Wall clock time and date at job start Tue Mar 31 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34877 * 125.65046 * 2 1 4 4 C 1.35875 * 109.08040 * 180.25091 * 3 2 1 5 5 C 1.39385 * 107.92181 * 359.75032 * 4 3 2 6 6 C 1.37852 * 125.64147 * 179.82094 * 2 1 3 7 7 C 1.41523 * 126.31967 * 0.02562 * 6 2 1 8 8 O 1.21603 * 119.99989 * 359.71748 * 7 6 2 9 9 C 1.49099 * 119.99850 * 179.71230 * 7 6 2 10 10 O 1.21393 * 120.00296 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99823 * 179.72556 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27441 * 11 9 7 13 13 C 1.50701 * 109.47264 * 180.02562 * 12 11 9 14 14 O 1.21287 * 119.99900 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99977 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99935 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00182 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99926 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46971 * 90.00517 * 20 18 16 22 22 H 1.48505 * 109.46977 * 210.00053 * 20 18 16 23 23 H 1.48489 * 109.47457 * 330.00305 * 20 18 16 24 24 H 1.09006 * 109.47185 * 270.18219 * 1 2 3 25 25 H 1.08994 * 109.46943 * 30.17859 * 1 2 3 26 26 H 1.09001 * 109.47120 * 150.18210 * 1 2 3 27 27 H 1.07993 * 125.45957 * 0.02562 * 3 2 1 28 28 H 1.08004 * 126.03940 * 179.73114 * 4 3 2 29 29 H 1.07998 * 126.53688 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00317 * 0.28344 * 11 9 7 31 31 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 32 32 H 1.08997 * 109.46691 * 60.00285 * 12 11 9 33 33 H 0.97005 * 120.00166 * 0.02562 * 15 13 12 34 34 H 0.97003 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0960 0.0000 4 6 3.5535 0.7085 -0.0056 5 6 3.5864 -0.6850 -0.0035 6 6 2.2683 -1.1203 0.0035 7 6 1.8301 -2.4660 0.0072 8 8 0.6405 -2.7180 0.0127 9 6 2.8270 -3.5746 0.0043 10 8 4.0146 -3.3231 -0.0008 11 7 2.4097 -4.8561 0.0134 12 6 3.3892 -5.9455 0.0165 13 6 2.6686 -7.2690 0.0263 14 8 1.4561 -7.2993 0.0298 15 7 3.3714 -8.4190 0.0312 16 6 2.7158 -9.6230 0.0396 17 1 1.6362 -9.6500 0.0418 18 6 3.4405 -10.8087 0.0441 19 7 4.7542 -10.7758 0.0409 20 14 2.5472 -12.4491 0.0547 21 1 2.3074 -12.8912 -1.3425 22 1 3.3771 -13.4600 0.7582 23 1 1.2473 -12.3005 0.7569 24 1 -0.3634 0.0033 1.0277 25 1 -0.3633 0.8883 -0.5166 26 1 -0.3633 -0.8916 -0.5110 27 1 1.9015 2.1178 0.0004 28 1 4.4116 1.3644 -0.0111 29 1 4.4690 -1.3073 -0.0064 30 1 1.4608 -5.0572 0.0177 31 1 4.0112 -5.8774 -0.8759 32 1 4.0172 -5.8668 0.9039 33 1 4.3412 -8.3948 0.0288 34 1 5.2601 -11.6034 0.0436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117516042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:46 Heat of formation + Delta-G solvation = -70.637580 kcal Electronic energy + Delta-G solvation = -20584.430263 eV Core-core repulsion = 17097.063929 eV Total energy + Delta-G solvation = -3487.366333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.67680 -41.20432 -40.14116 -39.28092 -36.33147 -35.46182 -33.90044 -33.40243 -31.12995 -29.74498 -27.46546 -26.95527 -25.60315 -22.60706 -21.59385 -21.42666 -20.49885 -20.02038 -18.87415 -18.25304 -17.41347 -17.25926 -16.98609 -16.52537 -16.48349 -15.96094 -15.71848 -15.61832 -15.22431 -14.74335 -14.64998 -14.19567 -14.02901 -13.58236 -13.56416 -13.26989 -13.21557 -12.99335 -12.92262 -12.47429 -12.43190 -12.13153 -11.59316 -10.69813 -10.58631 -10.39626 -10.11275 -9.75394 -9.31479 -8.52720 -6.02922 -0.56713 1.06421 1.34175 1.35341 1.43132 1.55426 1.82836 1.88070 2.06175 2.28978 2.31609 3.01941 3.14309 3.17988 3.86173 3.94948 4.11576 4.16292 4.35179 4.36534 4.37554 4.42368 4.56845 4.70770 4.95917 5.21737 5.25574 5.37070 5.59533 5.83963 5.89465 5.98855 6.24830 6.32979 6.46289 6.78440 7.01962 7.41028 7.92428 8.64065 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.003004 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.236376 B = 9319.804034 C = 9877.581935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.413 5.413 3 C 0.066 3.934 4 C -0.235 4.235 5 C -0.086 4.086 6 C -0.141 4.141 7 C 0.417 3.583 8 O -0.471 6.471 9 C 0.492 3.508 10 O -0.526 6.526 11 N -0.684 5.684 12 C 0.118 3.882 13 C 0.429 3.571 14 O -0.627 6.627 15 N -0.555 5.555 16 C -0.339 4.339 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 0.996 3.004 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.086 0.914 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.219 0.781 28 H 0.171 0.829 29 H 0.156 0.844 30 H 0.416 0.584 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.401 0.599 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 23.339 -0.184 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.086 5.086 3 C -0.074 4.074 4 C -0.257 4.257 5 C -0.113 4.113 6 C -0.249 4.249 7 C 0.298 3.702 8 O -0.350 6.350 9 C 0.275 3.725 10 O -0.403 6.403 11 N -0.339 5.339 12 C -0.009 4.009 13 C 0.216 3.784 14 O -0.515 6.515 15 N -0.191 5.191 16 C -0.468 4.468 17 H 0.102 0.898 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.196 1.196 24 H 0.104 0.896 25 H 0.142 0.858 26 H 0.099 0.901 27 H 0.236 0.764 28 H 0.189 0.811 29 H 0.174 0.826 30 H 0.255 0.745 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.235 0.765 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.369 23.095 -0.179 23.340 hybrid contribution -0.146 -1.303 0.021 1.312 sum -3.514 21.792 -0.158 22.074 Atomic orbital electron populations 1.22520 0.74639 1.06200 1.04913 1.44167 1.07893 1.04904 1.51594 1.23006 0.90368 0.92912 1.01108 1.21430 0.97671 0.94468 1.12180 1.22405 0.95064 0.96642 0.97148 1.19135 0.92300 0.87740 1.25721 1.19925 0.88023 0.88551 0.73656 1.90619 1.18684 1.86981 1.38748 1.20536 0.89677 0.83995 0.78327 1.90659 1.17064 1.83740 1.48866 1.45655 1.12268 1.04530 1.71465 1.20985 0.90986 0.83452 1.05454 1.20413 0.87908 0.86210 0.83878 1.90501 1.15383 1.87509 1.58108 1.41807 1.09573 1.04521 1.63191 1.19729 0.93160 0.83368 1.50572 0.89759 1.26112 0.96314 1.02837 0.95668 1.69670 1.06107 1.30542 1.49042 0.84878 0.77933 0.76499 0.78744 1.19520 1.19469 1.19608 0.89587 0.85849 0.90107 0.76403 0.81146 0.82630 0.74522 0.87409 0.87410 0.76468 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.53 127.77 1.35 2.14 16 2 N -0.41 -7.90 3.15 -538.89 -1.70 -9.60 16 3 C 0.07 0.87 11.35 83.68 0.95 1.82 16 4 C -0.23 -3.93 10.81 22.00 0.24 -3.69 16 5 C -0.09 -2.08 9.95 22.68 0.23 -1.85 16 6 C -0.14 -3.71 6.72 39.14 0.26 -3.45 16 7 C 0.42 12.80 7.00 26.00 0.18 12.98 16 8 O -0.47 -15.33 14.64 -4.04 -0.06 -15.39 16 9 C 0.49 16.39 7.85 87.16 0.68 17.07 16 10 O -0.53 -18.16 14.04 -3.38 -0.05 -18.21 16 11 N -0.68 -24.39 5.52 -468.50 -2.59 -26.97 16 12 C 0.12 4.29 6.15 85.63 0.53 4.82 16 13 C 0.43 20.11 7.85 87.66 0.69 20.79 16 14 O -0.63 -33.66 15.24 -3.05 -0.05 -33.71 16 15 N -0.56 -27.93 5.29 -306.99 -1.62 -29.55 16 16 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 17 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 18 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 19 N -0.91 -48.32 13.05 21.67 0.28 -48.03 16 20 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.08 1.52 6.27 -2.39 -0.01 1.51 16 27 H 0.22 0.69 8.06 -2.91 -0.02 0.66 16 28 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.16 4.13 6.07 -2.91 -0.02 4.11 16 30 H 0.42 15.83 6.90 -92.71 -0.64 15.19 16 31 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.40 19.09 7.90 -92.70 -0.73 18.35 16 34 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -69.80 306.48 2.43 -67.37 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.20 Total: 37.45 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: 6.38 Total: 32.67 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -5.62 Total: -114.16 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: -0.15 Total: -67.30 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -69.80 2.43 -67.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117516042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.271 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds