Wall clock time and date at job start Tue Mar 31 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99440 * 2 1 4 4 O 1.20823 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99594 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47131 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47738 * 180.02562 * 6 5 3 8 8 C 1.36880 * 119.99788 * 270.00528 * 7 6 5 9 9 H 1.07998 * 119.99945 * 140.27933 * 8 7 6 10 10 C 1.39041 * 119.99937 * 320.27888 * 8 7 6 11 11 N 1.31364 * 120.00079 * 160.99857 * 10 8 7 12 12 Si 1.86805 * 120.00349 * 340.99751 * 10 8 7 13 13 H 1.48500 * 109.47207 * 95.36783 * 12 10 8 14 14 H 1.48500 * 109.47322 * 215.36991 * 12 10 8 15 15 H 1.48500 * 109.46721 * 335.36715 * 12 10 8 16 16 C 1.34777 * 120.00106 * 89.99574 * 7 6 5 17 17 O 1.21590 * 119.99445 * 6.09269 * 16 7 6 18 18 C 1.47714 * 119.99962 * 186.08428 * 16 7 6 19 19 C 1.40018 * 120.94264 * 149.00588 * 18 16 7 20 20 N 1.32133 * 118.91437 * 179.70429 * 19 18 16 21 21 C 1.31882 * 120.97473 * 0.27009 * 20 19 18 22 22 N 1.31875 * 122.11094 * 0.02986 * 21 20 19 23 23 C 1.32134 * 120.97602 * 359.97264 * 22 21 20 24 24 H 1.09002 * 109.47754 * 60.00094 * 1 2 3 25 25 H 1.09007 * 109.46634 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47830 * 299.99418 * 1 2 3 27 27 H 1.09006 * 109.47036 * 60.00634 * 5 3 2 28 28 H 1.08999 * 109.47718 * 300.00113 * 5 3 2 29 29 H 1.09001 * 109.46707 * 59.99980 * 6 5 3 30 30 H 1.09003 * 109.47421 * 300.00829 * 6 5 3 31 31 H 0.97003 * 120.00015 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.54215 * 359.97438 * 19 18 16 33 33 H 1.07998 * 118.94438 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.54618 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 -0.0002 7 7 5.4629 2.8191 -0.0002 8 6 6.1463 2.8555 1.1852 9 1 7.0695 2.3056 1.2934 10 6 5.6521 3.6006 2.2500 11 7 6.0697 3.3576 3.4715 12 14 4.3941 4.9472 1.9436 13 1 3.0279 4.4066 2.1590 14 1 4.6349 6.0724 2.8822 15 1 4.5196 5.4330 0.5459 16 6 6.1359 2.8538 -1.1675 17 8 5.5280 2.9331 -2.2175 18 6 7.6119 2.7956 -1.1710 19 6 8.3065 2.2041 -2.2331 20 7 9.6271 2.1792 -2.1978 21 6 10.2887 2.6957 -1.1805 22 7 9.6747 3.2567 -0.1572 23 6 8.3560 3.3253 -0.1097 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 3.9563 0.7808 -0.8893 28 1 3.9557 0.7811 0.8908 29 1 3.6098 3.2369 0.8893 30 1 3.6105 3.2359 -0.8906 31 1 5.7246 3.8772 4.2145 32 1 7.7718 1.7791 -3.0697 33 1 11.3681 2.6578 -1.1857 34 1 7.8602 3.7867 0.7316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262001428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:35 Heat of formation + Delta-G solvation = -51.168267 kcal Electronic energy + Delta-G solvation = -21724.434185 eV Core-core repulsion = 18237.912104 eV Total energy + Delta-G solvation = -3486.522081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65598 -40.27024 -38.77074 -36.43892 -35.43932 -33.26782 -32.65879 -31.99161 -30.63711 -27.73174 -25.58105 -25.09645 -23.88258 -23.30367 -20.66808 -19.65127 -18.02358 -17.45734 -17.24726 -16.92430 -16.56144 -16.40938 -15.99267 -15.03286 -14.62682 -14.37847 -13.98336 -13.79397 -13.30089 -13.14983 -13.01063 -12.82844 -12.63351 -12.46143 -12.17676 -11.85414 -11.30120 -11.14590 -10.93320 -10.73138 -10.47744 -10.32976 -10.17833 -10.05259 -9.52051 -9.11709 -8.90689 -8.77121 -8.13997 -6.76267 -4.43906 1.07347 1.58047 2.40985 2.79816 2.96472 3.11617 3.18693 3.50134 3.90525 4.00939 4.32450 4.49662 4.59616 4.78990 5.01209 5.10566 5.16929 5.17060 5.36526 5.40524 5.52298 5.58343 5.63792 5.87759 5.90704 6.14564 6.35727 6.46601 6.53017 6.89110 7.02717 7.36893 7.71825 7.87030 7.92489 8.48442 8.58324 8.95865 9.28475 10.30078 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.006326 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.066337 B = 4425.380257 C = 5475.583136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.510 6.510 5 C -0.123 4.123 6 C 0.113 3.887 7 N -0.450 5.450 8 C -0.373 4.373 9 H 0.115 0.885 10 C 0.075 3.925 11 N -0.839 5.839 12 Si 0.871 3.129 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.256 1.256 16 C 0.530 3.470 17 O -0.584 6.584 18 C -0.207 4.207 19 C 0.180 3.820 20 N -0.537 5.537 21 C 0.286 3.714 22 N -0.531 5.531 23 C 0.188 3.812 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.282 0.718 32 H 0.168 0.832 33 H 0.189 0.811 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 -4.351 -3.842 6.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.162 4.162 6 C -0.010 4.010 7 N -0.169 5.169 8 C -0.499 4.499 9 H 0.132 0.868 10 C -0.136 4.136 11 N -0.471 5.471 12 Si 0.697 3.303 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.180 1.180 16 C 0.319 3.681 17 O -0.468 6.468 18 C -0.214 4.214 19 C 0.014 3.986 20 N -0.251 5.251 21 C -0.001 4.001 22 N -0.245 5.245 23 C 0.023 3.977 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.206 0.794 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.636 -4.006 -4.109 6.315 hybrid contribution -1.754 0.602 0.225 1.868 sum -4.390 -3.404 -3.884 6.778 Atomic orbital electron populations 1.23216 0.76939 1.03324 1.02446 1.86534 1.23045 1.33889 1.84380 1.23933 0.92231 0.81086 0.71683 1.90653 1.67355 1.36324 1.45425 1.21777 0.86385 1.01454 1.06569 1.21462 0.82539 0.93499 1.03501 1.43496 1.03984 1.63715 1.05731 1.19240 1.10605 1.32041 0.88030 0.86817 1.25354 0.97037 0.96699 0.94507 1.69704 1.41587 1.37233 0.98621 0.86976 0.81328 0.81988 0.79968 1.19200 1.20876 1.17995 1.17819 0.85965 0.80389 0.83937 1.90679 1.69397 1.55013 1.31725 1.21709 0.96654 1.04759 0.98328 1.23260 0.89424 0.90345 0.95621 1.68411 1.09119 1.19818 1.27726 1.25019 1.01116 0.89056 0.84936 1.68638 1.11617 1.17675 1.26550 1.25134 0.88080 0.88276 0.96180 0.92044 0.88357 0.92024 0.87485 0.86508 0.90396 0.89622 0.90753 0.81454 0.79422 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.37 10.57 -39.27 -0.41 -5.78 16 3 C 0.47 8.09 7.96 36.00 0.29 8.38 16 4 O -0.51 -10.07 15.73 -18.75 -0.29 -10.36 16 5 C -0.12 -2.16 6.14 -27.88 -0.17 -2.33 16 6 C 0.11 2.35 3.52 -4.04 -0.01 2.34 16 7 N -0.45 -9.81 2.14 -115.93 -0.25 -10.05 16 8 C -0.37 -8.53 6.76 -15.00 -0.10 -8.63 16 9 H 0.11 2.72 6.03 -52.49 -0.32 2.41 16 10 C 0.08 1.78 5.35 -17.45 -0.09 1.69 16 11 N -0.84 -20.83 13.95 55.50 0.77 -20.06 16 12 Si 0.87 19.21 24.91 -169.99 -4.23 14.98 16 13 H -0.27 -5.90 6.72 56.52 0.38 -5.52 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.53 11.46 7.44 -12.39 -0.09 11.36 16 17 O -0.58 -13.50 16.37 5.29 0.09 -13.41 16 18 C -0.21 -4.08 5.60 -104.69 -0.59 -4.67 16 19 C 0.18 3.18 10.90 -16.76 -0.18 2.99 16 20 N -0.54 -9.07 10.42 -14.23 -0.15 -9.21 16 21 C 0.29 4.59 12.27 -92.01 -1.13 3.46 16 22 N -0.53 -9.74 10.42 -14.22 -0.15 -9.89 16 23 C 0.19 3.70 9.01 -16.75 -0.15 3.55 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 29 H 0.08 1.71 3.26 -51.93 -0.17 1.54 16 30 H 0.09 1.84 7.30 -51.93 -0.38 1.46 16 31 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.17 2.66 8.01 -52.49 -0.42 2.24 16 33 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.21 4.43 5.25 -52.48 -0.28 4.15 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -28.23 297.87 -4.56 -32.79 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.25 Total: 6.92 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: -1.17 Total: 19.60 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.23 Total: -49.22 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.62 Total: -29.55 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.23 Total: 14.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.23 -4.56 -32.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262001428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.379 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds