Wall clock time and date at job start Tue Mar 31 2020 00:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47341 * 2 1 4 4 C 1.34694 * 117.00089 * 179.97438 * 3 2 1 5 5 O 1.21437 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.47997 * 119.99694 * 179.97438 * 4 3 2 7 7 N 1.33238 * 120.61998 * 355.05658 * 6 4 3 8 8 C 1.31409 * 120.81545 * 180.02562 * 7 6 4 9 9 N 1.32014 * 122.14906 * 359.97438 * 8 7 6 10 10 C 1.31970 * 121.15337 * 0.02562 * 9 8 7 11 11 C 1.39723 * 119.03892 * 0.02562 * 10 9 8 12 12 N 1.39252 * 120.96362 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99960 * 34.57899 * 12 11 10 14 14 O 1.21277 * 120.00044 * 5.42221 * 13 12 11 15 15 C 1.50693 * 120.00162 * 185.40916 * 13 12 11 16 16 C 1.50695 * 109.47618 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99930 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00638 * 180.02562 * 16 15 13 19 19 N 1.31521 * 119.99846 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00241 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47399 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47191 * 119.99993 * 20 18 16 23 23 H 1.48498 * 109.47228 * 239.99775 * 20 18 16 24 24 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46587 * 299.99710 * 1 2 3 26 26 H 1.08997 * 109.47508 * 59.99850 * 1 2 3 27 27 H 1.08999 * 109.47409 * 239.99944 * 2 1 3 28 28 H 1.08997 * 109.47508 * 120.00150 * 2 1 3 29 29 H 1.08004 * 118.92125 * 179.97438 * 8 7 6 30 30 H 1.07995 * 120.47953 * 179.72728 * 10 9 8 31 31 H 0.96996 * 119.99888 * 214.59347 * 12 11 10 32 32 H 1.09000 * 109.47682 * 300.00587 * 15 13 12 33 33 H 1.09005 * 109.46861 * 60.00889 * 15 13 12 34 34 H 0.97000 * 119.99622 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5454 0.0005 5 8 4.0891 0.5823 0.0005 6 6 3.9150 2.9130 0.0000 7 7 3.1188 3.9766 -0.0998 8 6 3.6169 5.1926 -0.1012 9 7 4.9136 5.4207 -0.0046 10 6 5.7758 4.4269 0.0981 11 6 5.2993 3.1134 0.1035 12 7 6.1733 2.0346 0.2106 13 6 7.2868 2.1415 0.9623 14 8 7.4785 3.1400 1.6235 15 6 8.2935 1.0203 0.9816 16 6 9.4362 1.3867 1.8931 17 1 9.4336 2.3364 2.4075 18 6 10.4851 0.5096 2.0705 19 7 10.4881 -0.6471 1.4446 20 14 11.9012 0.9635 3.2010 21 1 11.6597 2.3090 3.7813 22 1 12.0022 -0.0366 4.2940 23 1 13.1678 0.9793 2.4259 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.9434 6.0329 -0.1840 30 1 6.8347 4.6258 0.1721 31 1 5.9808 1.2064 -0.2561 32 1 7.8167 0.1100 1.3451 33 1 8.6718 0.8544 -0.0271 34 1 11.2263 -1.2640 1.5692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:29 Heat of formation + Delta-G solvation = -90.302685 kcal Electronic energy + Delta-G solvation = -21105.888045 eV Core-core repulsion = 17617.668969 eV Total energy + Delta-G solvation = -3488.219076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.85174 -41.32690 -40.66995 -38.05561 -36.31258 -35.23971 -35.12178 -32.70423 -32.24697 -30.63565 -27.42859 -26.46157 -24.94163 -24.13301 -22.84997 -21.80356 -19.95592 -19.25948 -18.92594 -18.39009 -18.01823 -17.88649 -17.39576 -16.54496 -16.47026 -16.19815 -15.86317 -15.08767 -15.04931 -14.81534 -14.61642 -14.25408 -13.66277 -13.45077 -13.04818 -12.97138 -12.79819 -12.67522 -12.55073 -12.37015 -12.15146 -12.13337 -12.06401 -11.60167 -11.48102 -10.98193 -10.65214 -10.56334 -9.76335 -8.27628 -6.35975 -1.00864 -0.36705 1.08091 1.17900 1.40676 1.42067 1.53428 1.55906 1.82744 2.42137 2.54194 2.67620 2.99381 3.08582 3.15738 3.38738 3.77408 3.99535 4.03040 4.22605 4.33680 4.41880 4.72149 4.88849 4.92486 4.99401 5.02490 5.15107 5.19298 5.29532 5.50925 5.70130 5.90700 6.25792 6.34562 6.74330 6.76823 7.02064 7.33867 8.84683 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.004426 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.284312 B = 6324.959066 C = 7543.338682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.332 6.332 4 C 0.531 3.469 5 O -0.508 6.508 6 C 0.090 3.910 7 N -0.455 5.455 8 C 0.268 3.732 9 N -0.480 5.480 10 C 0.148 3.852 11 C 0.114 3.886 12 N -0.655 5.655 13 C 0.527 3.473 14 O -0.544 6.544 15 C 0.011 3.989 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.273 1.273 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.251 0.749 30 H 0.179 0.821 31 H 0.430 0.570 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.352 4.242 -6.053 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.247 6.247 4 C 0.374 3.626 5 O -0.395 6.395 6 C -0.057 4.057 7 N -0.170 5.170 8 C -0.019 4.019 9 N -0.194 5.194 10 C -0.025 4.025 11 C 0.010 3.990 12 N -0.306 5.306 13 C 0.318 3.682 14 O -0.420 6.420 15 C -0.028 4.028 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.198 1.198 24 H 0.122 0.878 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.267 0.733 30 H 0.196 0.804 31 H 0.273 0.727 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.541 5.090 -5.681 20.977 hybrid contribution 1.419 -1.329 0.385 1.982 sum -18.122 3.761 -5.296 19.251 Atomic orbital electron populations 1.21825 0.89874 1.04576 1.03849 1.23534 0.97494 0.78194 1.03291 1.86655 1.21036 1.34420 1.82562 1.20470 0.82009 0.87376 0.72753 1.90771 1.60769 1.41639 1.46365 1.20272 0.88020 0.92650 1.04795 1.68429 1.38722 0.99374 1.10508 1.25836 0.89953 0.93845 0.92290 1.68415 1.05109 1.35488 1.10363 1.23560 1.01585 0.85757 0.91624 1.19696 0.89867 0.91639 0.97800 1.44040 1.21537 1.15836 1.49160 1.21935 0.80773 0.89553 0.75904 1.90554 1.76191 1.33230 1.41998 1.19121 0.92067 0.91946 0.99690 1.21364 1.04664 1.03986 1.27527 0.91902 1.25787 1.00860 0.94654 0.97430 1.70045 1.33318 1.09225 1.43715 0.85373 0.78624 0.78327 0.78587 1.19641 1.20064 1.19798 0.87753 0.91414 0.90969 0.90244 0.91002 0.73296 0.80426 0.72657 0.93628 0.92813 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.29 71.98 0.74 -0.94 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.33 -8.19 10.08 -56.03 -0.56 -8.75 16 4 C 0.53 15.41 7.95 70.41 0.56 15.97 16 5 O -0.51 -16.24 13.84 20.04 0.28 -15.96 16 6 C 0.09 2.68 6.81 42.01 0.29 2.97 16 7 N -0.45 -11.73 10.25 -188.94 -1.94 -13.66 16 8 C 0.27 5.90 12.26 180.93 2.22 8.12 16 9 N -0.48 -13.03 10.41 -199.50 -2.08 -15.11 16 10 C 0.15 4.70 9.93 85.03 0.84 5.54 16 11 C 0.11 3.74 6.30 38.81 0.24 3.99 16 12 N -0.66 -23.70 4.75 -302.33 -1.43 -25.13 16 13 C 0.53 23.32 7.58 87.65 0.66 23.99 16 14 O -0.54 -26.43 13.31 -3.02 -0.04 -26.47 16 15 C 0.01 0.56 5.46 29.10 0.16 0.72 16 16 C -0.54 -30.52 8.92 25.60 0.23 -30.29 16 17 H 0.06 3.70 6.75 -2.91 -0.02 3.68 16 18 C 0.01 0.66 5.46 84.65 0.46 1.12 16 19 N -0.92 -53.10 13.29 21.45 0.28 -52.82 16 20 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.25 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.18 6.05 6.65 -2.91 -0.02 6.03 16 31 H 0.43 14.58 6.44 -92.71 -0.60 13.99 16 32 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -67.30 307.12 3.94 -63.36 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.55 Total: 15.77 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 6.85 Total: 32.48 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -5.16 Total: -106.72 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -0.33 Total: -51.18 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.30 3.94 -63.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.943 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds