Wall clock time and date at job start Tue Mar 31 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34877 * 125.65046 * 2 1 4 4 C 1.35875 * 109.08040 * 180.25091 * 3 2 1 5 5 C 1.39385 * 107.92181 * 359.75032 * 4 3 2 6 6 C 1.37852 * 125.64147 * 179.82094 * 2 1 3 7 7 C 1.41523 * 126.31967 * 0.02562 * 6 2 1 8 8 O 1.21603 * 119.99989 * 359.71748 * 7 6 2 9 9 C 1.49099 * 119.99850 * 179.71230 * 7 6 2 10 10 O 1.21393 * 120.00296 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99823 * 179.72556 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27441 * 11 9 7 13 13 C 1.50701 * 109.47264 * 180.02562 * 12 11 9 14 14 O 1.21287 * 119.99900 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99977 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99935 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00182 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99926 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46971 * 90.00517 * 20 18 16 22 22 H 1.48505 * 109.46977 * 210.00053 * 20 18 16 23 23 H 1.48489 * 109.47457 * 330.00305 * 20 18 16 24 24 H 1.09006 * 109.47185 * 270.18219 * 1 2 3 25 25 H 1.08994 * 109.46943 * 30.17859 * 1 2 3 26 26 H 1.09001 * 109.47120 * 150.18210 * 1 2 3 27 27 H 1.07993 * 125.45957 * 0.02562 * 3 2 1 28 28 H 1.08004 * 126.03940 * 179.73114 * 4 3 2 29 29 H 1.07998 * 126.53688 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00317 * 0.28344 * 11 9 7 31 31 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 32 32 H 1.08997 * 109.46691 * 60.00285 * 12 11 9 33 33 H 0.97005 * 120.00166 * 0.02562 * 15 13 12 34 34 H 0.97003 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0960 0.0000 4 6 3.5535 0.7085 -0.0056 5 6 3.5864 -0.6850 -0.0035 6 6 2.2683 -1.1203 0.0035 7 6 1.8301 -2.4660 0.0072 8 8 0.6405 -2.7180 0.0127 9 6 2.8270 -3.5746 0.0043 10 8 4.0146 -3.3231 -0.0008 11 7 2.4097 -4.8561 0.0134 12 6 3.3892 -5.9455 0.0165 13 6 2.6686 -7.2690 0.0263 14 8 1.4561 -7.2993 0.0298 15 7 3.3714 -8.4190 0.0312 16 6 2.7158 -9.6230 0.0396 17 1 1.6362 -9.6500 0.0418 18 6 3.4405 -10.8087 0.0441 19 7 4.7542 -10.7758 0.0409 20 14 2.5472 -12.4491 0.0547 21 1 2.3074 -12.8912 -1.3425 22 1 3.3771 -13.4600 0.7582 23 1 1.2473 -12.3005 0.7569 24 1 -0.3634 0.0033 1.0277 25 1 -0.3633 0.8883 -0.5166 26 1 -0.3633 -0.8916 -0.5110 27 1 1.9015 2.1178 0.0004 28 1 4.4116 1.3644 -0.0111 29 1 4.4690 -1.3073 -0.0064 30 1 1.4608 -5.0572 0.0177 31 1 4.0112 -5.8774 -0.8759 32 1 4.0172 -5.8668 0.9039 33 1 4.3412 -8.3948 0.0288 34 1 5.2601 -11.6034 0.0436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117516042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:47 Heat of formation + Delta-G solvation = -47.230378 kcal Electronic energy + Delta-G solvation = -20583.415250 eV Core-core repulsion = 17097.063929 eV Total energy + Delta-G solvation = -3486.351321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77455 -39.94356 -38.50174 -37.91749 -34.58858 -33.76841 -33.14199 -31.40571 -30.18743 -28.20283 -26.76995 -25.36110 -24.15479 -21.51225 -20.61266 -19.81852 -19.26103 -18.18325 -17.60794 -17.16334 -16.11847 -15.92191 -15.46210 -15.33627 -14.82443 -14.65917 -14.34089 -14.18331 -13.85284 -13.56377 -13.49036 -13.29919 -12.55068 -12.43227 -12.29053 -12.24663 -11.98470 -11.64467 -11.27755 -11.13393 -10.46360 -10.32717 -9.65282 -9.45935 -8.98866 -8.94178 -8.66621 -8.47098 -8.12005 -6.53021 -3.94976 0.51195 2.07787 2.36213 2.69399 3.08860 3.11166 3.22124 3.28063 3.43299 3.71251 4.08678 4.40843 4.53627 4.70165 4.81239 4.89072 4.93658 5.15137 5.18932 5.24418 5.39887 5.78468 5.86972 5.97276 5.99930 6.02978 6.47362 6.50039 6.76090 6.94573 7.06103 7.45059 7.62693 7.89402 8.14748 8.43108 9.03069 9.36658 9.84624 10.63802 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.003004 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.236376 B = 9319.804034 C = 9877.581935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.410 5.410 3 C 0.037 3.963 4 C -0.226 4.226 5 C -0.076 4.076 6 C -0.103 4.103 7 C 0.417 3.583 8 O -0.450 6.450 9 C 0.491 3.509 10 O -0.517 6.517 11 N -0.677 5.677 12 C 0.105 3.895 13 C 0.426 3.574 14 O -0.594 6.594 15 N -0.547 5.547 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.171 0.829 28 H 0.146 0.854 29 H 0.170 0.830 30 H 0.421 0.579 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.396 0.604 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 21.250 -0.161 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.083 5.083 3 C -0.102 4.102 4 C -0.250 4.250 5 C -0.102 4.102 6 C -0.211 4.211 7 C 0.295 3.705 8 O -0.327 6.327 9 C 0.272 3.728 10 O -0.395 6.395 11 N -0.332 5.332 12 C -0.022 4.022 13 C 0.211 3.789 14 O -0.480 6.480 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.188 0.812 28 H 0.164 0.836 29 H 0.188 0.812 30 H 0.260 0.740 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.485 20.994 -0.154 21.282 hybrid contribution -0.161 -0.841 0.015 0.857 sum -3.646 20.153 -0.139 20.480 Atomic orbital electron populations 1.22347 0.76059 1.05385 1.04149 1.43900 1.06878 1.05250 1.52257 1.22175 0.91083 0.91649 1.05286 1.21064 0.95942 0.95602 1.12363 1.22350 0.95734 0.95035 0.97056 1.19289 0.91337 0.87721 1.22778 1.20072 0.88663 0.88156 0.73585 1.90627 1.18449 1.86840 1.36825 1.20168 0.89335 0.84110 0.79168 1.90670 1.16577 1.83604 1.48616 1.45617 1.12746 1.04179 1.70701 1.21106 0.91290 0.85962 1.03828 1.19678 0.88189 0.85054 0.85944 1.90525 1.13639 1.86684 1.57194 1.41779 1.09384 1.04513 1.62541 1.19743 0.93728 0.81725 1.48267 0.87628 1.25330 0.95552 1.00071 0.96722 1.69613 1.05223 1.29367 1.49235 0.85804 0.79153 0.80523 0.78513 1.20243 1.20776 1.19290 0.90317 0.89683 0.87914 0.81213 0.83644 0.81234 0.73966 0.89142 0.89138 0.76986 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.53 59.85 0.63 1.12 16 2 N -0.41 -4.39 3.15 -121.68 -0.38 -4.77 16 3 C 0.04 0.32 11.35 -17.06 -0.19 0.13 16 4 C -0.23 -2.22 10.81 -40.00 -0.43 -2.65 16 5 C -0.08 -0.95 9.95 -38.94 -0.39 -1.34 16 6 C -0.10 -1.38 6.72 -83.69 -0.56 -1.94 16 7 C 0.42 6.25 7.00 -33.82 -0.24 6.02 16 8 O -0.45 -7.10 14.64 5.27 0.08 -7.02 16 9 C 0.49 8.02 7.85 -11.75 -0.09 7.93 16 10 O -0.52 -8.87 14.04 5.46 0.08 -8.79 16 11 N -0.68 -11.83 5.52 -62.03 -0.34 -12.17 16 12 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16 13 C 0.43 9.77 7.85 -10.99 -0.09 9.69 16 14 O -0.59 -15.47 15.24 5.55 0.08 -15.39 16 15 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 16 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 17 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.03 0.68 5.50 -17.46 -0.10 0.59 16 19 N -0.89 -23.73 13.05 55.50 0.72 -23.00 16 20 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.10 0.99 6.27 -51.93 -0.33 0.67 16 27 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 28 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.17 2.23 6.07 -52.49 -0.32 1.91 16 30 H 0.42 7.71 6.90 -40.82 -0.28 7.43 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -31.70 306.48 -5.15 -36.85 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -3.30 Total: 14.72 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.63 Total: 12.99 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.06 Total: -53.48 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: 0.24 Total: -31.20 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.70 -5.15 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117516042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.380 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds