Wall clock time and date at job start Tue Mar 31 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36827 * 120.00002 * 2 1 4 4 H 1.08005 * 120.00001 * 186.98498 * 3 2 1 5 5 C 1.38927 * 120.00403 * 6.98859 * 3 2 1 6 6 N 1.31465 * 119.99446 * 24.99297 * 5 3 2 7 7 Si 1.86792 * 120.00037 * 204.99690 * 5 3 2 8 8 H 1.48496 * 109.47534 * 94.99750 * 7 5 3 9 9 H 1.48501 * 109.47008 * 214.99560 * 7 5 3 10 10 H 1.48504 * 109.47380 * 334.99585 * 7 5 3 11 11 C 1.37832 * 119.99603 * 179.97438 * 2 1 3 12 12 N 1.32747 * 120.92465 * 265.12248 * 11 2 1 13 13 C 1.32256 * 121.48964 * 179.97438 * 12 11 2 14 14 C 1.50691 * 118.50717 * 180.02562 * 13 12 11 15 15 F 1.39906 * 109.47434 * 209.97900 * 14 13 12 16 16 F 1.39901 * 109.47217 * 329.97813 * 14 13 12 17 17 N 1.31253 * 122.98482 * 359.97438 * 13 12 11 18 18 C 1.34086 * 120.47648 * 0.02562 * 17 13 12 19 19 C 1.40164 * 121.99397 * 179.97438 * 18 17 13 20 20 C 1.36335 * 119.57530 * 179.97438 * 19 18 17 21 21 C 1.39201 * 121.03271 * 0.06339 * 20 19 18 22 22 C 1.36425 * 120.90376 * 359.97438 * 21 20 19 23 23 C 1.39896 * 119.50220 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47003 * 275.83420 * 1 2 3 25 25 H 1.08999 * 109.47006 * 35.83400 * 1 2 3 26 26 H 1.09000 * 109.47665 * 155.83540 * 1 2 3 27 27 H 0.97004 * 119.99506 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47419 * 89.97600 * 14 13 12 29 29 H 1.07999 * 120.21251 * 359.97438 * 19 18 17 30 30 H 1.08001 * 119.47953 * 180.02562 * 20 19 18 31 31 H 1.07998 * 119.55228 * 180.02562 * 21 20 19 32 32 H 1.08001 * 120.24858 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.2231 1.1884 -0.1137 5 6 1.4623 2.3837 0.1464 6 7 0.2977 2.4036 0.7559 7 14 2.1936 3.9668 -0.5229 8 1 1.6485 4.2294 -1.8790 9 1 1.8428 5.0938 0.3783 10 1 3.6708 3.8360 -0.6000 11 6 2.1540 -1.1937 0.0005 12 7 2.5790 -1.7356 1.1354 13 6 3.2407 -2.8807 1.1490 14 6 3.6912 -3.4353 2.4757 15 9 4.8645 -4.1762 2.2973 16 9 3.9355 -2.3816 3.3629 17 7 3.5219 -3.5564 0.0594 18 6 3.1395 -3.0996 -1.1418 19 6 3.4232 -3.7948 -2.3254 20 6 3.0102 -3.2851 -3.5206 21 6 2.3114 -2.0830 -3.5851 22 6 2.0194 -1.3806 -2.4526 23 6 2.4288 -1.8759 -1.2100 24 1 -0.3633 0.1045 1.0224 25 1 -0.3633 0.8331 -0.6016 26 1 -0.3634 -0.9376 -0.4207 27 1 -0.1817 3.2407 0.8584 28 1 2.9127 -4.0802 2.8832 29 1 3.9654 -4.7281 -2.2908 30 1 3.2293 -3.8223 -4.4316 31 1 1.9953 -1.7014 -4.5447 32 1 1.4770 -0.4487 -2.5150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:40 Heat of formation + Delta-G solvation = -12.023204 kcal Electronic energy + Delta-G solvation = -21445.504585 eV Core-core repulsion = 17849.592446 eV Total energy + Delta-G solvation = -3595.912139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.04679 -48.06819 -42.29341 -38.70869 -38.17520 -34.80078 -33.24446 -32.11831 -31.51441 -28.33143 -28.26071 -26.54080 -24.48692 -23.79297 -22.41877 -19.84932 -19.62264 -18.91015 -18.60226 -18.04689 -17.75945 -17.34689 -16.38774 -16.05332 -15.81407 -15.46063 -15.14505 -15.05415 -14.88692 -14.40363 -14.25749 -14.03690 -13.43416 -13.30161 -13.21969 -13.13941 -12.78382 -12.58577 -12.42854 -12.28994 -12.15613 -11.77241 -11.70570 -10.87905 -10.33627 -10.21526 -9.50993 -9.24338 -8.16131 -5.53915 -0.85220 -0.29190 0.87367 1.43852 1.44810 1.55362 1.88921 2.12151 2.31211 2.70107 2.95269 2.98512 3.02445 3.30970 3.62816 3.79437 3.84483 3.96858 4.10387 4.26774 4.38348 4.42615 4.60144 4.84990 5.02233 5.09664 5.23581 5.27303 5.41568 5.45196 5.47808 5.80836 5.98661 6.11321 6.77687 7.02955 7.51667 7.82193 8.88779 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.007302 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.737563 B = 3833.480211 C = 5170.500169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.543 5.543 3 C -0.287 4.287 4 H 0.065 0.935 5 C -0.021 4.021 6 N -0.909 5.909 7 Si 0.981 3.019 8 H -0.267 1.267 9 H -0.288 1.288 10 H -0.276 1.276 11 C 0.464 3.536 12 N -0.573 5.573 13 C 0.242 3.758 14 C 0.352 3.648 15 F -0.189 7.189 16 F -0.197 7.197 17 N -0.510 5.510 18 C 0.140 3.860 19 C -0.117 4.117 20 C -0.058 4.058 21 C -0.117 4.117 22 C -0.070 4.070 23 C -0.173 4.173 24 H 0.011 0.989 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.181 0.819 31 H 0.166 0.834 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -11.629 -8.520 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.261 5.261 3 C -0.415 4.415 4 H 0.083 0.917 5 C -0.221 4.221 6 N -0.550 5.550 7 Si 0.806 3.194 8 H -0.192 1.192 9 H -0.214 1.214 10 H -0.201 1.201 11 C 0.216 3.784 12 N -0.294 5.294 13 C -0.032 4.032 14 C 0.296 3.704 15 F -0.170 7.170 16 F -0.178 7.178 17 N -0.227 5.227 18 C 0.012 3.988 19 C -0.136 4.136 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.091 4.091 23 C -0.181 4.181 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.192 0.808 29 H 0.176 0.824 30 H 0.198 0.802 31 H 0.184 0.816 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.633 -11.895 -7.601 14.360 hybrid contribution 0.053 1.611 -0.015 1.612 sum 2.686 -10.285 -7.616 13.076 Atomic orbital electron populations 1.20859 0.78628 0.97925 0.99183 1.41692 1.03445 0.98954 1.82001 1.19346 0.92084 0.82794 1.47247 0.91700 1.25695 0.97632 1.00881 0.97874 1.70277 1.17028 1.27718 1.40024 0.85092 0.78057 0.77785 0.78476 1.19242 1.21375 1.20087 1.19158 0.86236 0.85591 0.87367 1.68296 1.15106 1.11970 1.34022 1.23675 0.94222 0.89536 0.95730 1.20078 0.85794 0.81810 0.82692 1.93002 1.51680 1.76521 1.95768 1.93015 1.95276 1.60450 1.69104 1.68365 1.22104 1.34150 0.98087 1.19393 0.94575 0.91730 0.93059 1.20987 1.02064 1.01280 0.89309 1.21520 0.93306 0.94564 0.98503 1.21455 0.98099 0.95023 0.98899 1.21097 0.97391 0.99767 0.90833 1.20179 1.03256 0.98150 0.96554 0.97028 0.92017 0.94995 0.92664 0.80819 0.82430 0.80187 0.81599 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.53 9.02 127.77 1.15 9.68 16 2 N -0.54 -27.85 2.30 -539.57 -1.24 -29.09 16 3 C -0.29 -15.77 9.67 84.08 0.81 -14.96 16 4 H 0.07 3.69 7.95 -2.91 -0.02 3.67 16 5 C -0.02 -1.14 4.93 84.91 0.42 -0.72 16 6 N -0.91 -50.18 10.58 21.66 0.23 -49.95 16 7 Si 0.98 42.55 29.62 68.60 2.03 44.59 16 8 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 9 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 11 C 0.46 22.14 6.09 133.98 0.82 22.96 16 12 N -0.57 -27.50 9.96 -184.56 -1.84 -29.34 16 13 C 0.24 9.87 7.38 138.77 1.02 10.89 16 14 C 0.35 11.58 5.78 71.23 0.41 11.99 16 15 F -0.19 -6.13 17.01 44.97 0.76 -5.36 16 16 F -0.20 -7.50 17.01 44.97 0.77 -6.73 16 17 N -0.51 -19.60 9.97 -181.80 -1.81 -21.41 16 18 C 0.14 5.04 6.61 40.12 0.27 5.31 16 19 C -0.12 -3.02 10.01 22.29 0.22 -2.80 16 20 C -0.06 -1.13 9.95 22.06 0.22 -0.91 16 21 C -0.12 -2.65 9.96 22.08 0.22 -2.43 16 22 C -0.07 -2.33 9.59 22.25 0.21 -2.11 16 23 C -0.17 -6.93 5.76 -21.19 -0.12 -7.05 16 24 H 0.01 0.60 7.73 -2.38 -0.02 0.58 16 25 H 0.06 3.03 6.62 -2.39 -0.02 3.02 16 26 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 27 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.18 4.07 8.14 -2.39 -0.02 4.05 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.13 4.58 7.66 -2.91 -0.02 4.56 16 Total: -1.00 -68.70 291.09 5.72 -62.98 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.16 Total: 4.47 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: 5.66 Total: 29.85 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -4.66 Total: -129.80 kcal Atomic # 9 Polarization: -13.63 SS G_CDS: 1.53 Total: -12.10 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.70 5.72 -62.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.960 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds