Wall clock time and date at job start Tue Mar 31 2020 00:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47341 * 2 1 4 4 C 1.34694 * 117.00089 * 179.97438 * 3 2 1 5 5 O 1.21437 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.47997 * 119.99694 * 179.97438 * 4 3 2 7 7 N 1.33238 * 120.61998 * 355.05658 * 6 4 3 8 8 C 1.31409 * 120.81545 * 180.02562 * 7 6 4 9 9 N 1.32014 * 122.14906 * 359.97438 * 8 7 6 10 10 C 1.31970 * 121.15337 * 0.02562 * 9 8 7 11 11 C 1.39723 * 119.03892 * 0.02562 * 10 9 8 12 12 N 1.39252 * 120.96362 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99960 * 34.57899 * 12 11 10 14 14 O 1.21277 * 120.00044 * 5.42221 * 13 12 11 15 15 C 1.50693 * 120.00162 * 185.40916 * 13 12 11 16 16 C 1.50695 * 109.47618 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99930 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00638 * 180.02562 * 16 15 13 19 19 N 1.31521 * 119.99846 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00241 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47399 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47191 * 119.99993 * 20 18 16 23 23 H 1.48498 * 109.47228 * 239.99775 * 20 18 16 24 24 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46587 * 299.99710 * 1 2 3 26 26 H 1.08997 * 109.47508 * 59.99850 * 1 2 3 27 27 H 1.08999 * 109.47409 * 239.99944 * 2 1 3 28 28 H 1.08997 * 109.47508 * 120.00150 * 2 1 3 29 29 H 1.08004 * 118.92125 * 179.97438 * 8 7 6 30 30 H 1.07995 * 120.47953 * 179.72728 * 10 9 8 31 31 H 0.96996 * 119.99888 * 214.59347 * 12 11 10 32 32 H 1.09000 * 109.47682 * 300.00587 * 15 13 12 33 33 H 1.09005 * 109.46861 * 60.00889 * 15 13 12 34 34 H 0.97000 * 119.99622 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5454 0.0005 5 8 4.0891 0.5823 0.0005 6 6 3.9150 2.9130 0.0000 7 7 3.1188 3.9766 -0.0998 8 6 3.6169 5.1926 -0.1012 9 7 4.9136 5.4207 -0.0046 10 6 5.7758 4.4269 0.0981 11 6 5.2993 3.1134 0.1035 12 7 6.1733 2.0346 0.2106 13 6 7.2868 2.1415 0.9623 14 8 7.4785 3.1400 1.6235 15 6 8.2935 1.0203 0.9816 16 6 9.4362 1.3867 1.8931 17 1 9.4336 2.3364 2.4075 18 6 10.4851 0.5096 2.0705 19 7 10.4881 -0.6471 1.4446 20 14 11.9012 0.9635 3.2010 21 1 11.6597 2.3090 3.7813 22 1 12.0022 -0.0366 4.2940 23 1 13.1678 0.9793 2.4259 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.9434 6.0329 -0.1840 30 1 6.8347 4.6258 0.1721 31 1 5.9808 1.2064 -0.2561 32 1 7.8167 0.1100 1.3451 33 1 8.6718 0.8544 -0.0271 34 1 11.2263 -1.2640 1.5692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:29 Heat of formation + Delta-G solvation = -70.069482 kcal Electronic energy + Delta-G solvation = -21105.010668 eV Core-core repulsion = 17617.668969 eV Total energy + Delta-G solvation = -3487.341699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62069 -40.19081 -39.10861 -36.94073 -34.84398 -34.02728 -33.08635 -31.91048 -30.82041 -28.83689 -26.25029 -24.86968 -23.54592 -23.00759 -21.79518 -20.23180 -18.79471 -17.97447 -17.46655 -16.97946 -16.85460 -16.27414 -15.79337 -15.41737 -14.96002 -14.51426 -14.36868 -14.08061 -13.75362 -13.66969 -13.13086 -13.02629 -12.25783 -12.22763 -11.87561 -11.69755 -11.59710 -11.07326 -10.96269 -10.91474 -10.83871 -10.75031 -10.69314 -10.08178 -9.54498 -9.40185 -9.06819 -8.54878 -8.39261 -6.15863 -4.17299 0.21363 0.84152 2.20957 2.27468 3.19098 3.25438 3.28379 3.36142 3.45124 3.73273 3.77847 4.10547 4.31653 4.40848 4.60065 4.69668 4.72676 4.93186 5.03493 5.22707 5.36805 5.52772 5.61700 5.69646 5.90424 6.01425 6.20509 6.46677 6.74853 7.00257 7.13974 7.42692 7.62254 7.86219 7.89084 8.12955 8.69004 8.93187 9.48391 10.96179 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.004426 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.284312 B = 6324.959066 C = 7543.338682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.531 3.469 5 O -0.491 6.491 6 C 0.081 3.919 7 N -0.452 5.452 8 C 0.252 3.748 9 N -0.476 5.476 10 C 0.150 3.850 11 C 0.141 3.859 12 N -0.667 5.667 13 C 0.516 3.484 14 O -0.517 6.517 15 C 0.008 3.992 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.204 0.796 30 H 0.190 0.810 31 H 0.425 0.575 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 3.553 -5.957 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.246 6.246 4 C 0.374 3.626 5 O -0.377 6.377 6 C -0.066 4.066 7 N -0.168 5.168 8 C -0.037 4.037 9 N -0.189 5.189 10 C -0.024 4.024 11 C 0.035 3.965 12 N -0.317 5.317 13 C 0.308 3.692 14 O -0.391 6.391 15 C -0.031 4.031 16 C -0.553 4.553 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.220 0.780 30 H 0.207 0.793 31 H 0.268 0.732 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.958 4.393 -5.556 19.305 hybrid contribution 1.141 -1.157 0.415 1.677 sum -16.817 3.236 -5.141 17.881 Atomic orbital electron populations 1.21795 0.92323 1.02986 1.03706 1.23167 0.95625 0.79721 1.03066 1.86655 1.22394 1.32366 1.83231 1.20478 0.81352 0.87754 0.73005 1.90782 1.60225 1.41180 1.45523 1.20142 0.88446 0.91781 1.06265 1.68278 1.39208 0.99203 1.10127 1.24830 0.90132 0.93146 0.95596 1.68327 1.04382 1.36174 1.10054 1.23686 1.01553 0.85485 0.91698 1.19682 0.89555 0.92077 0.95201 1.44556 1.22365 1.15116 1.49705 1.22668 0.80142 0.90790 0.75563 1.90575 1.75251 1.32657 1.40585 1.19320 0.91872 0.91280 1.00588 1.21146 1.03107 1.04333 1.26725 0.90418 1.25006 0.98530 0.94779 0.96119 1.69968 1.32395 1.08497 1.42739 0.86338 0.81518 0.78762 0.80311 1.19405 1.20928 1.20897 0.90091 0.91360 0.91361 0.90816 0.90777 0.77965 0.79307 0.73204 0.92568 0.92491 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.67 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.33 -4.31 10.08 -40.48 -0.41 -4.72 16 4 C 0.53 7.92 7.95 34.73 0.28 8.19 16 5 O -0.49 -7.89 13.84 -19.22 -0.27 -8.15 16 6 C 0.08 1.24 6.81 -82.50 -0.56 0.68 16 7 N -0.45 -6.36 10.25 -11.07 -0.11 -6.48 16 8 C 0.25 3.14 12.26 -92.29 -1.13 2.01 16 9 N -0.48 -6.87 10.41 -14.41 -0.15 -7.02 16 10 C 0.15 2.40 9.93 -16.94 -0.17 2.23 16 11 C 0.14 2.32 6.30 -83.18 -0.52 1.80 16 12 N -0.67 -11.84 4.75 -9.49 -0.05 -11.88 16 13 C 0.52 11.10 7.58 -10.99 -0.08 11.02 16 14 O -0.52 -12.23 13.31 5.56 0.07 -12.16 16 15 C 0.01 0.21 5.46 -29.04 -0.16 0.05 16 16 C -0.51 -14.29 8.92 -34.44 -0.31 -14.60 16 17 H 0.08 2.23 6.75 -52.48 -0.35 1.88 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 20 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.20 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.19 3.13 6.65 -52.49 -0.35 2.79 16 31 H 0.43 7.06 6.44 -40.82 -0.26 6.80 16 32 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -31.42 307.12 -6.19 -37.61 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.48 Total: 3.54 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -2.14 Total: 13.00 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.43 Total: -50.23 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.60 Total: -25.03 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.42 -6.19 -37.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.454 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds