * 179.97438 * 13 4 3 16 16 N 1.46509 * 109.46404 * 180.02562 * 15 13 4 17 17 C 1.47311 * 126.69013 * 269.97996 * 16 15 13 18 18 C 1.51582 * 103.59151 * 179.84449 * 17 16 15 19 19 O 1.21238 * 127.15461 * 180.23977 * 18 17 16 20 20 N 1.34762 * 105.68684 * 0.32287 * 18 17 16 21 21 C 1.46496 * 124.18029 * 179.97438 * 20 18 17 22 22 C 1.33801 * 111.64501 * 359.65729 * 20 18 17 23 23 O 1.21534 * 123.77269 * 180.22917 * 22 20 18 24 24 H 4.40646 * 5.51483 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47260 * 348.96175 * 3 2 1 26 26 H 1.08999 * 109.46786 * 228.96460 * 3 2 1 27 27 H 0.97004 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47224 * 60.00292 * 15 13 4 29 29 H 1.08994 * 109.47472 * 299.99853 * 15 13 4 30 30 H 1.09006 * 110.59824 * 298.57095 * 17 16 15 31 31 H 1.09000 * 110.59524 * 61.50998 * 17 16 15 32 32 H 1.08991 * 109.47808 * 269.70198 * 21 20 18 33 33 H 1.08999 * 109.47144 * 149.69954 * 21 20 18 34 34 H 1.09006 * 109.46877 * 29.70766 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4498 -1.3063 5 6 3.4823 -0.4703 -2.2612 6 1 4.1332 -0.1847 -3.0743 7 6 2.9976 -1.7702 -2.1830 8 7 1.9150 -2.0268 -1.4837 9 14 3.8850 -3.1529 -3.0718 10 1 5.2756 -3.2572 -2.5614 11 1 3.1726 -4.4334 -2.8312 12 1 3.9126 -2.8674 -4.5288 13 6 3.2409 1.7673 -1.5692 14 8 2.9334 2.5812 -0.7242 15 6 3.7436 2.2291 -2.9128 16 7 3.7674 3.6936 -2.9480 17 6 2.6747 4.5815 -3.3810 18 6 3.2533 5.9712 -3.2035 19 8 2.7048 7.0277 -3.4336 20 7 4.5049 5.7881 -2.7386 21 6 5.4339 6.8766 -2.4252 22 6 4.7919 4.4895 -2.5921 23 8 5.8589 4.0754 -2.1833 24 1 -1.0501 0.0001 0.0002 25 1 3.0098 -1.0078 0.1968 26 1 3.0090 0.6755 0.7752 27 1 1.5764 -2.9342 -1.4294 28 1 3.0825 1.8572 -3.6955 29 1 4.7508 1.8457 -3.0753 30 1 2.4227 4.3982 -4.4256 31 1 1.7990 4.4498 -2.7455 32 1 6.0225 7.1182 -3.3101 33 1 6.0994 6.5658 -1.6199 34 1 4.8709 7.7560 -2.1121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861520772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:14 Heat of formation + Delta-G solvation = 7.213465 kcal Electronic energy + Delta-G solvation = -21814.506648 eV Core-core repulsion = 18330.516189 eV Total energy + Delta-G solvation = -3483.990459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07807 -38.87446 -38.28203 -35.93446 -35.37191 -34.66245 -32.04060 -31.53967 -29.95870 -27.16690 -27.00251 -25.73183 -24.43026 -22.30275 -20.35026 -19.32552 -18.03593 -17.35844 -17.16359 -16.61310 -16.34881 -16.07162 -15.38616 -14.84902 -14.52431 -14.23382 -14.08141 -14.02724 -13.78317 -13.66952 -12.78727 -12.77787 -12.59112 -12.54004 -12.02018 -11.68239 -11.33361 -11.12959 -10.76533 -10.68552 -10.57448 -10.07922 -9.71544 -9.48137 -9.40039 -9.22189 -8.80599 -8.24445 -8.02159 -6.49936 -4.10990 1.74808 2.24290 3.02923 3.08803 3.14758 3.16495 3.23950 3.60796 3.86838 4.04730 4.19424 4.22004 4.81744 4.84092 4.91649 5.16269 5.27635 5.32272 5.48458 5.55146 5.62073 5.63596 5.89061 5.98931 6.13625 6.54853 6.64441 6.75202 7.10315 7.23610 7.31046 7.44515 7.54177 8.14778 8.30890 8.89581 8.93148 9.27450 9.69224 10.48424 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.005113 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.661243 B = 5475.203910 C = 6042.568355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.100 4.100 3 C 0.243 3.757 4 N -0.432 5.432 5 C -0.357 4.357 6 H 0.101 0.899 7 C 0.044 3.956 8 N -0.843 5.843 9 Si 0.918 3.082 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.441 3.559 14 O -0.596 6.596 15 C 0.151 3.849 16 N -0.600 5.600 17 C 0.065 3.935 18 C 0.527 3.473 19 O -0.484 6.484 20 N -0.580 5.580 21 C 0.091 3.909 22 C 0.703 3.297 23 O -0.543 6.543 24 H 0.197 0.803 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.273 0.727 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 7.468 -4.426 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.102 4.102 3 C 0.121 3.879 4 N -0.150 5.150 5 C -0.484 4.484 6 H 0.118 0.882 7 C -0.164 4.164 8 N -0.478 5.478 9 Si 0.744 3.256 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.228 3.772 14 O -0.481 6.481 15 C 0.027 3.973 16 N -0.337 5.337 17 C -0.061 4.061 18 C 0.315 3.685 19 O -0.355 6.355 20 N -0.327 5.327 21 C -0.051 4.051 22 C 0.405 3.595 23 O -0.417 6.417 24 H 0.215 0.785 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.419 7.918 -3.837 9.125 hybrid contribution -0.013 -1.021 -0.475 1.126 sum 2.406 6.897 -4.312 8.482 Atomic orbital electron populations 1.24176 0.95294 1.06186 1.03185 1.23061 0.94260 0.95484 0.97392 1.18000 0.84315 1.00201 0.85406 1.43629 1.55410 1.03868 1.12083 1.19526 1.29721 0.91035 1.08128 0.88168 1.25304 0.94522 0.99132 0.97443 1.70102 1.16990 1.21556 1.39153 0.86150 0.79752 0.80000 0.79735 1.19647 1.20898 1.19697 1.20506 0.83988 0.82959 0.89711 1.90564 1.55785 1.53312 1.48466 1.21090 1.04521 0.73756 0.97943 1.47168 1.13230 1.06131 1.67196 1.22473 0.93518 0.86066 1.04074 1.20919 0.81152 0.91465 0.74935 1.90776 1.64908 1.30654 1.49163 1.46240 1.16402 1.08470 1.61548 1.21755 0.92787 0.88041 1.02473 1.15778 0.84753 0.80414 0.78547 1.90950 1.24470 1.76278 1.50006 0.78547 0.88108 0.91436 0.91675 0.87020 0.87290 0.86032 0.85734 0.91186 0.89322 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.92 19.25 29.55 0.57 -5.35 16 2 C -0.10 -2.40 11.42 -37.12 -0.42 -2.82 16 3 C 0.24 5.72 5.06 -6.83 -0.03 5.69 16 4 N -0.43 -10.21 2.60 -117.93 -0.31 -10.52 16 5 C -0.36 -8.25 9.06 -14.93 -0.14 -8.38 16 6 H 0.10 2.12 6.61 -52.49 -0.35 1.77 16 7 C 0.04 1.02 4.84 -17.47 -0.08 0.93 16 8 N -0.84 -20.63 9.58 55.50 0.53 -20.10 16 9 Si 0.92 18.04 29.60 -169.99 -5.03 13.01 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 C 0.44 10.01 7.64 -10.98 -0.08 9.93 16 14 O -0.60 -15.08 16.11 5.55 0.09 -14.99 16 15 C 0.15 2.71 5.12 -5.19 -0.03 2.68 16 16 N -0.60 -10.02 2.51 -181.39 -0.45 -10.47 16 17 C 0.06 0.86 7.66 -4.32 -0.03 0.82 16 18 C 0.53 7.50 8.31 -10.56 -0.09 7.42 16 19 O -0.48 -7.60 17.75 5.59 0.10 -7.50 16 20 N -0.58 -8.54 3.00 -128.17 -0.39 -8.93 16 21 C 0.09 1.02 10.73 59.84 0.64 1.66 16 22 C 0.70 12.44 8.31 -88.01 -0.73 11.71 16 23 O -0.54 -11.27 17.15 5.34 0.09 -11.18 16 24 H 0.20 3.52 7.80 -54.08 -0.42 3.10 16 25 H 0.10 2.38 6.63 -51.93 -0.34 2.03 16 26 H 0.07 1.55 7.61 -51.93 -0.40 1.15 16 27 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 28 H 0.11 1.75 8.10 -51.93 -0.42 1.33 16 29 H 0.11 1.92 7.55 -51.93 -0.39 1.53 16 30 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.00 7.86 -51.93 -0.41 0.60 16 34 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -31.83 309.94 -4.67 -36.50 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.55 Total: 5.21 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: -0.43 Total: 24.29 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.61 Total: -50.01 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: 0.28 Total: -33.67 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.83 -4.67 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.712 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds