Wall clock time and date at job start Tue Mar 31 2020 00:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00214 * 2 1 4 4 O 1.21607 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.47458 * 120.00181 * 179.97438 * 3 2 1 6 6 C 1.41596 * 120.25647 * 0.02580 * 5 3 2 7 7 C 1.35971 * 119.00969 * 179.97438 * 6 5 3 8 8 C 1.40761 * 119.50175 * 359.78170 * 7 6 5 9 9 O 1.21958 * 119.75197 * 180.22111 * 8 7 6 10 10 N 1.34543 * 120.49571 * 0.47075 * 8 7 6 11 11 C 1.46507 * 119.47155 * 179.77143 * 10 8 7 12 12 C 1.50697 * 109.47005 * 269.72546 * 11 10 8 13 13 O 1.21291 * 120.00763 * 359.73081 * 12 11 10 14 14 N 1.34784 * 119.99774 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99968 * 179.72830 * 14 12 11 16 16 H 1.08005 * 120.00127 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00107 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00407 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46940 * 60.00199 * 19 17 15 21 21 H 1.48496 * 109.47341 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47121 * 300.00728 * 19 17 15 23 23 C 1.34598 * 121.04812 * 359.50102 * 10 8 7 24 24 H 1.09009 * 109.47094 * 59.99952 * 1 2 3 25 25 H 1.08996 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47253 * 299.99881 * 1 2 3 27 27 H 0.96998 * 120.00248 * 179.97438 * 2 1 3 28 28 H 1.08004 * 120.49673 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.24913 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46566 * 149.73342 * 11 10 8 31 31 H 1.08993 * 109.47390 * 29.73131 * 11 10 8 32 32 H 0.97005 * 119.99846 * 359.72750 * 14 12 11 33 33 H 0.96990 * 120.00373 * 180.02562 * 18 17 15 34 34 H 1.07999 * 119.76823 * 180.25508 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2204 -0.0005 5 6 3.6135 1.1672 0.0006 6 6 4.3269 -0.0559 0.0006 7 6 5.6863 -0.0263 0.0006 8 6 6.3527 1.2136 -0.0041 9 8 7.5718 1.2454 -0.0082 10 7 5.6547 2.3638 0.0010 11 6 6.3713 3.6417 0.0011 12 6 6.6163 4.0801 1.4219 13 8 6.2262 3.3953 2.3438 14 7 7.2639 5.2363 1.6682 15 6 7.4819 5.6379 2.9607 16 1 7.1344 5.0280 3.7816 17 6 8.1500 6.8295 3.2147 18 7 8.5723 7.5718 2.2159 19 14 8.4465 7.3772 4.9758 20 1 9.2576 6.3535 5.6825 21 1 9.1734 8.6720 4.9758 22 1 7.1436 7.5414 5.6691 23 6 4.3088 2.3591 0.0006 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9500 -0.8400 0.0004 28 1 3.7992 -0.9982 -0.0003 29 1 6.2505 -0.9472 0.0002 30 1 5.7728 4.3938 -0.5131 31 1 7.3254 3.5233 -0.5124 32 1 7.5757 5.7841 0.9309 33 1 9.0390 8.4034 2.3931 34 1 3.7693 3.2948 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116009245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:23 Heat of formation + Delta-G solvation = -67.120917 kcal Electronic energy + Delta-G solvation = -21096.521437 eV Core-core repulsion = 17609.307598 eV Total energy + Delta-G solvation = -3487.213839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47769 -39.55217 -38.13478 -36.64147 -34.95347 -34.43703 -33.88484 -31.41705 -30.18661 -28.63345 -26.95181 -24.88220 -23.88350 -23.15059 -20.95023 -19.74578 -18.49632 -17.93222 -17.50331 -16.68078 -16.63443 -15.75061 -15.64450 -15.35619 -14.94770 -14.42128 -14.31816 -14.12605 -13.92795 -13.74847 -13.10271 -13.05448 -12.69375 -12.54566 -12.07529 -11.78771 -11.69212 -11.57873 -11.09160 -10.50632 -10.40313 -10.29941 -10.11853 -9.85387 -9.63540 -9.32245 -8.66927 -8.11972 -7.89376 -6.53083 -3.94744 0.86215 1.37214 2.53770 3.00298 3.13398 3.16720 3.21671 3.26376 3.66090 3.79843 4.10074 4.58563 4.64443 4.66303 4.77783 4.83336 5.01446 5.08950 5.18984 5.30036 5.39219 5.56643 5.61449 5.85910 5.90873 6.03882 6.08031 6.20237 6.43071 7.07837 7.31861 7.45052 7.88591 8.09146 8.12390 8.42877 9.03308 9.34653 9.83599 10.63703 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.004055 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.031215 B = 6903.770237 C = 7575.218017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.736 5.736 3 C 0.582 3.418 4 O -0.546 6.546 5 C -0.278 4.278 6 C 0.001 3.999 7 C -0.243 4.243 8 C 0.522 3.478 9 O -0.533 6.533 10 N -0.460 5.460 11 C 0.070 3.930 12 C 0.422 3.578 13 O -0.585 6.585 14 N -0.547 5.547 15 C -0.304 4.304 16 H 0.104 0.896 17 C 0.027 3.973 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.243 3.757 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.400 0.600 28 H 0.132 0.868 29 H 0.152 0.848 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.395 0.605 33 H 0.275 0.725 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 -13.080 -8.578 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.388 5.388 3 C 0.371 3.629 4 O -0.425 6.425 5 C -0.287 4.287 6 C -0.021 4.021 7 C -0.264 4.264 8 C 0.323 3.677 9 O -0.413 6.413 10 N -0.164 5.164 11 C -0.055 4.055 12 C 0.206 3.794 13 O -0.470 6.470 14 N -0.182 5.182 15 C -0.433 4.433 16 H 0.122 0.878 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.107 3.893 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.235 0.765 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.229 0.771 33 H 0.085 0.915 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.640 -12.537 -7.961 18.869 hybrid contribution 0.538 0.215 0.492 0.760 sum -11.102 -12.322 -7.469 18.190 Atomic orbital electron populations 1.21517 0.79318 1.02075 1.02482 1.45581 1.07694 1.08536 1.77027 1.17653 0.86304 0.83620 0.75337 1.90796 1.69965 1.31057 1.50650 1.19090 0.93285 0.92889 1.23425 1.21265 0.94080 0.96742 0.89981 1.21896 0.94769 0.97431 1.12340 1.17224 0.88111 0.83951 0.78412 1.90946 1.12733 1.86760 1.50848 1.44904 1.06095 1.09664 1.55756 1.21964 1.00374 0.83348 0.99842 1.19703 0.86027 0.84436 0.89192 1.90579 1.56094 1.55363 1.44967 1.41746 1.48771 1.18402 1.09274 1.19681 1.34730 1.04929 0.83956 0.87773 1.25312 0.96387 0.95903 0.99978 1.69593 1.38158 1.14304 1.31516 0.85861 0.78781 0.77809 0.81492 1.19731 1.20791 1.19723 1.22277 0.82759 1.00354 0.83925 0.92183 0.90745 0.92112 0.76530 0.84986 0.83076 0.86947 0.86062 0.77132 0.91506 0.80708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.84 0.64 1.29 16 2 N -0.74 -6.44 5.67 -68.17 -0.39 -6.83 16 3 C 0.58 7.44 7.76 -12.50 -0.10 7.34 16 4 O -0.55 -8.90 16.32 5.27 0.09 -8.81 16 5 C -0.28 -3.58 5.88 -104.95 -0.62 -4.20 16 6 C 0.00 0.01 9.57 -39.12 -0.37 -0.36 16 7 C -0.24 -3.31 9.97 -39.44 -0.39 -3.70 16 8 C 0.52 9.39 7.40 -15.41 -0.11 9.28 16 9 O -0.53 -11.56 16.58 4.96 0.08 -11.48 16 10 N -0.46 -7.74 2.04 -120.60 -0.25 -7.98 16 11 C 0.07 1.20 5.79 -5.19 -0.03 1.17 16 12 C 0.42 9.90 7.85 -10.98 -0.09 9.81 16 13 O -0.58 -16.02 16.01 5.55 0.09 -15.93 16 14 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 15 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 16 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 17 C 0.03 0.72 5.50 -17.47 -0.10 0.62 16 18 N -0.90 -23.90 13.05 55.50 0.72 -23.17 16 19 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.24 3.56 9.85 -16.43 -0.16 3.40 16 24 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.40 2.28 6.89 -40.82 -0.28 2.00 16 28 H 0.13 0.84 6.48 -52.48 -0.34 0.50 16 29 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.11 1.47 8.00 -51.93 -0.42 1.05 16 31 H 0.12 2.03 7.36 -51.93 -0.38 1.65 16 32 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 33 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.18 2.37 7.57 -52.49 -0.40 1.97 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -36.77 307.90 -4.91 -41.67 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.34 Total: 9.60 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: -1.47 Total: 16.11 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.03 Total: -51.67 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: 0.26 Total: -36.22 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.77 -4.91 -41.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116009245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.446 kcal (2) G-P(sol) polarization free energy of solvation -36.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds