Wall clock time and date at job start Tue Mar 31 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35406 * 116.99716 * 2 1 4 4 C 1.36286 * 126.46105 * 179.97438 * 3 2 1 5 5 N 1.33143 * 107.78587 * 179.97438 * 4 3 2 6 6 C 1.31440 * 108.83690 * 0.02562 * 5 4 3 7 7 C 1.46922 * 125.64603 * 180.02562 * 6 5 4 8 8 O 1.21671 * 120.00218 * 173.77808 * 7 6 5 9 9 N 1.34779 * 120.00050 * 353.77731 * 7 6 5 10 10 C 1.46496 * 120.00217 * 4.24995 * 9 7 6 11 11 C 1.50697 * 109.47122 * 83.59454 * 10 9 7 12 12 H 1.08005 * 119.99615 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00471 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99577 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00440 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46880 * 59.99966 * 15 13 11 17 17 H 1.48497 * 109.47408 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47194 * 299.99968 * 15 13 11 19 19 C 1.46502 * 120.00022 * 184.25536 * 9 7 6 20 20 C 1.52993 * 109.47551 * 87.40824 * 19 9 7 21 21 C 1.47205 * 109.47649 * 180.02562 * 20 19 9 22 22 N 9.03388 * 122.02181 * 193.93102 * 3 1 2 23 23 O 1.34386 * 126.47005 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47332 * 299.99995 * 1 2 3 25 25 H 1.09002 * 109.47377 * 59.99681 * 1 2 3 26 26 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 27 27 H 1.08000 * 126.10725 * 359.72255 * 4 3 2 28 28 H 1.08996 * 109.47234 * 203.59909 * 10 9 7 29 29 H 1.09005 * 109.47152 * 323.59633 * 10 9 7 30 30 H 0.97001 * 119.99649 * 179.97438 * 14 13 11 31 31 H 1.08994 * 109.47260 * 207.41412 * 19 9 7 32 32 H 1.09004 * 109.46850 * 327.41052 * 19 9 7 33 33 H 1.09007 * 109.47213 * 300.00378 * 20 19 9 34 34 H 1.08996 * 109.47155 * 59.99666 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 6 3.3880 1.4306 0.0005 5 7 3.5807 2.7480 -0.0003 6 6 2.4112 3.3480 -0.0006 7 6 2.1944 4.8011 -0.0020 8 8 1.0686 5.2481 -0.1165 9 7 3.2426 5.6390 0.1235 10 6 4.6060 5.1050 0.1676 11 6 5.1023 4.8779 -1.2370 12 1 4.4658 5.1087 -2.0785 13 6 6.3688 4.3755 -1.4480 14 7 7.1436 4.0940 -0.4233 15 14 6.9841 4.0946 -3.1892 16 1 6.9811 5.3822 -3.9290 17 1 8.3657 3.5521 -3.1445 18 1 6.0945 3.1257 -3.8784 19 6 3.0184 7.0838 0.2159 20 6 2.7885 7.4719 1.6778 21 6 2.5627 8.9235 1.7706 22 7 2.3893 10.0434 1.8440 23 8 1.4434 2.4088 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.1592 0.6746 0.0052 28 1 5.2588 5.8168 0.6730 29 1 4.6088 4.1602 0.7112 30 1 8.0345 3.7402 -0.5717 31 1 3.8914 7.6122 -0.1673 32 1 2.1424 7.3540 -0.3738 33 1 1.9154 6.9435 2.0610 34 1 3.6644 7.2016 2.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195795436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:59 Heat of formation + Delta-G solvation = 3.209789 kcal Electronic energy + Delta-G solvation = -21571.140318 eV Core-core repulsion = 18086.976247 eV Total energy + Delta-G solvation = -3484.164071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.08481 -39.33927 -38.54051 -36.70392 -35.54020 -34.43188 -32.76819 -31.37709 -29.58007 -27.40221 -27.12734 -24.64311 -23.27463 -22.52599 -21.99682 -19.51252 -18.43699 -17.58622 -17.14745 -16.88872 -16.28816 -16.15597 -15.39193 -15.15290 -14.86524 -14.64325 -14.27741 -14.19182 -13.42330 -12.99190 -12.95365 -12.48843 -12.38105 -12.30450 -12.17217 -11.83042 -11.66581 -11.60806 -11.04456 -10.97771 -10.81059 -10.71155 -10.20386 -9.87273 -9.67863 -9.45940 -8.39047 -8.13310 -7.90047 -6.03962 -4.05640 1.31567 2.08723 2.69103 2.84134 2.91760 3.06552 3.31819 3.36295 3.39790 3.69173 3.81034 4.29125 4.42833 4.68566 4.88822 4.95533 5.14529 5.20025 5.24662 5.26459 5.33249 5.60772 5.61925 5.93715 6.04695 6.16255 6.44067 6.52955 6.85394 7.34090 7.54551 7.66957 7.83472 7.91602 8.08758 8.19269 8.57316 8.94613 9.57225 11.04622 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.007725 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.997256 B = 3623.546891 C = 5897.761273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.256 6.256 3 C 0.150 3.850 4 C -0.055 4.055 5 N -0.335 5.335 6 C 0.123 3.877 7 C 0.618 3.382 8 O -0.554 6.554 9 N -0.565 5.565 10 C 0.218 3.782 11 C -0.517 4.517 12 H 0.053 0.947 13 C 0.074 3.926 14 N -0.887 5.887 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.279 1.279 19 C 0.128 3.872 20 C -0.047 4.047 21 C 0.221 3.779 22 N -0.448 5.448 23 O -0.204 6.204 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.193 0.807 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.262 0.738 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -6.246 3.533 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.169 6.169 3 C 0.051 3.949 4 C -0.199 4.199 5 N -0.066 5.066 6 C -0.081 4.081 7 C 0.403 3.597 8 O -0.433 6.433 9 N -0.296 5.296 10 C 0.100 3.900 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.128 4.128 14 N -0.526 5.526 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.204 1.204 19 C 0.003 3.997 20 C -0.088 4.088 21 C -0.096 4.096 22 N -0.125 5.125 23 O -0.093 6.093 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.210 0.790 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.780 -4.212 3.637 10.395 hybrid contribution -0.334 -1.301 -1.152 1.770 sum -9.114 -5.513 2.485 10.937 Atomic orbital electron populations 1.23147 0.77005 1.04575 1.02723 1.86402 1.22830 1.18125 1.89586 1.22079 0.90998 0.78426 1.03389 1.22905 0.91024 0.94200 1.11805 1.71222 1.22690 1.04009 1.08681 1.24784 0.79854 0.91836 1.11610 1.15802 0.84814 0.81029 0.78039 1.90805 1.23174 1.76723 1.52640 1.47945 1.09056 1.04670 1.67890 1.20224 0.73875 0.96920 0.98980 1.21156 0.99428 1.43398 0.91587 0.92859 1.24723 0.96537 0.95101 0.96486 1.69896 1.09091 1.43981 1.29597 0.86729 0.77815 0.78516 0.85315 1.20444 1.21302 1.20436 1.21254 1.04102 0.81007 0.93306 1.19783 1.05606 0.82432 1.01016 1.29005 0.92659 0.94964 0.93020 1.81171 1.09676 1.12903 1.08756 1.84360 1.39006 1.14809 1.71141 0.91915 0.91889 0.87349 0.78975 0.94514 0.89861 0.92839 0.88377 0.89580 0.87204 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.78 101.05 1.09 1.28 16 2 O -0.26 -3.35 10.55 -41.00 -0.43 -3.79 16 3 C 0.15 2.42 7.95 30.03 0.24 2.65 16 4 C -0.05 -0.95 11.92 -17.69 -0.21 -1.16 16 5 N -0.34 -6.86 6.94 -11.67 -0.08 -6.94 16 6 C 0.12 2.43 7.78 -14.21 -0.11 2.32 16 7 C 0.62 12.25 7.58 -12.74 -0.10 12.16 16 8 O -0.55 -11.51 16.70 -0.43 -0.01 -11.51 16 9 N -0.57 -10.56 2.48 -176.52 -0.44 -11.00 16 10 C 0.22 4.76 4.75 -5.20 -0.02 4.74 16 11 C -0.52 -12.85 8.41 -34.44 -0.29 -13.14 16 12 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 13 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 14 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 15 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.13 1.92 5.34 -4.04 -0.02 1.90 16 20 C -0.05 -0.57 6.01 -29.52 -0.18 -0.74 16 21 C 0.22 3.00 15.43 -20.77 -0.32 2.68 16 22 N -0.45 -7.16 18.53 42.14 0.78 -6.38 16 23 O -0.20 -3.67 10.34 -22.95 -0.24 -3.91 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.19 2.86 8.06 -52.49 -0.42 2.44 16 28 H 0.04 0.81 8.02 -51.93 -0.42 0.39 16 29 H 0.08 1.93 5.30 -51.93 -0.28 1.66 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 32 H 0.09 1.30 7.44 -51.93 -0.39 0.92 16 33 H 0.11 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -30.47 314.83 -3.55 -34.02 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -3.58 Total: -2.37 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -0.02 Total: 14.49 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 1.00 Total: -47.16 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.68 Total: -19.21 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.47 -3.55 -34.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195795436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.233 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds