Wall clock time and date at job start Tue Mar 31 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35617 * 117.00098 * 2 1 4 4 C 1.39158 * 120.50301 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.62712 * 179.97438 * 4 3 2 6 6 C 1.39943 * 119.59522 * 359.97438 * 5 4 3 7 7 N 1.38908 * 119.49357 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99988 * 0.02562 * 7 6 5 9 9 H 1.09002 * 110.65386 * 325.69493 * 8 7 6 10 10 C 1.54606 * 110.73242 * 202.51819 * 8 7 6 11 11 O 1.44036 * 102.54759 * 216.32085 * 10 8 7 12 12 N 1.41455 * 107.84680 * 26.89353 * 11 10 8 13 13 C 1.34772 * 111.67708 * 341.24589 * 12 11 10 14 14 O 1.21285 * 126.24478 * 181.17770 * 13 12 11 15 15 N 1.31861 * 121.00914 * 0.25714 * 6 5 4 16 16 C 1.33829 * 121.47108 * 359.48250 * 15 6 5 17 17 C 1.40913 * 119.84653 * 180.24061 * 16 15 6 18 18 H 1.07998 * 119.99748 * 180.26740 * 17 16 15 19 19 C 1.40023 * 120.00373 * 0.27015 * 17 16 15 20 20 N 1.30776 * 119.99794 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00174 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47126 * 90.00011 * 21 19 17 23 23 H 1.48507 * 109.47268 * 209.99745 * 21 19 17 24 24 H 1.48503 * 109.47521 * 329.99833 * 21 19 17 25 25 H 1.08999 * 109.46557 * 299.99193 * 1 2 3 26 26 H 1.08996 * 109.47321 * 59.98895 * 1 2 3 27 27 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.68226 * 359.95475 * 4 3 2 29 29 H 1.07998 * 120.19924 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99756 * 179.97438 * 7 6 5 31 31 H 1.09000 * 110.79151 * 334.58947 * 10 8 7 32 32 H 1.09000 * 110.79046 * 98.05627 * 10 8 7 33 33 H 0.97004 * 124.16192 * 161.24541 * 12 11 10 34 34 H 0.97000 * 120.00311 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0011 6 6 3.3644 3.6107 0.0016 7 7 4.0330 4.8282 0.0016 8 6 3.2736 6.0810 0.0016 9 1 2.3537 5.9730 -0.5733 10 6 4.1320 7.2415 -0.5522 11 8 3.7125 8.3556 0.2586 12 7 3.2618 7.8444 1.4981 13 6 2.9716 6.5307 1.4188 14 8 2.5467 5.8347 2.3166 15 7 4.0578 2.4891 -0.0035 16 6 3.4544 1.2946 0.0010 17 6 4.2291 0.1176 0.0005 18 1 3.7447 -0.8477 -0.0003 19 6 5.6270 0.1994 0.0010 20 7 6.2135 1.3682 0.0014 21 14 6.6539 -1.3609 0.0010 22 1 6.9265 -1.7741 -1.3991 23 1 7.9387 -1.1080 0.7015 24 1 5.9131 -2.4412 0.7006 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2177 2.3479 0.0002 29 1 1.4100 4.5196 0.0019 30 1 5.0028 4.8489 0.0023 31 1 5.1937 7.0386 -0.4117 32 1 3.9072 7.4216 -1.6035 33 1 3.1726 8.3741 2.3058 34 1 7.1819 1.4250 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167513701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:25 Heat of formation + Delta-G solvation = -27.792193 kcal Electronic energy + Delta-G solvation = -21673.716161 eV Core-core repulsion = 18188.207743 eV Total energy + Delta-G solvation = -3485.508418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76650 -40.54019 -38.64375 -38.56736 -36.38873 -34.99433 -32.68995 -32.19901 -31.52599 -29.33125 -27.98542 -26.82457 -24.82034 -23.35617 -22.86433 -21.74274 -19.60140 -19.30193 -18.40746 -18.22515 -17.82846 -17.24554 -16.65705 -16.47750 -16.23076 -16.11549 -15.25787 -15.21323 -15.01970 -14.80669 -14.32828 -14.13313 -14.02828 -13.38556 -13.30149 -12.90521 -12.88083 -12.47788 -12.29655 -12.16583 -12.03062 -11.58974 -11.55412 -11.19191 -10.20715 -10.13537 -9.92622 -9.61070 -8.26148 -8.17842 -6.31190 0.96694 1.02445 1.22170 1.27871 1.43601 1.55991 1.59311 2.27873 2.34983 2.83745 2.99383 3.03666 3.27178 3.59733 3.93575 3.99482 4.27057 4.42979 4.48651 4.51998 4.57178 4.64970 4.75636 4.88073 4.89891 5.32921 5.45627 5.58770 5.65394 5.82605 5.85559 6.26031 6.37549 6.62465 6.78399 6.90062 6.94169 7.30543 8.24929 8.49364 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.005732 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.763532 B = 4883.529030 C = 6129.095669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C -0.094 4.094 4 C -0.115 4.115 5 C -0.330 4.330 6 C 0.378 3.622 7 N -0.709 5.709 8 C 0.108 3.892 9 H 0.132 0.868 10 C 0.039 3.961 11 O -0.135 6.135 12 N -0.579 5.579 13 C 0.488 3.512 14 O -0.536 6.536 15 N -0.536 5.536 16 C 0.251 3.749 17 C -0.449 4.449 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.747 5.747 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.262 1.262 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.403 0.597 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.448 0.552 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 10.323 -2.723 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.251 6.251 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.356 4.356 6 C 0.141 3.859 7 N -0.347 5.347 8 C -0.004 4.004 9 H 0.150 0.850 10 C -0.038 4.038 11 O -0.143 6.143 12 N -0.287 5.287 13 C 0.271 3.729 14 O -0.412 6.412 15 N -0.259 5.259 16 C 0.122 3.878 17 C -0.481 4.481 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.369 5.369 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.186 1.186 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.240 0.760 31 H 0.116 0.884 32 H 0.180 0.820 33 H 0.299 0.701 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.006 10.200 -2.387 10.666 hybrid contribution -0.490 -0.246 0.524 0.759 sum -2.496 9.954 -1.863 10.430 Atomic orbital electron populations 1.23029 0.79100 1.04049 1.00542 1.85852 1.21059 1.27217 1.90960 1.20082 0.93267 0.84518 1.16319 1.21025 0.98898 0.91721 1.02326 1.20616 0.92692 0.97219 1.25072 1.18696 0.88464 0.87035 0.91749 1.43635 1.07630 1.00116 1.83341 1.22157 0.99250 0.85670 0.93330 0.85018 1.24369 0.99436 0.82251 0.97774 1.90913 1.84574 1.24007 1.14773 1.47609 1.66743 1.09118 1.05224 1.22144 0.76590 0.81823 0.92314 1.90831 1.46176 1.58175 1.46000 1.68261 1.35965 0.95622 1.26023 1.18187 0.86697 0.91611 0.91260 1.19722 0.91953 0.92885 1.43552 0.89822 1.26910 0.99188 1.00751 0.92781 1.70218 1.10872 1.26537 1.29299 0.85163 0.77211 0.77562 0.79463 1.18539 1.19078 1.18575 0.93756 0.93216 0.86959 0.85219 0.86954 0.76032 0.88361 0.82042 0.70144 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.83 113.37 1.11 2.07 16 2 O -0.34 -16.20 9.61 -89.29 -0.86 -17.06 16 3 C -0.09 -4.98 6.74 23.23 0.16 -4.82 16 4 C -0.12 -5.42 9.12 22.51 0.21 -5.22 16 5 C -0.33 -15.30 9.24 22.70 0.21 -15.09 16 6 C 0.38 18.46 7.65 133.45 1.02 19.48 16 7 N -0.71 -26.81 5.34 -323.71 -1.73 -28.54 16 8 C 0.11 3.02 3.05 45.12 0.14 3.16 16 9 H 0.13 3.52 6.46 -2.39 -0.02 3.51 16 10 C 0.04 0.68 7.84 72.53 0.57 1.25 16 11 O -0.14 -2.59 12.49 -38.46 -0.48 -3.07 16 12 N -0.58 -13.05 7.31 -172.68 -1.26 -14.31 16 13 C 0.49 15.43 8.33 87.98 0.73 16.16 16 14 O -0.54 -22.63 18.03 -3.05 -0.05 -22.69 16 15 N -0.54 -30.24 7.88 -186.18 -1.47 -31.71 16 16 C 0.25 14.65 6.56 40.23 0.26 14.91 16 17 C -0.45 -25.73 8.94 23.36 0.21 -25.52 16 18 H 0.08 4.71 7.31 -2.91 -0.02 4.69 16 19 C 0.03 1.34 5.50 85.28 0.47 1.81 16 20 N -0.75 -40.07 11.45 21.84 0.25 -39.81 16 21 Si 0.99 39.41 29.56 68.60 2.03 41.44 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 H 0.04 1.43 7.69 -2.39 -0.02 1.41 16 26 H 0.05 1.55 7.69 -2.39 -0.02 1.53 16 27 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.13 5.16 6.43 -2.91 -0.02 5.14 16 29 H 0.11 4.58 6.20 -2.91 -0.02 4.57 16 30 H 0.40 14.87 8.53 -92.71 -0.79 14.08 16 31 H 0.10 1.61 7.81 -2.39 -0.02 1.59 16 32 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.45 7.90 8.96 -92.71 -0.83 7.07 16 34 H 0.28 13.37 8.29 -92.71 -0.77 12.60 16 Total: -1.00 -75.95 297.46 1.08 -74.87 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.44 Total: 32.69 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.09 Total: 8.18 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.21 Total: -114.37 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.39 Total: -42.82 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -75.95 1.08 -74.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167513701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.078 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds