Wall clock time and date at job start Tue Mar 31 2020 00:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46963 * 108.96387 * 3 2 1 5 5 C 1.37101 * 119.99552 * 263.88193 * 4 3 2 6 6 H 1.08001 * 119.99611 * 200.35318 * 5 4 3 7 7 C 1.38946 * 120.00125 * 20.36487 * 5 4 3 8 8 N 1.31414 * 120.00131 * 21.28539 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 201.29255 * 7 5 4 10 10 H 1.48501 * 109.47246 * 59.99691 * 9 7 5 11 11 H 1.48498 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47003 * 299.99781 * 9 7 5 13 13 C 1.34774 * 119.99903 * 83.88584 * 4 3 2 14 14 O 1.21287 * 120.00263 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99392 * 179.97438 * 13 4 3 16 16 N 1.46509 * 109.46404 * 180.02562 * 15 13 4 17 17 C 1.47311 * 126.69013 * 269.97996 * 16 15 13 18 18 C 1.51582 * 103.59151 * 179.84449 * 17 16 15 19 19 O 1.21238 * 127.15461 * 180.23977 * 18 17 16 20 20 N 1.34762 * 105.68684 * 0.32287 * 18 17 16 21 21 C 1.46496 * 124.18029 * 179.97438 * 20 18 17 22 22 C 1.33801 * 111.64501 * 359.65729 * 20 18 17 23 23 O 1.21534 * 123.77269 * 180.22917 * 22 20 18 24 24 H 4.40646 * 5.51483 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47260 * 348.96175 * 3 2 1 26 26 H 1.08999 * 109.46786 * 228.96460 * 3 2 1 27 27 H 0.97004 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47224 * 60.00292 * 15 13 4 29 29 H 1.08994 * 109.47472 * 299.99853 * 15 13 4 30 30 H 1.09006 * 110.59824 * 298.57095 * 17 16 15 31 31 H 1.09000 * 110.59524 * 61.50998 * 17 16 15 32 32 H 1.08991 * 109.47808 * 269.70198 * 21 20 18 33 33 H 1.08999 * 109.47144 * 149.69954 * 21 20 18 34 34 H 1.09006 * 109.46877 * 29.70766 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4498 -1.3063 5 6 3.4823 -0.4703 -2.2612 6 1 4.1332 -0.1847 -3.0743 7 6 2.9976 -1.7702 -2.1830 8 7 1.9150 -2.0268 -1.4837 9 14 3.8850 -3.1529 -3.0718 10 1 5.2756 -3.2572 -2.5614 11 1 3.1726 -4.4334 -2.8312 12 1 3.9126 -2.8674 -4.5288 13 6 3.2409 1.7673 -1.5692 14 8 2.9334 2.5812 -0.7242 15 6 3.7436 2.2291 -2.9128 16 7 3.7674 3.6936 -2.9480 17 6 2.6747 4.5815 -3.3810 18 6 3.2533 5.9712 -3.2035 19 8 2.7048 7.0277 -3.4336 20 7 4.5049 5.7881 -2.7386 21 6 5.4339 6.8766 -2.4252 22 6 4.7919 4.4895 -2.5921 23 8 5.8589 4.0754 -2.1833 24 1 -1.0501 0.0001 0.0002 25 1 3.0098 -1.0078 0.1968 26 1 3.0090 0.6755 0.7752 27 1 1.5764 -2.9342 -1.4294 28 1 3.0825 1.8572 -3.6955 29 1 4.7508 1.8457 -3.0753 30 1 2.4227 4.3982 -4.4256 31 1 1.7990 4.4498 -2.7455 32 1 6.0225 7.1182 -3.3101 33 1 6.0994 6.5658 -1.6199 34 1 4.8709 7.7560 -2.1121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861520772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:13 Heat of formation + Delta-G solvation = -13.140105 kcal Electronic energy + Delta-G solvation = -21815.389245 eV Core-core repulsion = 18330.516189 eV Total energy + Delta-G solvation = -3484.873056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.30977 -40.53958 -39.63617 -37.36819 -36.95567 -36.03850 -33.80489 -33.30856 -31.28466 -28.72070 -28.09522 -27.30103 -26.08994 -23.53736 -21.70568 -20.95487 -19.67714 -18.78128 -18.54024 -18.03687 -17.74919 -17.58760 -16.71011 -16.43422 -16.13018 -15.88466 -15.51467 -15.27862 -15.01117 -14.97916 -14.42371 -14.27347 -13.83364 -13.67760 -13.50741 -13.35324 -12.88800 -12.73101 -12.48445 -12.14124 -12.01679 -11.36078 -11.23000 -11.17378 -10.91674 -10.77407 -10.60582 -9.86181 -9.77207 -8.25346 -5.92006 0.56277 1.03349 1.46645 1.56453 1.63131 1.83657 1.93370 1.97007 2.17482 2.35972 2.43982 3.04532 3.10922 3.21660 3.73979 3.92398 4.17284 4.26580 4.34427 4.37133 4.43565 4.50669 4.53366 4.71210 4.74503 4.87875 4.91139 5.30091 5.40233 5.49107 5.77490 6.05333 6.29162 6.37378 6.97740 7.11945 7.15817 7.51225 7.92831 8.73006 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.005113 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.661243 B = 5475.203910 C = 6042.568355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.146 4.146 3 C 0.244 3.756 4 N -0.441 5.441 5 C -0.371 4.371 6 H 0.119 0.881 7 C 0.006 3.994 8 N -0.871 5.871 9 Si 0.984 3.016 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.260 1.260 13 C 0.429 3.571 14 O -0.630 6.630 15 C 0.161 3.839 16 N -0.604 5.604 17 C 0.066 3.934 18 C 0.533 3.467 19 O -0.497 6.497 20 N -0.580 5.580 21 C 0.083 3.917 22 C 0.698 3.302 23 O -0.582 6.582 24 H 0.234 0.766 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.270 0.730 28 H 0.141 0.859 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 7.590 -6.210 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.147 4.147 3 C 0.122 3.878 4 N -0.159 5.159 5 C -0.497 4.497 6 H 0.137 0.863 7 C -0.199 4.199 8 N -0.506 5.506 9 Si 0.808 3.192 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.184 1.184 13 C 0.218 3.782 14 O -0.518 6.518 15 C 0.037 3.963 16 N -0.339 5.339 17 C -0.058 4.058 18 C 0.322 3.678 19 O -0.369 6.369 20 N -0.325 5.325 21 C -0.057 4.057 22 C 0.400 3.600 23 O -0.459 6.459 24 H 0.251 0.749 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.131 0.869 30 H 0.183 0.817 31 H 0.141 0.859 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.083 8.072 -5.643 10.067 hybrid contribution 0.035 -1.014 0.141 1.024 sum 2.117 7.058 -5.502 9.197 Atomic orbital electron populations 1.25076 0.96284 1.04333 1.01415 1.23383 0.94987 0.97222 0.99122 1.17874 0.84819 0.99392 0.85764 1.43865 1.55366 1.04583 1.12120 1.19981 1.29988 0.91249 1.08472 0.86312 1.26076 0.94796 1.00922 0.98113 1.70220 1.18215 1.21647 1.40520 0.85131 0.78161 0.76785 0.79151 1.19737 1.21622 1.18446 1.21355 0.83355 0.82350 0.91126 1.90530 1.57229 1.54013 1.50012 1.21007 1.05002 0.74625 0.95667 1.47234 1.14009 1.05979 1.66727 1.22727 0.92086 0.84603 1.06422 1.20980 0.80798 0.91630 0.74359 1.90779 1.65041 1.31212 1.49876 1.46329 1.17122 1.08006 1.61074 1.22021 0.92749 0.87430 1.03475 1.15992 0.84495 0.81329 0.78177 1.90915 1.26062 1.77116 1.51768 0.74943 0.89052 0.92209 0.91986 0.84176 0.86944 0.81735 0.85903 0.89034 0.89796 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.84 19.25 74.32 1.43 -9.40 16 2 C -0.15 -6.99 11.42 31.13 0.36 -6.63 16 3 C 0.24 11.78 5.06 84.57 0.43 12.20 16 4 N -0.44 -20.93 2.60 -645.41 -1.68 -22.60 16 5 C -0.37 -16.78 9.06 84.04 0.76 -16.02 16 6 H 0.12 4.79 6.61 -2.91 -0.02 4.77 16 7 C 0.01 0.28 4.84 84.92 0.41 0.69 16 8 N -0.87 -42.44 9.58 21.66 0.21 -42.23 16 9 Si 0.98 36.16 29.60 68.60 2.03 38.19 16 10 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.29 -10.91 7.11 99.48 0.71 -10.21 16 12 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 13 C 0.43 19.41 7.64 87.66 0.67 20.08 16 14 O -0.63 -32.22 16.11 -3.05 -0.05 -32.27 16 15 C 0.16 5.54 5.12 85.63 0.44 5.98 16 16 N -0.60 -19.19 2.51 -846.21 -2.12 -21.31 16 17 C 0.07 1.59 7.66 85.76 0.66 2.25 16 18 C 0.53 14.16 8.31 87.94 0.73 14.89 16 19 O -0.50 -14.61 17.75 -2.90 -0.05 -14.66 16 20 N -0.58 -16.30 3.00 -796.66 -2.39 -18.69 16 21 C 0.08 1.76 10.73 127.77 1.37 3.13 16 22 C 0.70 24.13 8.31 179.44 1.49 25.62 16 23 O -0.58 -24.15 17.15 -3.82 -0.07 -24.22 16 24 H 0.23 7.74 7.80 -4.41 -0.03 7.70 16 25 H 0.09 4.46 6.63 -2.39 -0.02 4.45 16 26 H 0.06 2.87 7.61 -2.39 -0.02 2.86 16 27 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 28 H 0.14 4.00 8.10 -2.39 -0.02 3.98 16 29 H 0.11 3.81 7.55 -2.39 -0.02 3.79 16 30 H 0.17 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.86 7.86 -2.39 -0.02 1.84 16 34 H 0.10 1.80 8.00 -2.38 -0.02 1.78 16 Total: -1.00 -68.31 309.94 5.76 -62.55 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 1.13 Total: 22.46 kcal Atomic # 6 Polarization: 44.04 SS G_CDS: 8.75 Total: 52.79 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.98 Total: -104.84 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -0.17 Total: -71.15 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -68.31 5.76 -62.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.408 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds