Wall clock time and date at job start Tue Mar 31 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34717 * 116.99981 * 2 1 4 4 O 1.21472 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.47792 * 119.99895 * 180.27567 * 3 2 1 6 6 C 1.39546 * 119.64362 * 179.72201 * 5 3 2 7 7 C 1.38263 * 119.14162 * 179.97438 * 6 5 3 8 8 C 1.39385 * 118.43719 * 0.02562 * 7 6 5 9 9 N 1.39416 * 120.39151 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99899 * 32.88793 * 9 8 7 11 11 O 1.21582 * 120.00258 * 5.30294 * 10 9 8 12 12 N 1.34779 * 119.99905 * 185.31028 * 10 9 8 13 13 C 1.46496 * 120.00221 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99565 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00133 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00218 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99697 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47514 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46615 * 120.00340 * 18 16 14 21 21 H 1.48501 * 109.46976 * 239.99795 * 18 16 14 22 22 C 1.39407 * 119.21367 * 359.97438 * 8 7 6 23 23 N 1.31327 * 120.79106 * 359.72597 * 22 8 7 24 24 H 1.09005 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46978 * 299.99618 * 1 2 3 26 26 H 1.09002 * 109.47093 * 59.99948 * 1 2 3 27 27 H 1.08002 * 120.42516 * 359.97438 * 6 5 3 28 28 H 1.07998 * 120.77873 * 180.02562 * 7 6 5 29 29 H 0.96997 * 119.99678 * 212.88297 * 9 8 7 30 30 H 0.97003 * 119.99712 * 359.97438 * 12 10 9 31 31 H 1.09004 * 109.47252 * 299.99704 * 13 12 10 32 32 H 1.08999 * 109.47269 * 59.99582 * 13 12 10 33 33 H 0.96994 * 120.00412 * 179.97438 * 17 16 14 34 34 H 1.07993 * 119.60883 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5395 1.2777 -0.0062 6 6 4.1653 2.5249 -0.0120 7 6 5.5466 2.5852 -0.0172 8 6 6.2631 1.3896 -0.0169 9 7 7.6572 1.4028 -0.0226 10 6 8.3242 2.3910 0.6059 11 8 7.7151 3.2164 1.2584 12 7 9.6667 2.4642 0.5109 13 6 10.3918 3.5386 1.1936 14 6 11.8686 3.3942 0.9303 15 1 12.2308 2.5829 0.3163 16 6 12.7572 4.2978 1.4734 17 7 12.3162 5.2853 2.2216 18 14 14.5879 4.1183 1.1476 19 1 14.8231 2.9341 0.2831 20 1 15.0908 5.3371 0.4644 21 1 15.3049 3.9415 2.4360 22 6 5.5692 0.1805 -0.0109 23 7 4.2562 0.1590 -0.0002 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.5781 3.4314 -0.0125 28 1 6.0583 3.5363 -0.0214 29 1 8.1469 0.7008 -0.4788 30 1 10.1527 1.8055 -0.0095 31 1 10.0484 4.5033 0.8199 32 1 10.2066 3.4776 2.2660 33 1 12.9414 5.9208 2.6039 34 1 6.1180 -0.7496 -0.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219704494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:13 Heat of formation + Delta-G solvation = -97.917223 kcal Electronic energy + Delta-G solvation = -20260.735392 eV Core-core repulsion = 16772.186125 eV Total energy + Delta-G solvation = -3488.549268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21361 -41.41501 -40.26830 -37.60027 -36.64396 -36.01593 -34.45232 -33.35492 -31.74527 -29.35549 -28.48645 -25.98838 -24.85499 -24.42254 -22.63439 -21.91767 -20.17459 -19.34218 -18.88212 -18.39455 -17.98393 -17.49953 -17.14170 -16.79898 -16.53729 -15.98309 -15.77443 -15.26321 -14.94442 -14.91772 -14.38657 -14.24757 -14.06392 -13.97108 -13.72875 -12.99703 -12.87952 -12.77104 -12.22151 -12.18082 -11.96074 -11.82174 -11.55652 -11.44472 -10.96870 -10.82442 -10.67685 -10.01811 -9.39810 -8.28639 -6.44440 -0.69105 0.10162 1.17974 1.42876 1.46098 1.48520 1.58747 1.63121 2.02240 2.38915 2.68963 3.07288 3.07493 3.27880 3.66878 3.71035 3.84888 3.93909 4.30010 4.35190 4.52851 4.66138 4.75408 4.92614 4.96153 5.10469 5.18702 5.25927 5.43334 5.52905 5.58274 5.82179 6.05231 6.37383 6.66563 6.73176 7.07532 7.25101 7.49383 8.83501 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.063843 B = 0.002682 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.472096 B =10438.833191 C =10766.689943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C 0.531 3.469 4 O -0.525 6.525 5 C 0.037 3.963 6 C -0.074 4.074 7 C -0.110 4.110 8 C 0.164 3.836 9 N -0.660 5.660 10 C 0.692 3.308 11 O -0.621 6.621 12 N -0.709 5.709 13 C 0.283 3.717 14 C -0.553 4.553 15 H 0.087 0.913 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.983 3.017 19 H -0.252 1.252 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.084 3.916 23 N -0.420 5.420 24 H 0.135 0.865 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.433 0.567 30 H 0.411 0.589 31 H -0.008 1.008 32 H -0.009 1.009 33 H 0.268 0.732 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 -14.185 -8.138 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.375 3.625 4 O -0.414 6.414 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.138 4.138 8 C 0.063 3.937 9 N -0.309 5.309 10 C 0.392 3.608 11 O -0.501 6.501 12 N -0.362 5.362 13 C 0.160 3.840 14 C -0.591 4.591 15 H 0.105 0.895 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.807 3.193 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.082 4.082 23 N -0.131 5.131 24 H 0.153 0.847 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.158 0.842 29 H 0.274 0.726 30 H 0.247 0.753 31 H 0.010 0.990 32 H 0.009 0.991 33 H 0.077 0.923 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -16.475 -13.762 -7.442 22.721 hybrid contribution 1.493 0.945 -0.137 1.772 sum -14.982 -12.818 -7.579 21.124 Atomic orbital electron populations 1.23672 0.74133 1.06074 1.02854 1.86666 1.25202 1.30969 1.83030 1.20737 0.87893 0.81835 0.72027 1.90839 1.66420 1.36839 1.47300 1.19909 0.90843 0.90403 1.08673 1.21982 0.94211 0.98491 0.94774 1.21666 0.93491 0.99404 0.99213 1.19068 0.83502 0.95452 0.95683 1.42298 1.03718 1.28788 1.56098 1.16237 0.82752 0.81807 0.80005 1.90908 1.68257 1.43848 1.47073 1.45328 1.03812 1.32858 1.54156 1.18518 0.90677 0.84227 0.90625 1.21627 0.90758 1.13712 1.32988 0.89512 1.26019 1.05009 0.94305 0.94214 1.70129 1.37177 1.15893 1.33657 0.85132 0.77434 0.78658 0.78111 1.17497 1.20722 1.20704 1.23174 0.88766 0.97168 0.99042 1.67607 1.07767 1.29506 1.08215 0.84722 0.91690 0.91438 0.82535 0.84182 0.72596 0.75313 0.98960 0.99107 0.92277 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -7.75 10.38 -56.26 -0.58 -8.33 16 3 C 0.53 13.93 7.94 70.35 0.56 14.49 16 4 O -0.52 -15.37 16.10 19.93 0.32 -15.05 16 5 C 0.04 0.98 6.74 41.83 0.28 1.26 16 6 C -0.07 -1.94 9.62 22.59 0.22 -1.72 16 7 C -0.11 -3.12 8.74 22.55 0.20 -2.92 16 8 C 0.16 4.02 6.31 38.49 0.24 4.26 16 9 N -0.66 -15.71 5.34 -316.78 -1.69 -17.40 16 10 C 0.69 24.96 8.32 179.05 1.49 26.45 16 11 O -0.62 -28.37 14.03 -3.98 -0.06 -28.43 16 12 N -0.71 -26.68 5.55 -482.31 -2.68 -29.36 16 13 C 0.28 14.46 5.43 85.63 0.46 14.92 16 14 C -0.55 -28.24 9.28 25.60 0.24 -28.00 16 15 H 0.09 3.95 7.60 -2.91 -0.02 3.93 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 18 Si 0.98 40.61 29.54 68.60 2.03 42.64 16 19 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 22 C 0.08 1.67 11.12 85.05 0.95 2.62 16 23 N -0.42 -10.19 10.10 -184.46 -1.86 -12.05 16 24 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.16 3.83 7.63 -2.91 -0.02 3.80 16 28 H 0.14 4.62 6.47 -2.91 -0.02 4.60 16 29 H 0.43 6.24 8.83 -92.71 -0.82 5.42 16 30 H 0.41 12.06 8.34 -92.71 -0.77 11.29 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -73.41 311.10 1.63 -71.78 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.43 Total: 16.51 kcal Atomic # 6 Polarization: 27.31 SS G_CDS: 6.30 Total: 33.61 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -5.95 Total: -112.73 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.32 Total: -51.81 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -73.41 1.63 -71.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219704494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.137 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds