Wall clock time and date at job start Tue Mar 31 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35406 * 116.99716 * 2 1 4 4 C 1.36286 * 126.46105 * 179.97438 * 3 2 1 5 5 N 1.33143 * 107.78587 * 179.97438 * 4 3 2 6 6 C 1.31440 * 108.83690 * 0.02562 * 5 4 3 7 7 C 1.46922 * 125.64603 * 180.02562 * 6 5 4 8 8 O 1.21671 * 120.00218 * 173.77808 * 7 6 5 9 9 N 1.34779 * 120.00050 * 353.77731 * 7 6 5 10 10 C 1.46496 * 120.00217 * 4.24995 * 9 7 6 11 11 C 1.50697 * 109.47122 * 83.59454 * 10 9 7 12 12 H 1.08005 * 119.99615 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00471 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99577 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00440 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46880 * 59.99966 * 15 13 11 17 17 H 1.48497 * 109.47408 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47194 * 299.99968 * 15 13 11 19 19 C 1.46502 * 120.00022 * 184.25536 * 9 7 6 20 20 C 1.52993 * 109.47551 * 87.40824 * 19 9 7 21 21 C 1.47205 * 109.47649 * 180.02562 * 20 19 9 22 22 N 9.03388 * 122.02181 * 193.93102 * 3 1 2 23 23 O 1.34386 * 126.47005 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47332 * 299.99995 * 1 2 3 25 25 H 1.09002 * 109.47377 * 59.99681 * 1 2 3 26 26 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 27 27 H 1.08000 * 126.10725 * 359.72255 * 4 3 2 28 28 H 1.08996 * 109.47234 * 203.59909 * 10 9 7 29 29 H 1.09005 * 109.47152 * 323.59633 * 10 9 7 30 30 H 0.97001 * 119.99649 * 179.97438 * 14 13 11 31 31 H 1.08994 * 109.47260 * 207.41412 * 19 9 7 32 32 H 1.09004 * 109.46850 * 327.41052 * 19 9 7 33 33 H 1.09007 * 109.47213 * 300.00378 * 20 19 9 34 34 H 1.08996 * 109.47155 * 59.99666 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 6 3.3880 1.4306 0.0005 5 7 3.5807 2.7480 -0.0003 6 6 2.4112 3.3480 -0.0006 7 6 2.1944 4.8011 -0.0020 8 8 1.0686 5.2481 -0.1165 9 7 3.2426 5.6390 0.1235 10 6 4.6060 5.1050 0.1676 11 6 5.1023 4.8779 -1.2370 12 1 4.4658 5.1087 -2.0785 13 6 6.3688 4.3755 -1.4480 14 7 7.1436 4.0940 -0.4233 15 14 6.9841 4.0946 -3.1892 16 1 6.9811 5.3822 -3.9290 17 1 8.3657 3.5521 -3.1445 18 1 6.0945 3.1257 -3.8784 19 6 3.0184 7.0838 0.2159 20 6 2.7885 7.4719 1.6778 21 6 2.5627 8.9235 1.7706 22 7 2.3893 10.0434 1.8440 23 8 1.4434 2.4088 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.1592 0.6746 0.0052 28 1 5.2588 5.8168 0.6730 29 1 4.6088 4.1602 0.7112 30 1 8.0345 3.7402 -0.5717 31 1 3.8914 7.6122 -0.1673 32 1 2.1424 7.3540 -0.3738 33 1 1.9154 6.9435 2.0610 34 1 3.6644 7.2016 2.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195795436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:59 Heat of formation + Delta-G solvation = -16.177559 kcal Electronic energy + Delta-G solvation = -21571.981017 eV Core-core repulsion = 18086.976247 eV Total energy + Delta-G solvation = -3485.004770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.46456 -40.79871 -39.65499 -37.92844 -37.03373 -35.84179 -34.56331 -32.75845 -30.81937 -28.96713 -28.33780 -25.89090 -24.99814 -23.97480 -23.31137 -20.95317 -19.63995 -18.89373 -18.44609 -18.39026 -17.95439 -17.61899 -16.49332 -16.40780 -16.31480 -15.99297 -15.68751 -15.56746 -14.76029 -14.39423 -14.26135 -14.12922 -13.66240 -13.60734 -13.39279 -13.12260 -12.93645 -12.72104 -12.68965 -12.59086 -12.39251 -12.08874 -11.81333 -11.62758 -11.33974 -11.03616 -10.29590 -9.65971 -9.29337 -7.99261 -6.04281 -0.09281 0.75866 1.30729 1.47629 1.50185 1.55020 1.67887 1.82025 1.91074 2.20700 2.49354 2.59581 3.08383 3.28593 3.36001 3.83389 4.04935 4.11304 4.19335 4.22983 4.29698 4.56151 4.58394 4.72620 4.84666 4.96221 5.04683 5.11435 5.57991 5.70870 5.87897 5.92499 6.30501 6.34914 6.57101 6.60140 7.00120 7.09595 7.60391 9.08016 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.007725 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.997256 B = 3623.546891 C = 5897.761273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.251 6.251 3 C 0.176 3.824 4 C -0.074 4.074 5 N -0.360 5.360 6 C 0.096 3.904 7 C 0.617 3.383 8 O -0.569 6.569 9 N -0.562 5.562 10 C 0.232 3.768 11 C -0.517 4.517 12 H 0.039 0.961 13 C 0.037 3.963 14 N -0.910 5.910 15 Si 0.933 3.067 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.123 3.877 20 C -0.032 4.032 21 C 0.247 3.753 22 N -0.488 5.488 23 O -0.207 6.207 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.148 0.852 27 H 0.212 0.788 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.261 0.739 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 -7.295 3.629 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.164 6.164 3 C 0.075 3.925 4 C -0.219 4.219 5 N -0.092 5.092 6 C -0.107 4.107 7 C 0.403 3.597 8 O -0.449 6.449 9 N -0.292 5.292 10 C 0.112 3.888 11 C -0.556 4.556 12 H 0.057 0.943 13 C -0.163 4.163 14 N -0.550 5.550 15 Si 0.761 3.239 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.001 4.001 20 C -0.073 4.073 21 C -0.070 4.070 22 N -0.166 5.166 23 O -0.096 6.096 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.166 0.834 27 H 0.229 0.771 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.464 -5.241 3.731 11.444 hybrid contribution -0.241 -1.134 -1.199 1.668 sum -9.706 -6.375 2.532 11.885 Atomic orbital electron populations 1.23565 0.74539 1.07324 1.02992 1.86453 1.25202 1.16063 1.88719 1.22203 0.90957 0.78728 1.00562 1.23199 0.92289 0.93633 1.12826 1.71108 1.23443 1.05681 1.08958 1.24694 0.80142 0.92056 1.13772 1.15864 0.84750 0.81264 0.77797 1.90783 1.23489 1.77060 1.53588 1.47832 1.07768 1.05928 1.67657 1.19870 0.75095 0.96654 0.97156 1.21327 0.99130 1.42561 0.92578 0.94291 1.25216 0.96926 0.95337 0.98803 1.69964 1.09266 1.45008 1.30719 0.86019 0.77291 0.78183 0.82437 1.20239 1.20987 1.20962 1.21416 1.04252 0.78999 0.95388 1.19707 1.07075 0.81362 0.99165 1.29084 0.91316 0.94835 0.91769 1.81203 1.11237 1.14140 1.10041 1.84347 1.38841 1.15267 1.71134 0.91386 0.91899 0.83419 0.77130 0.94579 0.90802 0.92955 0.88061 0.89679 0.85945 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.78 113.37 1.22 1.37 16 2 O -0.25 -5.97 10.55 -64.92 -0.69 -6.65 16 3 C 0.18 5.40 7.95 67.36 0.54 5.94 16 4 C -0.07 -2.53 11.92 84.04 1.00 -1.53 16 5 N -0.36 -14.71 6.94 -304.56 -2.12 -16.82 16 6 C 0.10 3.78 7.78 87.03 0.68 4.46 16 7 C 0.62 24.29 7.58 86.52 0.66 24.95 16 8 O -0.57 -23.31 16.70 1.14 0.02 -23.29 16 9 N -0.56 -20.71 2.48 -830.62 -2.06 -22.77 16 10 C 0.23 10.05 4.75 85.63 0.41 10.45 16 11 C -0.52 -25.64 8.41 25.60 0.22 -25.43 16 12 H 0.04 2.01 7.81 -2.91 -0.02 1.99 16 13 C 0.04 1.91 5.46 84.65 0.46 2.37 16 14 N -0.91 -48.12 13.29 21.45 0.28 -47.83 16 15 Si 0.93 41.74 29.54 68.60 2.03 43.77 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 C 0.12 3.56 5.34 86.38 0.46 4.03 16 20 C -0.03 -0.72 6.01 28.79 0.17 -0.54 16 21 C 0.25 6.36 15.43 89.45 1.38 7.74 16 22 N -0.49 -15.19 18.53 20.00 0.37 -14.82 16 23 O -0.21 -7.27 10.34 16.86 0.17 -7.10 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.21 6.06 8.06 -2.91 -0.02 6.03 16 28 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 29 H 0.07 3.43 5.30 -2.38 -0.01 3.42 16 30 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.10 2.87 8.05 -2.39 -0.02 2.85 16 32 H 0.08 2.50 7.44 -2.38 -0.02 2.49 16 33 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -64.33 314.83 6.35 -57.98 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.14 Total: 3.74 kcal Atomic # 6 Polarization: 26.61 SS G_CDS: 7.19 Total: 33.80 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -3.52 Total: -102.25 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.49 Total: -37.04 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -64.33 6.35 -57.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195795436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.800 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds