Wall clock time and date at job start Tue Mar 31 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35515 * 116.99801 * 2 1 4 4 C 1.39636 * 120.48890 * 180.02562 * 3 2 1 5 5 C 1.39151 * 118.20585 * 179.97438 * 4 3 2 6 6 C 1.48448 * 120.51784 * 179.97438 * 5 4 3 7 7 O 1.21472 * 120.00202 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99674 * 179.97438 * 6 5 4 9 9 C 1.47062 * 136.05967 * 359.62855 * 8 6 5 10 10 C 1.53239 * 88.08360 * 207.20303 * 9 8 6 11 11 O 1.42900 * 114.19974 * 87.72495 * 10 9 8 12 12 C 1.50698 * 114.32641 * 220.47129 * 10 9 8 13 13 H 1.07996 * 120.00742 * 93.75565 * 12 10 9 14 14 C 1.37882 * 119.99752 * 273.75702 * 12 10 9 15 15 N 1.31511 * 120.00078 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00059 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46980 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47031 * 119.99670 * 16 14 12 19 19 H 1.48497 * 109.47155 * 239.99994 * 16 14 12 20 20 C 1.47065 * 136.05432 * 179.97438 * 8 6 5 21 21 N 1.33283 * 118.96067 * 359.97438 * 5 4 3 22 22 C 1.31526 * 120.89167 * 0.02562 * 21 5 4 23 23 N 1.31891 * 121.98088 * 359.73338 * 22 21 5 24 24 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99667 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99691 * 1 2 3 27 27 H 1.07999 * 120.89933 * 359.97438 * 4 3 2 28 28 H 1.09003 * 113.46590 * 321.93258 * 9 8 6 29 29 H 1.08995 * 113.47291 * 92.37655 * 9 8 6 30 30 H 0.96707 * 113.99960 * 86.30355 * 11 10 9 31 31 H 0.97006 * 120.00632 * 180.02562 * 15 14 12 32 32 H 1.09000 * 113.46949 * 267.62363 * 20 8 6 33 33 H 1.09003 * 113.46798 * 38.00961 * 20 8 6 34 34 H 1.07993 * 119.00963 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4380 1.2925 -0.0005 5 6 4.0198 2.5565 -0.0011 6 6 5.4966 2.7066 -0.0011 7 8 6.2073 1.7215 -0.0002 8 7 6.0490 3.9360 -0.0021 9 6 5.5521 5.3201 -0.0100 10 6 6.8557 5.7297 -0.7038 11 8 6.8166 5.6318 -2.1289 12 6 7.4391 7.0291 -0.2117 13 1 8.1838 7.0250 0.5704 14 6 7.0220 8.2234 -0.7601 15 7 6.1155 8.2286 -1.7128 16 14 7.7457 9.8342 -0.1508 17 1 8.7401 9.5576 0.9170 18 1 8.4121 10.5351 -1.2776 19 1 6.6606 10.6903 0.3924 20 6 7.4139 4.4836 -0.0020 21 7 3.2303 3.6304 -0.0016 22 6 1.9209 3.5058 -0.0010 23 7 1.3314 2.3260 -0.0052 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 4.0480 0.4013 -0.0005 28 1 4.6683 5.4605 -0.6323 29 1 5.4385 5.7463 0.9868 30 1 6.4644 6.4183 -2.5676 31 1 5.8223 9.0688 -2.0990 32 1 7.8009 4.6848 0.9969 33 1 8.1104 3.9134 -0.6168 34 1 1.3101 4.3965 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262337796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:07 Heat of formation + Delta-G solvation = -20.560980 kcal Electronic energy + Delta-G solvation = -21411.640236 eV Core-core repulsion = 17926.445387 eV Total energy + Delta-G solvation = -3485.194849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32448 -39.58856 -38.54448 -37.41382 -34.06129 -33.31956 -32.17162 -31.83584 -28.98599 -27.77813 -25.83064 -25.06449 -24.27267 -24.01496 -20.74581 -19.26099 -18.39220 -17.80996 -17.15030 -16.40505 -15.87474 -15.82063 -15.43111 -15.10947 -14.97395 -14.79882 -14.25598 -14.14687 -13.97541 -13.14074 -12.68311 -12.46799 -12.26797 -12.01747 -11.81818 -11.54177 -11.08492 -11.00204 -10.83878 -10.47225 -10.36818 -10.26181 -10.10032 -9.44108 -9.26744 -9.25648 -8.77372 -8.34458 -7.89752 -6.38795 -4.48779 0.55983 0.98635 2.59828 3.06116 3.14651 3.23949 3.27309 3.35850 3.92851 3.93320 4.06677 4.19664 4.67320 4.84931 4.96156 4.97995 5.03313 5.19399 5.32979 5.53100 5.58133 5.88271 6.05818 6.15453 6.40806 6.57600 6.59817 6.68161 6.92204 6.95080 7.12998 7.64470 7.81725 7.92980 8.31889 8.53828 8.58751 9.22141 9.50811 10.68085 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.004211 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.660329 B = 6647.276285 C = 7217.997709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.300 6.300 3 C 0.358 3.642 4 C -0.190 4.190 5 C 0.176 3.824 6 C 0.583 3.417 7 O -0.550 6.550 8 N -0.606 5.606 9 C 0.086 3.914 10 C 0.235 3.765 11 O -0.572 6.572 12 C -0.532 4.532 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.106 3.894 21 N -0.502 5.502 22 C 0.332 3.668 23 N -0.570 5.570 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.163 0.837 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.394 0.606 31 H 0.273 0.727 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 -8.197 3.530 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.204 6.204 3 C 0.170 3.830 4 C -0.214 4.214 5 C 0.031 3.969 6 C 0.370 3.630 7 O -0.429 6.429 8 N -0.336 5.336 9 C -0.037 4.037 10 C 0.193 3.807 11 O -0.386 6.386 12 C -0.571 4.571 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.015 4.015 21 N -0.222 5.222 22 C 0.044 3.956 23 N -0.301 5.301 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.181 0.819 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.251 0.749 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.438 -8.880 3.514 14.147 hybrid contribution -0.009 0.767 0.208 0.795 sum -10.447 -8.112 3.723 13.740 Atomic orbital electron populations 1.22962 0.76585 1.03340 1.02843 1.86250 1.23414 1.23798 1.86937 1.19982 0.89180 0.85118 0.88698 1.21881 0.92556 1.00598 1.06408 1.21560 0.95247 0.88277 0.91828 1.17108 0.84818 0.82420 0.78703 1.90741 1.61473 1.37472 1.53185 1.49567 1.12060 1.05183 1.66775 1.24205 1.02510 0.75597 1.01378 1.19560 0.89864 0.90827 0.80401 1.86035 1.87514 1.46703 1.18298 1.21439 1.24492 0.89833 1.21297 0.90868 1.25072 0.93832 0.99868 0.94249 1.69274 1.30062 1.28062 1.26265 0.86262 0.79081 0.82192 0.78872 1.19435 1.20672 1.20661 1.23487 0.84057 0.93474 1.00498 1.68631 1.06131 1.32816 1.14614 1.24786 0.88356 0.93644 0.88854 1.68024 1.42063 0.99371 1.20659 0.88234 0.91940 0.91894 0.81899 0.90100 0.90101 0.74897 0.91643 0.89174 0.91199 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.41 101.05 1.05 1.37 16 2 O -0.30 -3.67 10.49 -18.24 -0.19 -3.86 16 3 C 0.36 5.07 7.54 -16.68 -0.13 4.94 16 4 C -0.19 -2.99 9.68 -38.72 -0.37 -3.37 16 5 C 0.18 3.17 6.79 -82.69 -0.56 2.61 16 6 C 0.58 12.28 8.08 -12.05 -0.10 12.18 16 7 O -0.55 -12.48 17.19 5.39 0.09 -12.39 16 8 N -0.61 -13.08 3.69 -186.28 -0.69 -13.77 16 9 C 0.09 1.87 6.93 -8.65 -0.06 1.81 16 10 C 0.24 5.63 1.57 -91.38 -0.14 5.48 16 11 O -0.57 -14.80 13.54 -35.23 -0.48 -15.28 16 12 C -0.53 -13.15 8.69 -34.44 -0.30 -13.45 16 13 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 15 N -0.90 -22.48 11.01 55.43 0.61 -21.87 16 16 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 C 0.11 2.30 8.04 -8.50 -0.07 2.24 16 21 N -0.50 -8.52 8.22 -11.20 -0.09 -8.61 16 22 C 0.33 4.55 12.27 -92.30 -1.13 3.42 16 23 N -0.57 -7.75 9.36 -14.65 -0.14 -7.88 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.16 2.44 7.73 -52.49 -0.41 2.03 16 28 H 0.08 1.82 7.20 -51.93 -0.37 1.45 16 29 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 30 H 0.39 10.31 6.32 45.56 0.29 10.59 16 31 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.21 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -28.88 303.90 -6.22 -35.10 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -2.99 Total: 10.92 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: -1.91 Total: 18.91 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.31 Total: -52.13 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.58 Total: -31.53 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.88 -6.22 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262337796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.541 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds