Wall clock time and date at job start Tue Mar 31 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36827 * 120.00002 * 2 1 4 4 H 1.08005 * 120.00001 * 186.98498 * 3 2 1 5 5 C 1.38927 * 120.00403 * 6.98859 * 3 2 1 6 6 N 1.31465 * 119.99446 * 24.99297 * 5 3 2 7 7 Si 1.86792 * 120.00037 * 204.99690 * 5 3 2 8 8 H 1.48496 * 109.47534 * 94.99750 * 7 5 3 9 9 H 1.48501 * 109.47008 * 214.99560 * 7 5 3 10 10 H 1.48504 * 109.47380 * 334.99585 * 7 5 3 11 11 C 1.37832 * 119.99603 * 179.97438 * 2 1 3 12 12 N 1.32747 * 120.92465 * 265.12248 * 11 2 1 13 13 C 1.32256 * 121.48964 * 179.97438 * 12 11 2 14 14 C 1.50691 * 118.50717 * 180.02562 * 13 12 11 15 15 F 1.39906 * 109.47434 * 209.97900 * 14 13 12 16 16 F 1.39901 * 109.47217 * 329.97813 * 14 13 12 17 17 N 1.31253 * 122.98482 * 359.97438 * 13 12 11 18 18 C 1.34086 * 120.47648 * 0.02562 * 17 13 12 19 19 C 1.40164 * 121.99397 * 179.97438 * 18 17 13 20 20 C 1.36335 * 119.57530 * 179.97438 * 19 18 17 21 21 C 1.39201 * 121.03271 * 0.06339 * 20 19 18 22 22 C 1.36425 * 120.90376 * 359.97438 * 21 20 19 23 23 C 1.39896 * 119.50220 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47003 * 275.83420 * 1 2 3 25 25 H 1.08999 * 109.47006 * 35.83400 * 1 2 3 26 26 H 1.09000 * 109.47665 * 155.83540 * 1 2 3 27 27 H 0.97004 * 119.99506 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47419 * 89.97600 * 14 13 12 29 29 H 1.07999 * 120.21251 * 359.97438 * 19 18 17 30 30 H 1.08001 * 119.47953 * 180.02562 * 20 19 18 31 31 H 1.07998 * 119.55228 * 180.02562 * 21 20 19 32 32 H 1.08001 * 120.24858 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.2231 1.1884 -0.1137 5 6 1.4623 2.3837 0.1464 6 7 0.2977 2.4036 0.7559 7 14 2.1936 3.9668 -0.5229 8 1 1.6485 4.2294 -1.8790 9 1 1.8428 5.0938 0.3783 10 1 3.6708 3.8360 -0.6000 11 6 2.1540 -1.1937 0.0005 12 7 2.5790 -1.7356 1.1354 13 6 3.2407 -2.8807 1.1490 14 6 3.6912 -3.4353 2.4757 15 9 4.8645 -4.1762 2.2973 16 9 3.9355 -2.3816 3.3629 17 7 3.5219 -3.5564 0.0594 18 6 3.1395 -3.0996 -1.1418 19 6 3.4232 -3.7948 -2.3254 20 6 3.0102 -3.2851 -3.5206 21 6 2.3114 -2.0830 -3.5851 22 6 2.0194 -1.3806 -2.4526 23 6 2.4288 -1.8759 -1.2100 24 1 -0.3633 0.1045 1.0224 25 1 -0.3633 0.8331 -0.6016 26 1 -0.3634 -0.9376 -0.4207 27 1 -0.1817 3.2407 0.8584 28 1 2.9127 -4.0802 2.8832 29 1 3.9654 -4.7281 -2.2908 30 1 3.2293 -3.8223 -4.4316 31 1 1.9953 -1.7014 -4.5447 32 1 1.4770 -0.4487 -2.5150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:41 Heat of formation + Delta-G solvation = 3.806006 kcal Electronic energy + Delta-G solvation = -21444.818179 eV Core-core repulsion = 17849.592446 eV Total energy + Delta-G solvation = -3595.225733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.60751 -46.62088 -40.65689 -37.22213 -36.52902 -33.12518 -31.62943 -30.61627 -29.98383 -26.85061 -26.55952 -24.87136 -22.95258 -22.31530 -20.83272 -18.34856 -18.00281 -17.32968 -17.15079 -16.51477 -16.29941 -15.72577 -14.88129 -14.38432 -14.21851 -14.09605 -13.62674 -13.48529 -13.42306 -12.95416 -12.60417 -12.50746 -12.04009 -11.77305 -11.64756 -11.48383 -11.33616 -11.06850 -10.93992 -10.54466 -10.48063 -10.16334 -10.09074 -9.14243 -8.78364 -8.58763 -7.95124 -7.62243 -6.48204 -3.62522 0.63961 1.23926 2.35866 3.08838 3.15757 3.18950 3.35648 3.62034 3.93789 4.31322 4.34729 4.49458 4.72156 4.89681 5.09184 5.20300 5.25135 5.35556 5.46655 5.56645 5.79342 6.03025 6.18614 6.26249 6.40442 6.55829 6.77558 6.80503 6.89480 7.13991 7.20918 7.28174 7.67174 7.79015 8.47123 8.75944 9.18526 9.49935 10.53720 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.007302 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.737563 B = 3833.480211 C = 5170.500169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.506 5.506 3 C -0.248 4.248 4 H 0.090 0.910 5 C 0.015 3.985 6 N -0.859 5.859 7 Si 0.926 3.074 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.446 3.554 12 N -0.542 5.542 13 C 0.265 3.735 14 C 0.350 3.650 15 F -0.189 7.189 16 F -0.184 7.184 17 N -0.533 5.533 18 C 0.173 3.827 19 C -0.126 4.126 20 C -0.081 4.081 21 C -0.156 4.156 22 C -0.047 4.047 23 C -0.157 4.157 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.015 0.985 27 H 0.270 0.730 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 -8.139 -5.092 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.216 5.216 3 C -0.376 4.376 4 H 0.108 0.892 5 C -0.190 4.190 6 N -0.496 5.496 7 Si 0.752 3.248 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.199 3.801 12 N -0.264 5.264 13 C -0.009 4.009 14 C 0.294 3.706 15 F -0.171 7.171 16 F -0.165 7.165 17 N -0.254 5.254 18 C 0.046 3.954 19 C -0.146 4.146 20 C -0.102 4.102 21 C -0.175 4.175 22 C -0.068 4.068 23 C -0.165 4.165 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.280 -8.279 -4.146 9.347 hybrid contribution 0.184 1.268 -0.732 1.476 sum 1.464 -7.011 -4.878 8.666 Atomic orbital electron populations 1.21221 0.78702 0.97817 1.01410 1.41775 1.03597 0.99206 1.76989 1.19793 0.93359 0.81495 1.42926 0.89185 1.25205 0.97128 0.99088 0.97562 1.70169 1.15119 1.27854 1.36505 0.85890 0.79323 0.80683 0.78866 1.20231 1.20865 1.19476 1.18491 0.89619 0.85410 0.86628 1.68250 1.14840 1.10871 1.32441 1.22975 0.93628 0.90325 0.93988 1.19633 0.84787 0.81756 0.84397 1.93002 1.51413 1.76794 1.95853 1.93040 1.95131 1.59440 1.68887 1.68288 1.24652 1.34802 0.97625 1.18784 0.93445 0.91215 0.91962 1.20508 1.03006 1.00950 0.90164 1.20854 0.96510 0.95564 0.97310 1.20825 1.02080 0.96103 0.98502 1.20981 0.96074 0.99148 0.90642 1.19935 1.02509 0.97912 0.96194 0.93470 0.91058 0.96590 0.92016 0.85677 0.85193 0.85893 0.86020 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.40 9.02 59.85 0.54 3.94 16 2 N -0.51 -12.22 2.30 -121.90 -0.28 -12.50 16 3 C -0.25 -6.32 9.67 -15.07 -0.15 -6.47 16 4 H 0.09 2.35 7.95 -52.48 -0.42 1.93 16 5 C 0.02 0.38 4.93 -17.45 -0.09 0.29 16 6 N -0.86 -21.85 10.58 55.50 0.59 -21.27 16 7 Si 0.93 19.41 29.62 -169.99 -5.04 14.38 16 8 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 C 0.45 10.37 6.09 -154.89 -0.94 9.43 16 12 N -0.54 -12.73 9.96 -9.69 -0.10 -12.83 16 13 C 0.26 5.52 7.38 -157.26 -1.16 4.36 16 14 C 0.35 6.03 5.78 36.00 0.21 6.24 16 15 F -0.19 -3.27 17.01 2.25 0.04 -3.24 16 16 F -0.18 -3.51 17.01 2.25 0.04 -3.47 16 17 N -0.53 -10.88 9.97 -8.81 -0.09 -10.97 16 18 C 0.17 3.40 6.61 -84.85 -0.56 2.84 16 19 C -0.13 -2.00 10.01 -39.54 -0.40 -2.40 16 20 C -0.08 -1.10 9.95 -39.91 -0.40 -1.50 16 21 C -0.16 -2.26 9.96 -39.88 -0.40 -2.65 16 22 C -0.05 -0.85 9.59 -39.61 -0.38 -1.23 16 23 C -0.16 -3.23 5.76 -106.67 -0.61 -3.85 16 24 H 0.05 1.14 7.73 -51.93 -0.40 0.74 16 25 H 0.07 1.62 6.62 -51.93 -0.34 1.28 16 26 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.13 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 2.48 7.66 -52.49 -0.40 2.08 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -28.58 291.09 -7.59 -36.17 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -2.81 Total: 0.34 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -4.33 Total: 9.00 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.12 Total: -57.56 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.08 Total: -6.70 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.04 Total: 14.38 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.58 -7.59 -36.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.975 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds