Wall clock time and date at job start Tue Mar 31 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99440 * 2 1 4 4 O 1.20823 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99594 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47131 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47738 * 180.02562 * 6 5 3 8 8 C 1.36880 * 119.99788 * 270.00528 * 7 6 5 9 9 H 1.07998 * 119.99945 * 140.27933 * 8 7 6 10 10 C 1.39041 * 119.99937 * 320.27888 * 8 7 6 11 11 N 1.31364 * 120.00079 * 160.99857 * 10 8 7 12 12 Si 1.86805 * 120.00349 * 340.99751 * 10 8 7 13 13 H 1.48500 * 109.47207 * 95.36783 * 12 10 8 14 14 H 1.48500 * 109.47322 * 215.36991 * 12 10 8 15 15 H 1.48500 * 109.46721 * 335.36715 * 12 10 8 16 16 C 1.34777 * 120.00106 * 89.99574 * 7 6 5 17 17 O 1.21590 * 119.99445 * 6.09269 * 16 7 6 18 18 C 1.47714 * 119.99962 * 186.08428 * 16 7 6 19 19 C 1.40018 * 120.94264 * 149.00588 * 18 16 7 20 20 N 1.32133 * 118.91437 * 179.70429 * 19 18 16 21 21 C 1.31882 * 120.97473 * 0.27009 * 20 19 18 22 22 N 1.31875 * 122.11094 * 0.02986 * 21 20 19 23 23 C 1.32134 * 120.97602 * 359.97264 * 22 21 20 24 24 H 1.09002 * 109.47754 * 60.00094 * 1 2 3 25 25 H 1.09007 * 109.46634 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47830 * 299.99418 * 1 2 3 27 27 H 1.09006 * 109.47036 * 60.00634 * 5 3 2 28 28 H 1.08999 * 109.47718 * 300.00113 * 5 3 2 29 29 H 1.09001 * 109.46707 * 59.99980 * 6 5 3 30 30 H 1.09003 * 109.47421 * 300.00829 * 6 5 3 31 31 H 0.97003 * 120.00015 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.54215 * 359.97438 * 19 18 16 33 33 H 1.07998 * 118.94438 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.54618 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 -0.0002 7 7 5.4629 2.8191 -0.0002 8 6 6.1463 2.8555 1.1852 9 1 7.0695 2.3056 1.2934 10 6 5.6521 3.6006 2.2500 11 7 6.0697 3.3576 3.4715 12 14 4.3941 4.9472 1.9436 13 1 3.0279 4.4066 2.1590 14 1 4.6349 6.0724 2.8822 15 1 4.5196 5.4330 0.5459 16 6 6.1359 2.8538 -1.1675 17 8 5.5280 2.9331 -2.2175 18 6 7.6119 2.7956 -1.1710 19 6 8.3065 2.2041 -2.2331 20 7 9.6271 2.1792 -2.1978 21 6 10.2887 2.6957 -1.1805 22 7 9.6747 3.2567 -0.1572 23 6 8.3560 3.3253 -0.1097 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 3.9563 0.7808 -0.8893 28 1 3.9557 0.7811 0.8908 29 1 3.6098 3.2369 0.8893 30 1 3.6105 3.2359 -0.8906 31 1 5.7246 3.8772 4.2145 32 1 7.7718 1.7791 -3.0697 33 1 11.3681 2.6578 -1.1857 34 1 7.8602 3.7867 0.7316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262001428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:34 Heat of formation + Delta-G solvation = -68.666376 kcal Electronic energy + Delta-G solvation = -21725.192960 eV Core-core repulsion = 18237.912104 eV Total energy + Delta-G solvation = -3487.280856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14219 -41.60447 -40.39508 -37.77191 -37.14216 -34.70328 -34.36732 -33.58670 -32.12263 -28.81543 -27.32285 -26.53713 -25.37470 -24.77106 -22.01289 -21.36430 -19.66473 -18.91558 -18.71759 -18.31790 -18.02105 -17.69962 -17.46579 -16.68464 -16.29781 -15.93641 -15.37852 -15.31066 -14.71822 -14.53455 -14.50906 -14.35460 -14.20955 -14.02815 -13.62354 -13.05453 -12.98100 -12.75796 -12.49959 -12.15338 -11.89294 -11.80638 -11.71462 -11.65742 -11.26111 -10.72697 -10.53902 -10.20429 -9.91292 -8.61030 -6.27669 -0.36253 0.12115 1.04907 1.18195 1.31117 1.38735 1.52336 1.87062 2.09788 2.41807 2.73993 2.94948 3.24218 3.35796 3.64737 3.70407 3.78873 3.97835 4.03199 4.17271 4.28448 4.30019 4.38251 4.54254 4.61369 4.67072 4.79365 5.01819 5.24947 5.25816 5.46296 5.89153 5.95393 6.07718 6.60687 6.77730 7.08862 7.18809 7.53285 8.49054 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.006326 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.066337 B = 4425.380257 C = 5475.583136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.539 6.539 5 C -0.116 4.116 6 C 0.111 3.889 7 N -0.458 5.458 8 C -0.357 4.357 9 H 0.103 0.897 10 C 0.053 3.947 11 N -0.871 5.871 12 Si 0.907 3.093 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.268 1.268 16 C 0.532 3.468 17 O -0.600 6.600 18 C -0.229 4.229 19 C 0.192 3.808 20 N -0.535 5.535 21 C 0.297 3.703 22 N -0.544 5.544 23 C 0.187 3.813 24 H 0.063 0.937 25 H 0.137 0.863 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.285 0.715 32 H 0.186 0.814 33 H 0.234 0.766 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -5.397 -4.741 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.154 4.154 6 C -0.012 4.012 7 N -0.177 5.177 8 C -0.484 4.484 9 H 0.121 0.879 10 C -0.156 4.156 11 N -0.505 5.505 12 Si 0.734 3.266 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.193 1.193 16 C 0.322 3.678 17 O -0.486 6.486 18 C -0.236 4.236 19 C 0.025 3.975 20 N -0.249 5.249 21 C 0.011 3.989 22 N -0.258 5.258 23 C 0.022 3.978 24 H 0.082 0.918 25 H 0.155 0.845 26 H 0.079 0.921 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.250 0.750 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.146 -5.068 -5.002 7.437 hybrid contribution -1.847 0.865 0.402 2.078 sum -3.992 -4.203 -4.601 7.401 Atomic orbital electron populations 1.23608 0.74563 1.05962 1.02582 1.86509 1.25281 1.32168 1.83645 1.23750 0.92017 0.81398 0.71025 1.90643 1.67903 1.37420 1.46997 1.21619 0.87107 0.99248 1.07473 1.21408 0.81916 0.95575 1.02274 1.43545 1.04395 1.64202 1.05523 1.19078 1.10105 1.31103 0.88067 0.87943 1.25619 0.97914 0.97560 0.94457 1.69727 1.43146 1.38480 0.99152 0.86423 0.80198 0.80947 0.79020 1.19553 1.20461 1.19258 1.18095 0.86826 0.79407 0.83475 1.90658 1.70097 1.55709 1.32149 1.21588 0.95503 1.06955 0.99554 1.23541 0.89812 0.89018 0.95098 1.68559 1.08522 1.19911 1.27892 1.25909 1.02871 0.86600 0.83527 1.68671 1.10802 1.18598 1.27711 1.24770 0.88892 0.88492 0.95666 0.91801 0.84489 0.92094 0.86168 0.85939 0.91685 0.90678 0.90445 0.79737 0.75046 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -10.07 10.57 -51.46 -0.54 -10.61 16 3 C 0.47 16.04 7.96 71.23 0.57 16.61 16 4 O -0.54 -21.19 15.73 21.97 0.35 -20.84 16 5 C -0.12 -4.00 6.14 29.85 0.18 -3.82 16 6 C 0.11 4.64 3.52 86.38 0.30 4.95 16 7 N -0.46 -19.99 2.14 -638.95 -1.37 -21.36 16 8 C -0.36 -16.46 6.76 84.10 0.57 -15.89 16 9 H 0.10 4.97 6.03 -2.91 -0.02 4.95 16 10 C 0.05 2.53 5.35 84.96 0.45 2.98 16 11 N -0.87 -43.65 13.95 21.68 0.30 -43.35 16 12 Si 0.91 40.06 24.91 68.60 1.71 41.77 16 13 H -0.27 -11.94 6.72 99.48 0.67 -11.27 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 16 C 0.53 22.87 7.44 86.75 0.65 23.52 16 17 O -0.60 -27.50 16.37 -4.00 -0.07 -27.56 16 18 C -0.23 -8.82 5.60 -19.91 -0.11 -8.93 16 19 C 0.19 6.40 10.90 85.08 0.93 7.32 16 20 N -0.54 -16.53 10.42 -198.92 -2.07 -18.60 16 21 C 0.30 8.63 12.27 180.83 2.22 10.84 16 22 N -0.54 -19.06 10.42 -198.91 -2.07 -21.13 16 23 C 0.19 7.26 9.01 85.08 0.77 8.03 16 24 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 25 H 0.14 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 27 H 0.12 3.81 8.14 -2.38 -0.02 3.79 16 28 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 29 H 0.07 2.88 3.26 -2.39 -0.01 2.87 16 30 H 0.07 3.26 7.30 -2.39 -0.02 3.25 16 31 H 0.29 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.19 5.44 8.01 -2.91 -0.02 5.41 16 33 H 0.23 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.19 8.19 5.25 -2.91 -0.02 8.17 16 Total: -1.00 -59.67 297.87 5.06 -54.61 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.11 Total: 19.75 kcal Atomic # 6 Polarization: 39.61 SS G_CDS: 7.72 Total: 47.33 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -5.21 Total: -104.44 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.26 Total: -59.02 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.71 Total: 41.77 kcal Total: -59.67 5.06 -54.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262001428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.056 kcal (2) G-P(sol) polarization free energy of solvation -59.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds