Wall clock time and date at job start Tue Mar 31 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36953 * 119.70105 * 2 1 4 4 C 1.47889 * 119.75625 * 359.97438 * 3 2 1 5 5 O 1.21543 * 119.99893 * 354.07564 * 4 3 2 6 6 N 1.34768 * 119.99954 * 173.79938 * 4 3 2 7 7 C 1.46499 * 120.00278 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47475 * 180.02562 * 7 6 4 9 9 O 1.21289 * 119.99892 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99898 * 180.02562 * 8 7 6 11 11 C 1.37090 * 119.99798 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00300 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99957 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99999 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47165 * 89.99865 * 15 13 11 17 17 H 1.48494 * 109.47539 * 210.00293 * 15 13 11 18 18 H 1.48505 * 109.47080 * 330.00262 * 15 13 11 19 19 C 1.36290 * 120.48865 * 179.70223 * 3 2 1 20 20 C 1.40413 * 119.90660 * 0.27862 * 19 3 2 21 21 C 1.36108 * 119.41407 * 0.02562 * 20 19 3 22 22 C 1.34666 * 119.70609 * 180.26527 * 2 1 3 23 23 O 1.21961 * 119.95818 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47626 * 64.74667 * 1 2 3 25 25 H 1.09000 * 109.47408 * 184.74918 * 1 2 3 26 26 H 1.08998 * 109.47666 * 304.74732 * 1 2 3 27 27 H 0.96999 * 120.00545 * 359.97438 * 6 4 3 28 28 H 1.08997 * 109.47405 * 300.00962 * 7 6 4 29 29 H 1.09003 * 109.46599 * 59.99998 * 7 6 4 30 30 H 0.96997 * 119.99912 * 359.97438 * 10 8 7 31 31 H 0.96998 * 120.00040 * 179.97438 * 14 13 11 32 32 H 1.07999 * 120.05126 * 180.29707 * 19 3 2 33 33 H 1.07998 * 120.29174 * 180.02562 * 20 19 3 34 34 H 1.07999 * 120.24499 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1435 1.1896 0.0000 4 6 1.3919 2.4633 -0.0006 5 8 0.1815 2.4546 -0.1097 6 7 2.0488 3.6333 0.1255 7 6 1.3044 4.8951 0.1244 8 6 2.2657 6.0456 0.2774 9 8 3.4555 5.8326 0.3771 10 7 1.8031 7.3113 0.3035 11 6 2.6776 8.3579 0.4422 12 1 3.7371 8.1682 0.5310 13 6 2.2008 9.6628 0.4686 14 7 0.9115 9.8936 0.3611 15 14 3.3922 11.0889 0.6583 16 1 3.8388 11.5427 -0.6832 17 1 2.7157 12.2092 1.3601 18 1 4.5696 10.6485 1.4491 19 6 3.5063 1.2083 0.0061 20 6 4.2230 0.0009 0.0065 21 6 3.5447 -1.1791 0.0003 22 6 2.1323 -1.1697 -0.0054 23 8 1.5163 -2.2223 -0.0098 24 1 -0.3634 0.4384 -0.9295 25 1 -0.3634 -1.0241 0.0851 26 1 -0.3634 0.5857 0.8444 27 1 3.0144 3.6401 0.2170 28 1 0.7632 4.9969 -0.8163 29 1 0.5964 4.8999 0.9531 30 1 0.8516 7.4816 0.2234 31 1 0.5787 10.8044 0.3799 32 1 4.0342 2.1505 0.0109 33 1 5.3030 0.0085 0.0118 34 1 4.0825 -2.1157 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128705115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:03 Heat of formation + Delta-G solvation = -64.879382 kcal Electronic energy + Delta-G solvation = -20809.658124 eV Core-core repulsion = 17322.541485 eV Total energy + Delta-G solvation = -3487.116639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71271 -39.68672 -38.31042 -36.88127 -35.26959 -34.37804 -33.83777 -31.53938 -30.76809 -27.85047 -27.64999 -25.19536 -24.26174 -22.76762 -21.02956 -19.84898 -18.53993 -17.96634 -17.55231 -17.16522 -16.46679 -16.07807 -15.55314 -15.42798 -15.34019 -14.82537 -14.61331 -14.17642 -14.07637 -13.59234 -13.19410 -12.89788 -12.65632 -12.45228 -12.24197 -12.19667 -11.87540 -11.72149 -11.20310 -10.53534 -10.43028 -10.38731 -10.33198 -9.93454 -9.74096 -9.16806 -8.78887 -8.25426 -8.21434 -6.61575 -4.04067 0.19544 1.42719 2.23000 2.67049 2.97858 3.04523 3.16808 3.21774 3.45001 3.60474 4.01051 4.26631 4.36874 4.59667 4.68319 4.91863 4.98621 5.06571 5.33669 5.36492 5.58661 5.65087 5.71326 5.74358 5.76339 5.88382 5.92820 6.12653 6.29503 6.77343 7.35551 7.36784 7.76488 7.79727 7.95087 8.32440 8.93813 9.26720 9.73514 10.54953 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042900 B = 0.003190 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.528716 B = 8774.311201 C = 9401.378649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.476 5.476 3 C 0.123 3.877 4 C 0.551 3.449 5 O -0.529 6.529 6 N -0.685 5.685 7 C 0.108 3.892 8 C 0.424 3.576 9 O -0.598 6.598 10 N -0.544 5.544 11 C -0.307 4.307 12 H 0.107 0.893 13 C 0.027 3.973 14 N -0.892 5.892 15 Si 0.934 3.066 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.181 4.181 20 C -0.024 4.024 21 C -0.221 4.221 22 C 0.512 3.488 23 O -0.552 6.552 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.415 0.585 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.396 0.604 31 H 0.275 0.725 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -13.897 -0.729 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.188 5.188 3 C 0.012 3.988 4 C 0.335 3.665 5 O -0.407 6.407 6 N -0.340 5.340 7 C -0.019 4.019 8 C 0.210 3.790 9 O -0.485 6.485 10 N -0.179 5.179 11 C -0.437 4.437 12 H 0.125 0.875 13 C -0.176 4.176 14 N -0.532 5.532 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.206 4.206 20 C -0.045 4.045 21 C -0.243 4.243 22 C 0.314 3.686 23 O -0.435 6.435 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.255 0.745 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.814 -14.466 -0.730 14.598 hybrid contribution 0.439 1.049 0.052 1.138 sum 2.252 -13.417 -0.677 13.622 Atomic orbital electron populations 1.22329 0.75919 1.04382 1.05090 1.45402 1.10037 1.05090 1.58230 1.20123 0.92426 0.86713 0.99546 1.17755 0.87034 0.83174 0.78501 1.90828 1.13108 1.87067 1.49732 1.45531 1.12590 1.04436 1.71434 1.21080 0.94482 0.82521 1.03789 1.19614 0.88971 0.84134 0.86295 1.90503 1.16355 1.84072 1.57530 1.41781 1.10503 1.04097 1.61484 1.19740 0.92089 0.84059 1.47771 0.87540 1.25347 0.96649 0.99019 0.96580 1.69608 1.12451 1.22516 1.48639 0.85799 0.79768 0.79772 0.78634 1.20191 1.20745 1.19234 1.21063 0.91212 1.00595 1.07766 1.21441 1.01200 0.91311 0.90591 1.22390 0.92611 1.00326 1.09005 1.17328 0.89327 0.82506 0.79450 1.90929 1.69944 1.29083 1.53529 0.89522 0.88995 0.89316 0.74468 0.89189 0.89196 0.76975 0.91453 0.82760 0.83756 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 8.93 59.84 0.53 1.31 16 2 N -0.48 -6.15 3.02 -122.80 -0.37 -6.52 16 3 C 0.12 1.48 6.63 -82.33 -0.55 0.94 16 4 C 0.55 7.58 7.69 -12.31 -0.09 7.48 16 5 O -0.53 -8.25 13.22 5.33 0.07 -8.18 16 6 N -0.69 -9.72 5.47 -62.42 -0.34 -10.06 16 7 C 0.11 1.73 6.15 -5.19 -0.03 1.70 16 8 C 0.42 8.84 7.85 -10.98 -0.09 8.76 16 9 O -0.60 -13.97 15.24 5.55 0.08 -13.89 16 10 N -0.54 -12.57 5.29 -10.96 -0.06 -12.62 16 11 C -0.31 -7.91 9.68 -14.94 -0.14 -8.05 16 12 H 0.11 2.85 7.16 -52.49 -0.38 2.48 16 13 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 14 N -0.89 -22.81 13.05 55.50 0.72 -22.09 16 15 Si 0.93 19.65 29.55 -169.99 -5.02 14.63 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 C -0.18 -1.75 9.49 -39.46 -0.37 -2.13 16 20 C -0.02 -0.20 10.08 -39.53 -0.40 -0.60 16 21 C -0.22 -2.26 10.00 -39.20 -0.39 -2.65 16 22 C 0.51 6.97 7.43 -15.16 -0.11 6.86 16 23 O -0.55 -9.18 16.40 4.95 0.08 -9.10 16 24 H 0.09 1.05 7.37 -51.93 -0.38 0.67 16 25 H 0.09 1.10 6.88 -51.93 -0.36 0.75 16 26 H 0.09 1.07 7.08 -51.93 -0.37 0.71 16 27 H 0.41 5.64 5.45 -40.82 -0.22 5.42 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.40 8.78 7.90 -40.82 -0.32 8.46 16 31 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.15 1.27 6.34 -52.49 -0.33 0.94 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -31.12 300.86 -5.23 -36.35 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -3.19 Total: 12.73 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -1.74 Total: 14.21 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.05 Total: -51.29 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: 0.24 Total: -31.17 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.12 -5.23 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.529 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds