Wall clock time and date at job start Tue Mar 31 2020 00:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 5 5 C 1.50704 * 109.46906 * 294.99861 * 4 2 1 6 6 H 1.08004 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00078 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99828 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47571 * 89.99527 * 9 7 5 11 11 H 1.48501 * 109.47251 * 210.00218 * 9 7 5 12 12 H 1.48503 * 109.47128 * 329.99666 * 9 7 5 13 13 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 14 14 N 1.46898 * 109.46764 * 65.00211 * 13 2 1 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.53002 * 115.55130 * 34.33536 * 16 15 14 18 18 C 1.53006 * 117.49936 * 248.61944 * 16 15 14 19 19 C 1.53000 * 60.00083 * 252.51494 * 18 16 15 20 20 Cl 1.80306 * 117.49993 * 252.51121 * 19 18 16 21 21 Cl 1.80302 * 117.49911 * 107.48943 * 19 18 16 22 22 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 23 23 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 24 24 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47153 * 54.99452 * 4 2 1 26 26 H 1.08992 * 109.47216 * 174.99961 * 4 2 1 27 27 H 0.97001 * 120.00023 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.47210 * 305.00164 * 13 2 1 29 29 H 1.08997 * 109.46954 * 185.00148 * 13 2 1 30 30 H 1.00902 * 111.00533 * 56.04323 * 14 13 2 31 31 H 1.09000 * 109.47033 * 300.00113 * 15 14 13 32 32 H 1.09001 * 109.46544 * 60.00058 * 15 14 13 33 33 H 1.09000 * 109.47245 * 85.57870 * 17 16 15 34 34 H 1.09000 * 109.46674 * 205.57878 * 17 16 15 35 35 H 1.09000 * 109.47200 * 325.57529 * 17 16 15 36 36 H 1.08996 * 117.49984 * 0.02562 * 18 16 15 37 37 H 1.09004 * 117.49682 * 145.02599 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4985 0.5626 5.2496 10 1 0.1715 0.0935 5.7233 11 1 2.5080 0.3534 6.3184 12 1 1.4226 2.0078 4.9166 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6672 16 6 1.7024 0.1909 -4.8892 17 6 1.6828 1.7083 -4.6936 18 6 0.6454 -0.4164 -5.8138 19 6 2.1046 -0.3386 -6.2672 20 17 2.5184 0.8733 -7.5365 21 17 3.0411 -1.8782 -6.3266 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6053 -1.7198 1.2952 26 1 3.1262 -0.7995 1.2056 27 1 2.9236 -1.8417 4.7317 28 1 1.6054 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.9882 0.9873 -2.3967 31 1 3.2128 -0.7038 -3.6400 32 1 1.6921 -1.6246 -3.7300 33 1 2.6791 2.1110 -4.8761 34 1 0.9764 2.1556 -5.3928 35 1 1.3790 1.9391 -3.6726 36 1 0.2513 -1.3982 -5.5512 37 1 -0.0644 0.2650 -6.2828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877565329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:30 Heat of formation + Delta-G solvation = -22.799099 kcal Electronic energy + Delta-G solvation = -17413.956377 eV Core-core repulsion = 14470.481134 eV Total energy + Delta-G solvation = -2943.475243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.99516 -38.08622 -37.01269 -36.81155 -35.21358 -33.61330 -29.66403 -28.90057 -27.63226 -25.83518 -23.91800 -23.23420 -20.98414 -19.97764 -18.48075 -17.46337 -16.67898 -16.60014 -16.31833 -15.40770 -15.25245 -14.90088 -14.34972 -14.17115 -14.08560 -13.76747 -13.34969 -13.21588 -12.98059 -12.76540 -12.70360 -12.58655 -12.44391 -12.39108 -12.17488 -12.13909 -11.94803 -11.83645 -11.47350 -11.08410 -11.05816 -10.93208 -10.59116 -10.51802 -9.34772 -8.15911 -6.24849 0.19096 1.19881 1.41822 1.42568 1.53420 2.17466 2.43535 3.00231 3.17847 3.32813 3.44813 3.86368 3.97830 4.20018 4.33787 4.55349 4.60656 4.65278 4.68620 4.82666 4.89951 4.93688 4.96678 4.99831 5.06536 5.31477 5.34211 5.50405 5.55540 5.58642 5.84281 5.91406 6.01091 6.32807 6.46911 6.91760 7.43575 8.96192 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.002994 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.706967 B = 9348.442469 C = 9693.957143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.056 0.944 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.076 3.924 14 N -0.675 5.675 15 C 0.093 3.907 16 C -0.079 4.079 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.006 4.006 20 Cl -0.099 7.099 21 Cl -0.110 7.110 22 H 0.036 0.964 23 H 0.071 0.929 24 H 0.033 0.967 25 H -0.011 1.011 26 H -0.015 1.015 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.017 0.983 30 H 0.347 0.653 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 4.621 -23.085 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.186 1.186 13 C -0.053 4.053 14 N -0.308 5.308 15 C -0.036 4.036 16 C -0.081 4.081 17 C -0.181 4.181 18 C -0.156 4.156 19 C -0.058 4.058 20 Cl -0.072 7.072 21 Cl -0.083 7.083 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.053 0.947 25 H 0.007 0.993 26 H 0.003 0.997 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.167 0.833 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.664 4.211 -23.111 23.775 hybrid contribution 1.329 0.006 0.924 1.619 sum -2.335 4.217 -22.187 22.704 Atomic orbital electron populations 1.21489 0.94494 1.00377 1.00658 1.21007 0.96848 0.98451 0.92922 0.92580 1.19024 0.94050 0.94710 0.92861 1.21659 1.34230 1.08617 0.92036 0.91933 1.25953 0.95302 0.96111 1.02685 1.70102 1.40400 1.23036 1.24220 0.85517 0.77932 0.79384 0.78655 1.19942 1.21114 1.18608 1.21854 0.96595 0.97483 0.89365 1.60577 1.63795 1.06012 1.00429 1.21470 0.97551 0.97093 0.87514 1.22317 0.99640 0.98195 0.87932 1.21502 1.03126 0.89249 1.04201 1.24307 0.88543 1.05116 0.97665 1.27270 0.99228 0.85224 0.94042 1.98738 1.94794 1.57458 1.56221 1.98751 1.76785 1.34347 1.98399 0.94469 0.91043 0.94739 0.99254 0.99685 0.93009 0.91904 0.96450 0.83258 0.94728 0.90295 0.91462 0.90323 0.89649 0.85573 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.09 8.89 71.98 0.64 -3.45 16 2 C -0.07 -2.87 2.48 -10.79 -0.03 -2.90 16 3 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.03 1.61 4.45 29.85 0.13 1.75 16 5 C -0.53 -29.49 8.41 25.60 0.22 -29.27 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 9 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 13 C 0.08 2.47 5.08 86.31 0.44 2.91 16 14 N -0.67 -16.62 5.57 -513.88 -2.86 -19.48 16 15 C 0.09 1.98 4.91 86.30 0.42 2.40 16 16 C -0.08 -1.33 2.57 -52.18 -0.13 -1.46 16 17 C -0.12 -1.83 8.57 71.98 0.62 -1.21 16 18 C -0.12 -1.63 9.51 30.60 0.29 -1.34 16 19 C -0.01 -0.10 3.61 30.60 0.11 0.01 16 20 Cl -0.10 -1.70 28.32 -2.72 -0.08 -1.77 16 21 Cl -0.11 -2.17 28.32 -2.72 -0.08 -2.25 16 22 H 0.04 1.45 6.95 -2.39 -0.02 1.43 16 23 H 0.07 2.17 7.75 -2.39 -0.02 2.15 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.35 7.85 6.55 -89.69 -0.59 7.26 16 31 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.72 7.90 -2.39 -0.02 1.70 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.98 7.90 -2.39 -0.02 0.96 16 35 H 0.08 1.32 5.84 -2.39 -0.01 1.31 16 36 H 0.13 1.63 8.05 -2.39 -0.02 1.62 16 37 H 0.14 1.41 8.05 -2.39 -0.02 1.39 16 Total: -1.00 -62.25 329.76 2.93 -59.33 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.46 Total: 7.21 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 3.17 Total: -32.31 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -2.58 Total: -76.44 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -3.86 SS G_CDS: -0.15 Total: -4.02 kcal Total: -62.25 2.93 -59.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877565329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.529 kcal (2) G-P(sol) polarization free energy of solvation -62.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds