Wall clock time and date at job start Tue Mar 31 2020 00:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00214 * 2 1 4 4 O 1.21607 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.47458 * 120.00181 * 179.97438 * 3 2 1 6 6 C 1.41596 * 120.25647 * 0.02580 * 5 3 2 7 7 C 1.35971 * 119.00969 * 179.97438 * 6 5 3 8 8 C 1.40761 * 119.50175 * 359.78170 * 7 6 5 9 9 O 1.21958 * 119.75197 * 180.22111 * 8 7 6 10 10 N 1.34543 * 120.49571 * 0.47075 * 8 7 6 11 11 C 1.46507 * 119.47155 * 179.77143 * 10 8 7 12 12 C 1.50697 * 109.47005 * 269.72546 * 11 10 8 13 13 O 1.21291 * 120.00763 * 359.73081 * 12 11 10 14 14 N 1.34784 * 119.99774 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99968 * 179.72830 * 14 12 11 16 16 H 1.08005 * 120.00127 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00107 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00407 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46940 * 60.00199 * 19 17 15 21 21 H 1.48496 * 109.47341 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47121 * 300.00728 * 19 17 15 23 23 C 1.34598 * 121.04812 * 359.50102 * 10 8 7 24 24 H 1.09009 * 109.47094 * 59.99952 * 1 2 3 25 25 H 1.08996 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47253 * 299.99881 * 1 2 3 27 27 H 0.96998 * 120.00248 * 179.97438 * 2 1 3 28 28 H 1.08004 * 120.49673 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.24913 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46566 * 149.73342 * 11 10 8 31 31 H 1.08993 * 109.47390 * 29.73131 * 11 10 8 32 32 H 0.97005 * 119.99846 * 359.72750 * 14 12 11 33 33 H 0.96990 * 120.00373 * 180.02562 * 18 17 15 34 34 H 1.07999 * 119.76823 * 180.25508 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2204 -0.0005 5 6 3.6135 1.1672 0.0006 6 6 4.3269 -0.0559 0.0006 7 6 5.6863 -0.0263 0.0006 8 6 6.3527 1.2136 -0.0041 9 8 7.5718 1.2454 -0.0082 10 7 5.6547 2.3638 0.0010 11 6 6.3713 3.6417 0.0011 12 6 6.6163 4.0801 1.4219 13 8 6.2262 3.3953 2.3438 14 7 7.2639 5.2363 1.6682 15 6 7.4819 5.6379 2.9607 16 1 7.1344 5.0280 3.7816 17 6 8.1500 6.8295 3.2147 18 7 8.5723 7.5718 2.2159 19 14 8.4465 7.3772 4.9758 20 1 9.2576 6.3535 5.6825 21 1 9.1734 8.6720 4.9758 22 1 7.1436 7.5414 5.6691 23 6 4.3088 2.3591 0.0006 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9500 -0.8400 0.0004 28 1 3.7992 -0.9982 -0.0003 29 1 6.2505 -0.9472 0.0002 30 1 5.7728 4.3938 -0.5131 31 1 7.3254 3.5233 -0.5124 32 1 7.5757 5.7841 0.9309 33 1 9.0390 8.4034 2.3931 34 1 3.7693 3.2948 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116009245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:22 Heat of formation + Delta-G solvation = -96.468801 kcal Electronic energy + Delta-G solvation = -21097.794057 eV Core-core repulsion = 17609.307598 eV Total energy + Delta-G solvation = -3488.486459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.72879 -40.63499 -39.96473 -37.96989 -36.26368 -35.85585 -35.26131 -33.43242 -31.31232 -30.05909 -27.86430 -26.73322 -24.96027 -24.37430 -22.11649 -21.34052 -20.19249 -19.30548 -18.67971 -18.34526 -17.85210 -17.03667 -16.77631 -16.62415 -16.31360 -15.97951 -15.86213 -15.69959 -15.24939 -14.92784 -14.50858 -14.19043 -13.91502 -13.59795 -13.39097 -13.23183 -12.96850 -12.92357 -12.88978 -12.53032 -12.16183 -11.61884 -11.53860 -11.25572 -11.13102 -10.53701 -10.14741 -10.13920 -9.11720 -8.55596 -6.05980 -0.24822 0.26427 1.30384 1.33737 1.39563 1.50440 1.84049 1.90469 2.24198 2.31636 2.64035 3.05515 3.09656 3.50962 3.61313 3.77795 3.82532 3.94393 4.15718 4.16411 4.30054 4.55935 4.71261 4.85577 4.91434 4.99920 5.05348 5.30932 5.32700 5.45676 5.85300 5.87268 6.43255 6.54625 6.80191 6.99388 7.23151 7.36600 7.90346 8.60762 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.004055 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.031215 B = 6903.770237 C = 7575.218017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.716 5.716 3 C 0.579 3.421 4 O -0.586 6.586 5 C -0.264 4.264 6 C 0.030 3.970 7 C -0.256 4.256 8 C 0.501 3.499 9 O -0.589 6.589 10 N -0.465 5.465 11 C 0.080 3.920 12 C 0.420 3.580 13 O -0.628 6.628 14 N -0.555 5.555 15 C -0.341 4.341 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.912 5.912 19 Si 0.995 3.005 20 H -0.274 1.274 21 H -0.266 1.266 22 H -0.269 1.269 23 C 0.217 3.783 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.047 0.953 27 H 0.418 0.582 28 H 0.189 0.811 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.126 0.874 32 H 0.401 0.599 33 H 0.282 0.718 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.553 -14.625 -9.012 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.368 5.368 3 C 0.367 3.633 4 O -0.468 6.468 5 C -0.273 4.273 6 C 0.009 3.991 7 C -0.278 4.278 8 C 0.306 3.694 9 O -0.475 6.475 10 N -0.169 5.169 11 C -0.045 4.045 12 C 0.207 3.793 13 O -0.516 6.516 14 N -0.191 5.191 15 C -0.470 4.470 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.552 5.552 19 Si 0.818 3.182 20 H -0.199 1.199 21 H -0.190 1.190 22 H -0.194 1.194 23 C 0.083 3.917 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.066 0.934 27 H 0.256 0.744 28 H 0.206 0.794 29 H 0.189 0.811 30 H 0.175 0.825 31 H 0.144 0.856 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.324 -14.119 -8.430 21.165 hybrid contribution 0.879 0.597 0.589 1.215 sum -12.446 -13.522 -7.841 19.981 Atomic orbital electron populations 1.21722 0.77984 1.04565 1.01616 1.45499 1.08573 1.08010 1.74747 1.17685 0.86070 0.84228 0.75333 1.90787 1.70524 1.32806 1.52674 1.19403 0.93759 0.93172 1.20950 1.21728 0.92984 0.98060 0.86347 1.22054 0.95998 0.96219 1.13497 1.18027 0.87913 0.85407 0.78102 1.90905 1.14842 1.87470 1.54249 1.44863 1.06793 1.09073 1.56181 1.21887 1.02011 0.85026 0.95566 1.20714 0.84003 0.83170 0.91428 1.90534 1.57370 1.56375 1.47343 1.41784 1.49402 1.19223 1.08689 1.19631 1.36836 1.05887 0.84658 0.90336 1.26081 0.95432 0.95307 1.03906 1.69644 1.37958 1.14536 1.33044 0.84967 0.78721 0.77770 0.76773 1.19911 1.19043 1.19414 1.22543 0.81977 1.01770 0.85393 0.92725 0.86589 0.93382 0.74372 0.79380 0.81065 0.82470 0.85599 0.76440 0.90880 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.70 127.77 1.37 2.30 16 2 N -0.72 -9.78 5.67 -487.85 -2.76 -12.54 16 3 C 0.58 13.41 7.76 86.67 0.67 14.08 16 4 O -0.59 -18.49 16.32 -4.05 -0.07 -18.56 16 5 C -0.26 -6.22 5.88 -20.08 -0.12 -6.34 16 6 C 0.03 0.54 9.57 22.57 0.22 0.76 16 7 C -0.26 -6.53 9.97 22.36 0.22 -6.31 16 8 C 0.50 18.16 7.40 84.89 0.63 18.79 16 9 O -0.59 -26.49 16.58 -5.18 -0.09 -26.58 16 10 N -0.46 -15.67 2.04 -653.70 -1.33 -17.01 16 11 C 0.08 2.80 5.79 85.63 0.50 3.29 16 12 C 0.42 20.37 7.85 87.65 0.69 21.06 16 13 O -0.63 -35.77 16.01 -3.06 -0.05 -35.82 16 14 N -0.55 -28.59 5.29 -306.97 -1.62 -30.22 16 15 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 16 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 17 C -0.01 -0.33 5.50 84.93 0.47 0.14 16 18 N -0.91 -48.75 13.05 21.66 0.28 -48.47 16 19 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.22 6.24 9.85 84.21 0.83 7.07 16 24 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.42 2.53 6.89 -92.71 -0.64 1.89 16 28 H 0.19 1.22 6.48 -2.91 -0.02 1.20 16 29 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 30 H 0.16 3.97 8.00 -2.39 -0.02 3.95 16 31 H 0.13 4.32 7.36 -2.39 -0.02 4.30 16 32 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 33 H 0.28 14.06 8.31 -92.72 -0.77 13.29 16 34 H 0.18 4.86 7.57 -2.91 -0.02 4.83 16 Total: -1.00 -84.39 307.90 2.47 -81.92 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.20 Total: 26.14 kcal Atomic # 6 Polarization: 29.86 SS G_CDS: 6.28 Total: 36.14 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.44 Total: -108.23 kcal Atomic # 8 Polarization: -80.75 SS G_CDS: -0.20 Total: -80.95 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -84.39 2.47 -81.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116009245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.546 kcal (2) G-P(sol) polarization free energy of solvation -84.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds