Wall clock time and date at job start Tue Mar 31 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35617 * 117.00098 * 2 1 4 4 C 1.39158 * 120.50301 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.62712 * 179.97438 * 4 3 2 6 6 C 1.39943 * 119.59522 * 359.97438 * 5 4 3 7 7 N 1.38908 * 119.49357 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99988 * 0.02562 * 7 6 5 9 9 H 1.09002 * 110.65386 * 325.69493 * 8 7 6 10 10 C 1.54606 * 110.73242 * 202.51819 * 8 7 6 11 11 O 1.44036 * 102.54759 * 216.32085 * 10 8 7 12 12 N 1.41455 * 107.84680 * 26.89353 * 11 10 8 13 13 C 1.34772 * 111.67708 * 341.24589 * 12 11 10 14 14 O 1.21285 * 126.24478 * 181.17770 * 13 12 11 15 15 N 1.31861 * 121.00914 * 0.25714 * 6 5 4 16 16 C 1.33829 * 121.47108 * 359.48250 * 15 6 5 17 17 C 1.40913 * 119.84653 * 180.24061 * 16 15 6 18 18 H 1.07998 * 119.99748 * 180.26740 * 17 16 15 19 19 C 1.40023 * 120.00373 * 0.27015 * 17 16 15 20 20 N 1.30776 * 119.99794 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00174 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47126 * 90.00011 * 21 19 17 23 23 H 1.48507 * 109.47268 * 209.99745 * 21 19 17 24 24 H 1.48503 * 109.47521 * 329.99833 * 21 19 17 25 25 H 1.08999 * 109.46557 * 299.99193 * 1 2 3 26 26 H 1.08996 * 109.47321 * 59.98895 * 1 2 3 27 27 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.68226 * 359.95475 * 4 3 2 29 29 H 1.07998 * 120.19924 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99756 * 179.97438 * 7 6 5 31 31 H 1.09000 * 110.79151 * 334.58947 * 10 8 7 32 32 H 1.09000 * 110.79046 * 98.05627 * 10 8 7 33 33 H 0.97004 * 124.16192 * 161.24541 * 12 11 10 34 34 H 0.97000 * 120.00311 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0011 6 6 3.3644 3.6107 0.0016 7 7 4.0330 4.8282 0.0016 8 6 3.2736 6.0810 0.0016 9 1 2.3537 5.9730 -0.5733 10 6 4.1320 7.2415 -0.5522 11 8 3.7125 8.3556 0.2586 12 7 3.2618 7.8444 1.4981 13 6 2.9716 6.5307 1.4188 14 8 2.5467 5.8347 2.3166 15 7 4.0578 2.4891 -0.0035 16 6 3.4544 1.2946 0.0010 17 6 4.2291 0.1176 0.0005 18 1 3.7447 -0.8477 -0.0003 19 6 5.6270 0.1994 0.0010 20 7 6.2135 1.3682 0.0014 21 14 6.6539 -1.3609 0.0010 22 1 6.9265 -1.7741 -1.3991 23 1 7.9387 -1.1080 0.7015 24 1 5.9131 -2.4412 0.7006 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2177 2.3479 0.0002 29 1 1.4100 4.5196 0.0019 30 1 5.0028 4.8489 0.0023 31 1 5.1937 7.0386 -0.4117 32 1 3.9072 7.4216 -1.6035 33 1 3.1726 8.3741 2.3058 34 1 7.1819 1.4250 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167513701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:26 Heat of formation + Delta-G solvation = -1.347812 kcal Electronic energy + Delta-G solvation = -21672.569447 eV Core-core repulsion = 18188.207743 eV Total energy + Delta-G solvation = -3484.361704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56190 -38.75632 -37.37532 -36.86838 -34.74999 -33.21905 -31.57781 -30.33142 -29.97320 -27.80845 -26.34394 -25.05059 -23.69432 -21.65877 -21.27379 -20.19576 -18.35421 -17.54904 -16.96630 -16.50324 -16.35433 -15.86277 -15.33150 -14.81184 -14.59830 -14.52884 -14.04904 -13.91689 -13.68008 -13.23071 -12.69405 -12.41642 -12.36779 -12.13445 -11.60157 -11.23989 -11.20804 -11.04327 -10.72505 -10.55437 -10.43311 -10.06014 -9.79452 -9.43232 -9.11033 -8.50645 -8.01729 -7.69932 -6.38406 -6.38000 -4.33925 2.05695 2.50332 2.82828 3.12047 3.13376 3.18078 3.26733 3.70943 4.00639 4.12525 4.36155 4.59004 4.69057 4.84564 4.97850 5.33053 5.52524 5.82677 5.83725 5.99698 6.00412 6.11489 6.40252 6.62496 6.65380 6.75131 6.92692 7.19241 7.23260 7.43438 7.68863 8.08057 8.13604 8.26652 8.38825 8.55682 8.79615 9.15907 10.14569 10.35370 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.005732 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.763532 B = 4883.529030 C = 6129.095669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.071 4.071 4 C -0.114 4.114 5 C -0.329 4.329 6 C 0.392 3.608 7 N -0.715 5.715 8 C 0.115 3.885 9 H 0.126 0.874 10 C 0.027 3.973 11 O -0.145 6.145 12 N -0.598 5.598 13 C 0.493 3.507 14 O -0.480 6.480 15 N -0.508 5.508 16 C 0.288 3.712 17 C -0.412 4.412 18 H 0.092 0.908 19 C 0.068 3.932 20 N -0.716 5.716 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.402 0.598 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.435 0.565 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 9.184 -1.948 9.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C -0.119 4.119 4 C -0.138 4.138 5 C -0.356 4.356 6 C 0.155 3.845 7 N -0.354 5.354 8 C 0.002 3.998 9 H 0.143 0.857 10 C -0.051 4.051 11 O -0.152 6.152 12 N -0.308 5.308 13 C 0.276 3.724 14 O -0.351 6.351 15 N -0.229 5.229 16 C 0.160 3.840 17 C -0.444 4.444 18 H 0.110 0.890 19 C -0.157 4.157 20 N -0.338 5.338 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.185 1.185 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.239 0.761 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.283 0.717 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.986 8.963 -1.604 9.319 hybrid contribution -0.371 -0.067 0.301 0.482 sum -2.358 8.896 -1.303 9.295 Atomic orbital electron populations 1.22694 0.82122 1.01536 0.99715 1.85918 1.17904 1.27840 1.90834 1.20027 0.93409 0.83139 1.15281 1.20660 0.97378 0.92279 1.03530 1.20282 0.92608 0.96296 1.26386 1.18308 0.87631 0.86188 0.92338 1.43601 1.07394 1.00188 1.84221 1.21857 0.98291 0.86056 0.93590 0.85691 1.24179 0.99684 0.84858 0.96362 1.90872 1.84632 1.24140 1.15594 1.47823 1.68606 1.10120 1.04204 1.22020 0.77090 0.80916 0.92408 1.90858 1.43427 1.56474 1.44357 1.68302 1.34759 0.94885 1.25000 1.17729 0.85046 0.90879 0.90372 1.19531 0.90524 0.93104 1.41214 0.89038 1.26076 0.98761 0.97186 0.93694 1.70155 1.10177 1.24518 1.28915 0.86305 0.79023 0.82216 0.79145 1.19470 1.20297 1.18455 0.94423 0.94465 0.90153 0.88146 0.89226 0.76132 0.89475 0.85791 0.71715 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.39 9.61 -18.55 -0.18 -7.57 16 3 C -0.07 -1.83 6.74 -38.10 -0.26 -2.09 16 4 C -0.11 -2.69 9.12 -39.22 -0.36 -3.05 16 5 C -0.33 -7.69 9.24 -38.92 -0.36 -8.05 16 6 C 0.39 9.46 7.65 -155.26 -1.19 8.28 16 7 N -0.71 -13.69 5.34 -53.67 -0.29 -13.98 16 8 C 0.12 1.72 3.05 -67.73 -0.21 1.52 16 9 H 0.13 1.82 6.46 -51.93 -0.34 1.48 16 10 C 0.03 0.28 7.84 38.00 0.30 0.58 16 11 O -0.15 -1.64 12.49 -11.40 -0.14 -1.79 16 12 N -0.60 -7.41 7.31 31.49 0.23 -7.18 16 13 C 0.49 8.08 8.33 -10.48 -0.09 8.00 16 14 O -0.48 -10.09 18.03 5.55 0.10 -9.99 16 15 N -0.51 -13.90 7.88 -10.20 -0.08 -13.98 16 16 C 0.29 8.10 6.56 -84.85 -0.56 7.55 16 17 C -0.41 -11.33 8.94 -37.90 -0.34 -11.67 16 18 H 0.09 2.45 7.31 -52.49 -0.38 2.07 16 19 C 0.07 1.73 5.50 -17.33 -0.10 1.64 16 20 N -0.72 -18.75 11.45 55.55 0.64 -18.11 16 21 Si 0.91 18.90 29.56 -169.99 -5.02 13.88 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 26 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.10 2.07 6.43 -52.49 -0.34 1.73 16 29 H 0.09 1.89 6.20 -52.49 -0.33 1.56 16 30 H 0.40 7.47 8.53 -40.82 -0.35 7.12 16 31 H 0.09 0.86 7.81 -51.93 -0.41 0.46 16 32 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.43 4.28 8.96 -40.82 -0.37 3.92 16 34 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -33.41 297.46 -5.70 -39.11 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -3.28 Total: 10.81 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.16 Total: 4.32 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.50 Total: -53.25 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.22 Total: -19.35 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.41 -5.70 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167513701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.760 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds