Wall clock time and date at job start Tue Mar 31 2020 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 5 5 C 1.50704 * 109.46906 * 294.99861 * 4 2 1 6 6 H 1.08004 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00078 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99828 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47571 * 89.99527 * 9 7 5 11 11 H 1.48501 * 109.47251 * 210.00218 * 9 7 5 12 12 H 1.48503 * 109.47128 * 329.99666 * 9 7 5 13 13 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 14 14 N 1.46898 * 109.46764 * 65.00211 * 13 2 1 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.53002 * 115.55130 * 34.33536 * 16 15 14 18 18 C 1.53006 * 117.49936 * 248.61944 * 16 15 14 19 19 C 1.53000 * 60.00083 * 252.51494 * 18 16 15 20 20 Cl 1.80306 * 117.49993 * 252.51121 * 19 18 16 21 21 Cl 1.80302 * 117.49911 * 107.48943 * 19 18 16 22 22 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 23 23 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 24 24 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47153 * 54.99452 * 4 2 1 26 26 H 1.08992 * 109.47216 * 174.99961 * 4 2 1 27 27 H 0.97001 * 120.00023 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.47210 * 305.00164 * 13 2 1 29 29 H 1.08997 * 109.46954 * 185.00148 * 13 2 1 30 30 H 1.00902 * 111.00533 * 56.04323 * 14 13 2 31 31 H 1.09000 * 109.47033 * 300.00113 * 15 14 13 32 32 H 1.09001 * 109.46544 * 60.00058 * 15 14 13 33 33 H 1.09000 * 109.47245 * 85.57870 * 17 16 15 34 34 H 1.09000 * 109.46674 * 205.57878 * 17 16 15 35 35 H 1.09000 * 109.47200 * 325.57529 * 17 16 15 36 36 H 1.08996 * 117.49984 * 0.02562 * 18 16 15 37 37 H 1.09004 * 117.49682 * 145.02599 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4985 0.5626 5.2496 10 1 0.1715 0.0935 5.7233 11 1 2.5080 0.3534 6.3184 12 1 1.4226 2.0078 4.9166 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6672 16 6 1.7024 0.1909 -4.8892 17 6 1.6828 1.7083 -4.6936 18 6 0.6454 -0.4164 -5.8138 19 6 2.1046 -0.3386 -6.2672 20 17 2.5184 0.8733 -7.5365 21 17 3.0411 -1.8782 -6.3266 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6053 -1.7198 1.2952 26 1 3.1262 -0.7995 1.2056 27 1 2.9236 -1.8417 4.7317 28 1 1.6054 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.9882 0.9873 -2.3967 31 1 3.2128 -0.7038 -3.6400 32 1 1.6921 -1.6246 -3.7300 33 1 2.6791 2.1110 -4.8761 34 1 0.9764 2.1556 -5.3928 35 1 1.3790 1.9391 -3.6726 36 1 0.2513 -1.3982 -5.5512 37 1 -0.0644 0.2650 -6.2828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877565329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:31 Heat of formation + Delta-G solvation = -7.315283 kcal Electronic energy + Delta-G solvation = -17413.284948 eV Core-core repulsion = 14470.481134 eV Total energy + Delta-G solvation = -2942.803814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.19169 -36.81697 -36.26115 -35.84350 -33.59819 -31.83130 -28.83367 -27.18396 -26.32304 -24.29417 -22.63617 -22.16228 -19.66620 -18.88949 -16.68087 -16.34829 -15.65470 -15.36426 -14.59833 -14.19460 -13.99694 -13.78955 -13.34617 -13.13783 -12.64555 -12.38919 -12.17105 -12.02186 -11.78583 -11.61229 -11.47859 -11.36654 -11.33776 -11.08042 -10.84777 -10.79188 -10.40986 -10.29427 -10.20538 -9.90820 -9.70970 -9.15865 -8.96300 -8.33302 -8.21057 -5.97947 -3.99166 0.92232 1.93933 2.89702 3.32847 3.39248 3.42234 3.80732 4.03021 4.40120 4.49923 4.69794 4.74361 5.25725 5.35709 5.37977 5.42302 5.53409 5.62123 5.70315 5.76325 5.85057 6.03198 6.13354 6.38504 6.51771 6.66095 6.97552 7.15295 7.17171 7.29027 7.54657 7.69005 7.84446 8.02149 8.45895 9.07264 9.64325 11.13597 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.002994 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.706967 B = 9348.442469 C = 9693.957143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.683 5.683 15 C 0.090 3.910 16 C -0.075 4.075 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.002 4.002 20 Cl -0.099 7.099 21 Cl -0.097 7.097 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.339 0.661 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 3.223 -22.220 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.040 4.040 16 C -0.077 4.077 17 C -0.183 4.183 18 C -0.170 4.170 19 C -0.054 4.054 20 Cl -0.072 7.072 21 Cl -0.070 7.070 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.159 0.841 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.470 2.796 -22.224 22.535 hybrid contribution 0.938 0.455 0.702 1.257 sum -1.532 3.251 -21.522 21.820 Atomic orbital electron populations 1.21589 0.95667 1.00593 1.00147 1.21202 0.96034 0.98904 0.93958 0.92814 1.19121 0.95926 0.95585 0.90414 1.21234 1.34576 1.08326 0.90980 0.92556 1.25021 0.95320 0.95109 0.99111 1.69963 1.39063 1.21264 1.23379 0.86631 0.78225 0.80426 0.82941 1.20714 1.21335 1.19903 1.22176 0.97369 0.97783 0.89204 1.60661 1.63955 1.05882 1.01102 1.21513 0.97970 0.96891 0.87583 1.22395 0.98586 0.97892 0.88790 1.21503 1.02764 0.89970 1.04068 1.24161 0.89041 1.04581 0.99186 1.27181 0.98382 0.85684 0.94109 1.98736 1.94706 1.57534 1.56265 1.98750 1.76339 1.33508 1.98373 0.92777 0.93926 0.94162 0.96553 0.96920 0.93093 0.91416 0.95557 0.84096 0.94019 0.90119 0.91391 0.91547 0.89365 0.86138 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.89 37.16 0.33 -1.96 16 2 C -0.08 -1.62 2.48 -90.62 -0.22 -1.84 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.21 8.41 -34.44 -0.29 -14.50 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.06 1.03 5.08 -3.82 -0.02 1.01 16 14 N -0.68 -8.97 5.57 -113.78 -0.63 -9.61 16 15 C 0.09 1.02 4.91 -3.82 -0.02 1.00 16 16 C -0.07 -0.71 2.57 -154.50 -0.40 -1.10 16 17 C -0.13 -1.08 8.57 37.16 0.32 -0.76 16 18 C -0.13 -1.08 9.51 -26.73 -0.25 -1.33 16 19 C 0.00 -0.02 3.61 -26.73 -0.10 -0.11 16 20 Cl -0.10 -0.94 28.32 -51.86 -1.47 -2.41 16 21 Cl -0.10 -1.00 28.32 -51.86 -1.47 -2.47 16 22 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 23 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.34 4.17 6.55 -39.29 -0.26 3.91 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 35 H 0.09 0.79 5.84 -51.93 -0.30 0.49 16 36 H 0.12 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.12 0.82 8.05 -51.93 -0.42 0.40 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -29.01 329.76 -9.63 -38.63 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.87 Total: -1.94 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -0.87 Total: -17.57 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.10 Total: -35.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -2.94 Total: -4.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.01 -9.63 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877565329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.317 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds