Wall clock time and date at job start Tue Mar 31 2020 00:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36953 * 119.70105 * 2 1 4 4 C 1.47889 * 119.75625 * 359.97438 * 3 2 1 5 5 O 1.21543 * 119.99893 * 354.07564 * 4 3 2 6 6 N 1.34768 * 119.99954 * 173.79938 * 4 3 2 7 7 C 1.46499 * 120.00278 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47475 * 180.02562 * 7 6 4 9 9 O 1.21289 * 119.99892 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99898 * 180.02562 * 8 7 6 11 11 C 1.37090 * 119.99798 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00300 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99957 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99999 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47165 * 89.99865 * 15 13 11 17 17 H 1.48494 * 109.47539 * 210.00293 * 15 13 11 18 18 H 1.48505 * 109.47080 * 330.00262 * 15 13 11 19 19 C 1.36290 * 120.48865 * 179.70223 * 3 2 1 20 20 C 1.40413 * 119.90660 * 0.27862 * 19 3 2 21 21 C 1.36108 * 119.41407 * 0.02562 * 20 19 3 22 22 C 1.34666 * 119.70609 * 180.26527 * 2 1 3 23 23 O 1.21961 * 119.95818 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47626 * 64.74667 * 1 2 3 25 25 H 1.09000 * 109.47408 * 184.74918 * 1 2 3 26 26 H 1.08998 * 109.47666 * 304.74732 * 1 2 3 27 27 H 0.96999 * 120.00545 * 359.97438 * 6 4 3 28 28 H 1.08997 * 109.47405 * 300.00962 * 7 6 4 29 29 H 1.09003 * 109.46599 * 59.99998 * 7 6 4 30 30 H 0.96997 * 119.99912 * 359.97438 * 10 8 7 31 31 H 0.96998 * 120.00040 * 179.97438 * 14 13 11 32 32 H 1.07999 * 120.05126 * 180.29707 * 19 3 2 33 33 H 1.07998 * 120.29174 * 180.02562 * 20 19 3 34 34 H 1.07999 * 120.24499 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1435 1.1896 0.0000 4 6 1.3919 2.4633 -0.0006 5 8 0.1815 2.4546 -0.1097 6 7 2.0488 3.6333 0.1255 7 6 1.3044 4.8951 0.1244 8 6 2.2657 6.0456 0.2774 9 8 3.4555 5.8326 0.3771 10 7 1.8031 7.3113 0.3035 11 6 2.6776 8.3579 0.4422 12 1 3.7371 8.1682 0.5310 13 6 2.2008 9.6628 0.4686 14 7 0.9115 9.8936 0.3611 15 14 3.3922 11.0889 0.6583 16 1 3.8388 11.5427 -0.6832 17 1 2.7157 12.2092 1.3601 18 1 4.5696 10.6485 1.4491 19 6 3.5063 1.2083 0.0061 20 6 4.2230 0.0009 0.0065 21 6 3.5447 -1.1791 0.0003 22 6 2.1323 -1.1697 -0.0054 23 8 1.5163 -2.2223 -0.0098 24 1 -0.3634 0.4384 -0.9295 25 1 -0.3634 -1.0241 0.0851 26 1 -0.3634 0.5857 0.8444 27 1 3.0144 3.6401 0.2170 28 1 0.7632 4.9969 -0.8163 29 1 0.5964 4.8999 0.9531 30 1 0.8516 7.4816 0.2234 31 1 0.5787 10.8044 0.3799 32 1 4.0342 2.1505 0.0109 33 1 5.3030 0.0085 0.0118 34 1 4.0825 -2.1157 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128705115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:02 Heat of formation + Delta-G solvation = -88.182896 kcal Electronic energy + Delta-G solvation = -20810.668640 eV Core-core repulsion = 17322.541485 eV Total energy + Delta-G solvation = -3488.127155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.67932 -40.91668 -39.90305 -37.90654 -36.49417 -35.87465 -35.06763 -33.37119 -31.81537 -29.13596 -28.66281 -26.66999 -25.51764 -23.67318 -22.15209 -21.41731 -20.14234 -19.38802 -18.53075 -18.10398 -17.49911 -17.41604 -16.83206 -16.80216 -16.60573 -16.26574 -15.69041 -15.58682 -15.48424 -15.00634 -14.27921 -14.02923 -13.79882 -13.59608 -13.51891 -13.48766 -13.15660 -12.90428 -12.83881 -12.43160 -12.11525 -11.54737 -11.48754 -11.16603 -10.99807 -10.55045 -10.36201 -10.07445 -9.19382 -8.49649 -5.99281 -0.68271 0.55975 1.23122 1.38124 1.45881 1.57455 1.62026 1.91206 1.92692 2.30771 2.55316 3.07464 3.18394 3.25254 3.53252 3.83710 4.09389 4.20228 4.21114 4.37823 4.42068 4.42161 4.43293 4.72068 4.83563 4.94733 5.04983 5.15362 5.35682 5.40740 5.82805 5.93351 6.25492 6.49341 6.77120 6.85664 7.05615 7.46100 7.95523 8.66991 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042900 B = 0.003190 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.528716 B = 8774.311201 C = 9401.378649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.481 5.481 3 C 0.096 3.904 4 C 0.557 3.443 5 O -0.551 6.551 6 N -0.684 5.684 7 C 0.121 3.879 8 C 0.433 3.567 9 O -0.621 6.621 10 N -0.559 5.559 11 C -0.335 4.335 12 H 0.089 0.911 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.994 3.006 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.268 1.268 19 C -0.156 4.156 20 C -0.006 4.006 21 C -0.224 4.224 22 C 0.497 3.503 23 O -0.597 6.597 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.419 0.581 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.399 0.601 31 H 0.279 0.721 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -13.917 -0.745 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.192 5.192 3 C -0.014 4.014 4 C 0.343 3.657 5 O -0.430 6.430 6 N -0.339 5.339 7 C -0.006 4.006 8 C 0.220 3.780 9 O -0.509 6.509 10 N -0.194 5.194 11 C -0.464 4.464 12 H 0.107 0.893 13 C -0.211 4.211 14 N -0.556 5.556 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.200 1.200 18 H -0.193 1.193 19 C -0.180 4.180 20 C -0.027 4.027 21 C -0.245 4.245 22 C 0.301 3.699 23 O -0.483 6.483 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.260 0.740 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.233 0.767 31 H 0.089 0.911 32 H 0.191 0.809 33 H 0.207 0.793 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.543 -14.476 -0.748 14.923 hybrid contribution -0.029 0.986 0.052 0.987 sum 3.515 -13.491 -0.696 13.959 Atomic orbital electron populations 1.22236 0.76250 1.03998 1.04825 1.45410 1.10119 1.05380 1.58328 1.20000 0.93136 0.85521 1.02701 1.17913 0.86791 0.83441 0.77560 1.90821 1.14150 1.87376 1.50683 1.45431 1.12641 1.03930 1.71908 1.20896 0.93349 0.81307 1.05036 1.20346 0.89325 0.84553 0.83780 1.90482 1.17892 1.84667 1.57834 1.41831 1.10362 1.04523 1.62700 1.19740 0.91821 0.85450 1.49421 0.89310 1.26087 0.98169 1.00837 0.95965 1.69673 1.13588 1.23162 1.49214 0.84902 0.77784 0.76910 0.78647 1.19674 1.20001 1.19285 1.21482 0.90247 1.02182 1.04130 1.21861 1.03184 0.89561 0.88073 1.22588 0.90868 1.02180 1.08897 1.17926 0.90662 0.81989 0.79336 1.90899 1.70936 1.30393 1.56101 0.89774 0.89391 0.89531 0.73988 0.87847 0.87904 0.76665 0.91149 0.80873 0.79275 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.69 8.93 127.77 1.14 2.83 16 2 N -0.48 -12.16 3.02 -660.61 -1.99 -14.15 16 3 C 0.10 2.16 6.63 40.45 0.27 2.43 16 4 C 0.56 14.57 7.69 86.80 0.67 15.24 16 5 O -0.55 -16.78 13.22 -3.85 -0.05 -16.84 16 6 N -0.68 -18.16 5.47 -469.68 -2.57 -20.73 16 7 C 0.12 3.70 6.15 85.63 0.53 4.23 16 8 C 0.43 17.72 7.85 87.66 0.69 18.41 16 9 O -0.62 -28.51 15.24 -3.06 -0.05 -28.56 16 10 N -0.56 -25.79 5.29 -306.99 -1.62 -27.41 16 11 C -0.33 -17.33 9.68 84.04 0.81 -16.52 16 12 H 0.09 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 14 N -0.92 -46.66 13.05 21.66 0.28 -46.37 16 15 Si 0.99 39.86 29.55 68.60 2.03 41.88 16 16 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 17 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 C -0.16 -2.49 9.49 22.35 0.21 -2.28 16 20 C -0.01 -0.07 10.08 22.30 0.22 0.15 16 21 C -0.22 -3.98 10.00 22.51 0.23 -3.76 16 22 C 0.50 13.19 7.43 85.00 0.63 13.82 16 23 O -0.60 -20.15 16.40 -5.19 -0.09 -20.23 16 24 H 0.08 2.09 7.37 -2.38 -0.02 2.07 16 25 H 0.09 2.22 6.88 -2.39 -0.02 2.20 16 26 H 0.09 2.14 7.08 -2.39 -0.02 2.13 16 27 H 0.42 10.45 5.45 -92.71 -0.50 9.95 16 28 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.40 17.72 7.90 -92.71 -0.73 16.99 16 31 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.17 2.15 6.34 -2.91 -0.02 2.13 16 33 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -67.64 300.86 1.75 -65.89 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.06 Total: 31.98 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 5.87 Total: 34.54 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -5.90 Total: -108.67 kcal Atomic # 8 Polarization: -65.45 SS G_CDS: -0.18 Total: -65.63 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Total: -67.64 1.75 -65.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.289 kcal (2) G-P(sol) polarization free energy of solvation -67.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds