Wall clock time and date at job start Tue Mar 31 2020 00:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21316 * 120.00172 * 2 1 4 4 C 1.46621 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.38627 * 126.51407 * 359.97329 * 4 2 1 6 6 N 1.34109 * 108.34556 * 180.02562 * 5 4 2 7 7 H 0.96997 * 125.34188 * 180.02562 * 6 5 4 8 8 C 1.37839 * 109.30426 * 0.02562 * 6 5 4 9 9 C 1.46846 * 125.79805 * 179.97438 * 8 6 5 10 10 O 1.21670 * 120.00165 * 180.02562 * 9 8 6 11 11 N 1.34774 * 119.99920 * 0.02562 * 9 8 6 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47289 * 179.97438 * 12 11 9 14 14 O 1.21285 * 119.99571 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99773 * 179.97438 * 13 12 11 16 16 C 1.37091 * 119.99763 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00286 * 0.02562 * 16 15 13 18 18 C 1.38956 * 120.00028 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47418 * 89.99825 * 20 18 16 22 22 H 1.48498 * 109.47091 * 209.99886 * 20 18 16 23 23 H 1.48498 * 109.46997 * 329.99696 * 20 18 16 24 24 C 1.36235 * 108.39697 * 0.23528 * 8 6 5 25 25 H 1.08997 * 109.46891 * 269.99923 * 1 2 3 26 26 H 1.09003 * 109.46764 * 29.99880 * 1 2 3 27 27 H 1.09005 * 109.46962 * 149.99463 * 1 2 3 28 28 H 1.08005 * 125.82577 * 0.04182 * 5 4 2 29 29 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 30 30 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 31 31 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 32 32 H 0.96998 * 120.00166 * 0.02562 * 15 13 12 33 33 H 0.96996 * 120.00054 * 180.02562 * 19 18 16 34 34 H 1.08002 * 126.50573 * 179.75355 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2401 -1.2698 -0.0006 5 6 1.6877 -2.5412 -0.0006 6 7 2.6869 -3.4356 -0.0006 7 1 2.5773 -4.3994 -0.0010 8 6 3.8941 -2.7702 0.0000 9 6 5.2213 -3.3987 0.0007 10 8 6.2220 -2.7067 0.0017 11 7 5.3308 -4.7419 0.0002 12 6 6.6549 -5.3690 0.0015 13 6 6.5009 -6.8681 0.0013 14 8 5.3940 -7.3639 -0.0002 15 7 7.5931 -7.6577 0.0019 16 6 7.4530 -9.0214 0.0022 17 1 6.4674 -9.4630 0.0017 18 6 8.5790 -9.8356 0.0033 19 7 9.7783 -9.2982 0.0045 20 14 8.3881 -11.6938 0.0031 21 1 8.3388 -12.1862 -1.3970 22 1 9.5430 -12.3101 0.7042 23 1 7.1307 -12.0622 0.7020 24 6 3.6466 -1.4306 0.0057 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 0.6326 -2.7720 -0.0009 29 1 4.5330 -5.2937 -0.0002 30 1 7.2042 -5.0596 -0.8877 31 1 7.2022 -5.0604 0.8923 32 1 8.4783 -7.2611 0.0027 33 1 10.5643 -9.8665 0.0049 34 1 4.3835 -0.6410 0.0113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117268006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:40 Heat of formation + Delta-G solvation = -72.429472 kcal Electronic energy + Delta-G solvation = -20166.014041 eV Core-core repulsion = 16678.570006 eV Total energy + Delta-G solvation = -3487.444036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73826 -39.41262 -38.76980 -38.07800 -34.63284 -33.84620 -31.98149 -31.47712 -30.81461 -29.33612 -27.47181 -24.72663 -23.18379 -22.46937 -20.38288 -19.86336 -19.19684 -18.58283 -18.07769 -16.39091 -15.72713 -15.67732 -15.55982 -15.35631 -15.11881 -14.82312 -14.53076 -14.38746 -14.05944 -13.60838 -13.55381 -13.41629 -12.55769 -12.44910 -12.34794 -12.32635 -12.04953 -11.71245 -11.19398 -10.52886 -10.40601 -10.16903 -9.90304 -9.72603 -9.37032 -9.06247 -8.75792 -8.56448 -8.19575 -6.59692 -4.02270 1.12213 1.43050 2.71940 2.94459 3.05214 3.10994 3.17432 3.22967 3.36558 3.63782 4.02619 4.08326 4.54836 4.73614 4.75993 4.80133 4.91796 5.08752 5.14855 5.23627 5.48113 5.73476 5.79508 5.84433 5.88714 5.94893 6.27322 6.41742 6.50721 6.93342 7.37823 7.51232 7.58905 7.82279 8.20232 8.35146 8.95420 9.29375 9.76359 10.56923 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.051160 B = 0.002741 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.175713 B =10212.176850 C =10738.904653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.423 3.577 3 O -0.471 6.471 4 C -0.274 4.274 5 C 0.088 3.912 6 N -0.520 5.520 7 H 0.426 0.574 8 C -0.054 4.054 9 C 0.584 3.416 10 O -0.531 6.531 11 N -0.707 5.707 12 C 0.109 3.891 13 C 0.426 3.574 14 O -0.602 6.602 15 N -0.545 5.545 16 C -0.307 4.307 17 H 0.106 0.894 18 C 0.027 3.973 19 N -0.892 5.892 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.051 4.051 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.185 0.815 29 H 0.404 0.596 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.275 0.725 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 11.017 0.065 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.302 3.698 3 O -0.348 6.348 4 C -0.282 4.282 5 C -0.055 4.055 6 N -0.115 5.115 7 H 0.265 0.735 8 C -0.164 4.164 9 C 0.370 3.630 10 O -0.408 6.408 11 N -0.360 5.360 12 C -0.018 4.018 13 C 0.212 3.788 14 O -0.489 6.489 15 N -0.179 5.179 16 C -0.437 4.437 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.532 5.532 20 Si 0.761 3.239 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.075 4.075 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.202 0.798 29 H 0.241 0.759 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.283 11.424 0.068 19.081 hybrid contribution 0.061 -1.645 -0.003 1.646 sum -15.222 9.780 0.065 18.093 Atomic orbital electron populations 1.22195 0.94099 1.04562 1.04465 1.21533 0.90873 0.86699 0.70667 1.90557 1.72183 1.34119 1.37891 1.20323 0.94281 0.93837 1.19723 1.22625 0.93971 0.88213 1.00734 1.41911 1.05716 1.09879 1.53999 0.73542 1.20188 0.85020 0.92536 1.18699 1.17027 0.86970 0.81845 0.77125 1.90851 1.36458 1.62764 1.50731 1.45567 1.10193 1.05815 1.74440 1.21007 0.84464 0.92677 1.03675 1.19678 0.85806 0.87397 0.85961 1.90471 1.25322 1.75246 1.57911 1.41794 1.07260 1.06783 1.62102 1.19724 0.95010 0.80393 1.48553 0.87646 1.25353 0.94531 1.01182 0.96597 1.69610 0.97816 1.36927 1.48819 0.85796 0.78116 0.81480 0.78541 1.20198 1.20716 1.19308 1.21224 0.95001 0.93893 0.97423 0.88717 0.89678 0.89939 0.79778 0.75853 0.89441 0.89453 0.76934 0.91453 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.42 4.32 7.24 -30.93 -0.22 4.10 16 3 O -0.47 -6.78 17.67 5.53 0.10 -6.68 16 4 C -0.27 -2.84 6.12 -105.11 -0.64 -3.48 16 5 C 0.09 0.62 11.28 -16.41 -0.19 0.44 16 6 N -0.52 -4.54 5.90 -9.24 -0.05 -4.60 16 7 H 0.43 2.81 8.13 -40.82 -0.33 2.48 16 8 C -0.05 -0.69 6.98 -82.40 -0.58 -1.26 16 9 C 0.58 9.22 7.79 -12.78 -0.10 9.12 16 10 O -0.53 -10.08 16.86 5.22 0.09 -9.99 16 11 N -0.71 -11.08 5.52 -62.74 -0.35 -11.43 16 12 C 0.11 1.92 6.15 -5.19 -0.03 1.89 16 13 C 0.43 9.34 7.85 -10.98 -0.09 9.25 16 14 O -0.60 -14.57 15.24 5.55 0.08 -14.49 16 15 N -0.55 -13.09 5.29 -10.96 -0.06 -13.15 16 16 C -0.31 -8.12 9.68 -14.93 -0.14 -8.26 16 17 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.32 13.05 55.50 0.72 -22.59 16 20 Si 0.93 20.01 29.55 -169.99 -5.02 14.98 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C -0.05 -0.66 10.37 -39.04 -0.40 -1.07 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.25 7.19 -51.93 -0.37 -0.13 16 28 H 0.19 0.44 7.49 -52.48 -0.39 0.05 16 29 H 0.40 5.88 6.51 -40.82 -0.27 5.61 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.40 9.18 7.90 -40.82 -0.32 8.86 16 33 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.16 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -33.97 312.69 -5.22 -39.18 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -3.31 Total: 13.45 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -2.13 Total: 10.60 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.27 Total: -51.76 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: 0.27 Total: -31.16 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.97 -5.22 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117268006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.247 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds