Wall clock time and date at job start Tue Mar 31 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34717 * 116.99981 * 2 1 4 4 O 1.21472 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.47792 * 119.99895 * 180.27567 * 3 2 1 6 6 C 1.39546 * 119.64362 * 179.72201 * 5 3 2 7 7 C 1.38263 * 119.14162 * 179.97438 * 6 5 3 8 8 C 1.39385 * 118.43719 * 0.02562 * 7 6 5 9 9 N 1.39416 * 120.39151 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99899 * 32.88793 * 9 8 7 11 11 O 1.21582 * 120.00258 * 5.30294 * 10 9 8 12 12 N 1.34779 * 119.99905 * 185.31028 * 10 9 8 13 13 C 1.46496 * 120.00221 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99565 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00133 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00218 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99697 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47514 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46615 * 120.00340 * 18 16 14 21 21 H 1.48501 * 109.46976 * 239.99795 * 18 16 14 22 22 C 1.39407 * 119.21367 * 359.97438 * 8 7 6 23 23 N 1.31327 * 120.79106 * 359.72597 * 22 8 7 24 24 H 1.09005 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46978 * 299.99618 * 1 2 3 26 26 H 1.09002 * 109.47093 * 59.99948 * 1 2 3 27 27 H 1.08002 * 120.42516 * 359.97438 * 6 5 3 28 28 H 1.07998 * 120.77873 * 180.02562 * 7 6 5 29 29 H 0.96997 * 119.99678 * 212.88297 * 9 8 7 30 30 H 0.97003 * 119.99712 * 359.97438 * 12 10 9 31 31 H 1.09004 * 109.47252 * 299.99704 * 13 12 10 32 32 H 1.08999 * 109.47269 * 59.99582 * 13 12 10 33 33 H 0.96994 * 120.00412 * 179.97438 * 17 16 14 34 34 H 1.07993 * 119.60883 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5395 1.2777 -0.0062 6 6 4.1653 2.5249 -0.0120 7 6 5.5466 2.5852 -0.0172 8 6 6.2631 1.3896 -0.0169 9 7 7.6572 1.4028 -0.0226 10 6 8.3242 2.3910 0.6059 11 8 7.7151 3.2164 1.2584 12 7 9.6667 2.4642 0.5109 13 6 10.3918 3.5386 1.1936 14 6 11.8686 3.3942 0.9303 15 1 12.2308 2.5829 0.3163 16 6 12.7572 4.2978 1.4734 17 7 12.3162 5.2853 2.2216 18 14 14.5879 4.1183 1.1476 19 1 14.8231 2.9341 0.2831 20 1 15.0908 5.3371 0.4644 21 1 15.3049 3.9415 2.4360 22 6 5.5692 0.1805 -0.0109 23 7 4.2562 0.1590 -0.0002 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.5781 3.4314 -0.0125 28 1 6.0583 3.5363 -0.0214 29 1 8.1469 0.7008 -0.4788 30 1 10.1527 1.8055 -0.0095 31 1 10.0484 4.5033 0.8199 32 1 10.2066 3.4776 2.2660 33 1 12.9414 5.9208 2.6039 34 1 6.1180 -0.7496 -0.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219704494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:13 Heat of formation + Delta-G solvation = -73.330870 kcal Electronic energy + Delta-G solvation = -20259.669248 eV Core-core repulsion = 16772.186125 eV Total energy + Delta-G solvation = -3487.483123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10627 -40.26063 -39.03561 -36.62129 -35.24491 -34.35458 -32.63275 -32.22186 -30.58713 -28.05735 -27.16737 -24.78424 -23.74981 -22.75021 -21.47435 -20.52469 -18.82414 -18.14147 -17.68614 -17.37255 -16.56325 -16.25583 -15.94926 -15.27354 -15.01486 -14.68875 -14.40724 -14.17900 -13.96238 -13.38088 -13.22230 -13.18509 -12.76044 -12.28135 -12.17913 -12.12109 -11.08752 -11.03839 -10.98157 -10.96070 -10.84960 -10.43104 -10.06568 -9.90437 -9.50670 -9.47903 -8.88598 -8.48256 -8.00829 -6.26462 -4.34185 0.38005 1.12893 2.24467 2.43401 2.82282 3.17680 3.25445 3.27939 3.42266 3.77757 4.03624 4.22897 4.53815 4.67972 4.71564 4.88108 4.88948 4.96103 5.06882 5.10280 5.27750 5.46034 5.73550 5.97507 6.10372 6.15325 6.64342 6.74938 7.18228 7.33117 7.36220 7.38055 7.63935 7.73886 7.85726 8.48780 8.67617 8.94354 9.32728 10.83608 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.063843 B = 0.002682 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.472096 B =10438.833191 C =10766.689943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.530 3.470 4 O -0.505 6.505 5 C 0.044 3.956 6 C -0.074 4.074 7 C -0.096 4.096 8 C 0.175 3.825 9 N -0.686 5.686 10 C 0.688 3.312 11 O -0.577 6.577 12 N -0.715 5.715 13 C 0.264 3.736 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.883 5.883 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.062 3.938 23 N -0.412 5.412 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.410 0.590 30 H 0.391 0.609 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.881 -11.513 -6.938 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.252 6.252 3 C 0.374 3.626 4 O -0.392 6.392 5 C -0.093 4.093 6 C -0.095 4.095 7 C -0.125 4.125 8 C 0.073 3.927 9 N -0.333 5.333 10 C 0.388 3.612 11 O -0.454 6.454 12 N -0.366 5.366 13 C 0.144 3.856 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.103 4.103 23 N -0.122 5.122 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.169 0.831 28 H 0.179 0.821 29 H 0.246 0.754 30 H 0.224 0.776 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.931 -10.996 -6.184 21.114 hybrid contribution 1.810 0.168 -0.502 1.886 sum -15.121 -10.828 -6.686 19.763 Atomic orbital electron populations 1.23320 0.76355 1.03807 1.02552 1.86688 1.22991 1.31948 1.83575 1.20736 0.87894 0.81596 0.72407 1.90853 1.66006 1.36149 1.46238 1.19779 0.90425 0.90218 1.08831 1.21972 0.94587 0.98034 0.94860 1.21753 0.92917 0.99522 0.98268 1.18935 0.83803 0.95070 0.94874 1.42796 1.03770 1.29727 1.57027 1.16194 0.83206 0.81479 0.80311 1.90923 1.67477 1.41840 1.45192 1.45836 1.03352 1.33466 1.53990 1.19127 0.89936 0.84034 0.92552 1.21214 0.90616 1.13342 1.33242 0.91740 1.24948 0.99636 0.94778 0.94611 1.69973 1.35261 1.14657 1.32161 0.86329 0.84058 0.78167 0.78159 1.19623 1.20738 1.20734 1.22611 0.89357 0.96550 1.01799 1.67514 1.07143 1.29863 1.07715 0.87933 0.91815 0.91855 0.83077 0.82094 0.75374 0.77625 0.95277 0.95313 0.92347 0.81550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.34 -4.04 10.38 -40.54 -0.42 -4.46 16 3 C 0.53 7.15 7.94 34.64 0.28 7.42 16 4 O -0.50 -7.45 16.10 -19.24 -0.31 -7.76 16 5 C 0.04 0.60 6.74 -83.03 -0.56 0.04 16 6 C -0.07 -0.96 9.62 -39.08 -0.38 -1.34 16 7 C -0.10 -1.36 8.74 -39.15 -0.34 -1.70 16 8 C 0.17 2.28 6.31 -83.55 -0.53 1.75 16 9 N -0.69 -8.80 5.34 -14.10 -0.08 -8.88 16 10 C 0.69 12.47 8.32 -86.92 -0.72 11.75 16 11 O -0.58 -12.77 14.03 5.29 0.07 -12.70 16 12 N -0.72 -13.58 5.55 -66.42 -0.37 -13.95 16 13 C 0.26 6.56 5.43 -5.20 -0.03 6.53 16 14 C -0.55 -14.02 9.28 -34.44 -0.32 -14.34 16 15 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.88 -25.12 13.29 55.43 0.74 -24.38 16 18 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.06 0.71 11.12 -17.33 -0.19 0.52 16 23 N -0.41 -5.43 10.10 -9.65 -0.10 -5.52 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.15 1.79 7.63 -52.49 -0.40 1.39 16 28 H 0.16 2.52 6.47 -52.49 -0.34 2.18 16 29 H 0.41 3.63 8.83 -40.82 -0.36 3.27 16 30 H 0.39 6.11 8.34 -40.82 -0.34 5.77 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -32.88 311.10 -6.13 -39.01 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.51 Total: 5.33 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -1.82 Total: 13.57 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.19 Total: -52.73 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.66 Total: -24.92 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.88 -6.13 -39.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219704494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.323 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds