Wall clock time and date at job start Tue Mar 31 2020 00:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35515 * 116.99801 * 2 1 4 4 C 1.39636 * 120.48890 * 180.02562 * 3 2 1 5 5 C 1.39151 * 118.20585 * 179.97438 * 4 3 2 6 6 C 1.48448 * 120.51784 * 179.97438 * 5 4 3 7 7 O 1.21472 * 120.00202 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99674 * 179.97438 * 6 5 4 9 9 C 1.47062 * 136.05967 * 359.62855 * 8 6 5 10 10 C 1.53239 * 88.08360 * 207.20303 * 9 8 6 11 11 O 1.42900 * 114.19974 * 87.72495 * 10 9 8 12 12 C 1.50698 * 114.32641 * 220.47129 * 10 9 8 13 13 H 1.07996 * 120.00742 * 93.75565 * 12 10 9 14 14 C 1.37882 * 119.99752 * 273.75702 * 12 10 9 15 15 N 1.31511 * 120.00078 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00059 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46980 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47031 * 119.99670 * 16 14 12 19 19 H 1.48497 * 109.47155 * 239.99994 * 16 14 12 20 20 C 1.47065 * 136.05432 * 179.97438 * 8 6 5 21 21 N 1.33283 * 118.96067 * 359.97438 * 5 4 3 22 22 C 1.31526 * 120.89167 * 0.02562 * 21 5 4 23 23 N 1.31891 * 121.98088 * 359.73338 * 22 21 5 24 24 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99667 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99691 * 1 2 3 27 27 H 1.07999 * 120.89933 * 359.97438 * 4 3 2 28 28 H 1.09003 * 113.46590 * 321.93258 * 9 8 6 29 29 H 1.08995 * 113.47291 * 92.37655 * 9 8 6 30 30 H 0.96707 * 113.99960 * 86.30355 * 11 10 9 31 31 H 0.97006 * 120.00632 * 180.02562 * 15 14 12 32 32 H 1.09000 * 113.46949 * 267.62363 * 20 8 6 33 33 H 1.09003 * 113.46798 * 38.00961 * 20 8 6 34 34 H 1.07993 * 119.00963 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4380 1.2925 -0.0005 5 6 4.0198 2.5565 -0.0011 6 6 5.4966 2.7066 -0.0011 7 8 6.2073 1.7215 -0.0002 8 7 6.0490 3.9360 -0.0021 9 6 5.5521 5.3201 -0.0100 10 6 6.8557 5.7297 -0.7038 11 8 6.8166 5.6318 -2.1289 12 6 7.4391 7.0291 -0.2117 13 1 8.1838 7.0250 0.5704 14 6 7.0220 8.2234 -0.7601 15 7 6.1155 8.2286 -1.7128 16 14 7.7457 9.8342 -0.1508 17 1 8.7401 9.5576 0.9170 18 1 8.4121 10.5351 -1.2776 19 1 6.6606 10.6903 0.3924 20 6 7.4139 4.4836 -0.0020 21 7 3.2303 3.6304 -0.0016 22 6 1.9209 3.5058 -0.0010 23 7 1.3314 2.3260 -0.0052 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 4.0480 0.4013 -0.0005 28 1 4.6683 5.4605 -0.6323 29 1 5.4385 5.7463 0.9868 30 1 6.4644 6.4183 -2.5676 31 1 5.8223 9.0688 -2.0990 32 1 7.8009 4.6848 0.9969 33 1 8.1104 3.9134 -0.6168 34 1 1.3101 4.3965 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262337796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:06 Heat of formation + Delta-G solvation = -42.713249 kcal Electronic energy + Delta-G solvation = -21412.600831 eV Core-core repulsion = 17926.445387 eV Total energy + Delta-G solvation = -3486.155444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.51511 -41.20918 -39.67688 -39.06223 -35.92704 -34.54440 -34.08889 -32.99765 -30.69197 -28.68005 -27.50138 -26.81414 -25.43795 -25.35157 -22.29952 -20.79993 -19.58361 -19.49299 -18.77684 -17.44807 -17.39997 -17.25036 -16.86931 -16.63646 -16.51527 -16.00715 -15.85495 -15.35948 -15.20172 -14.85493 -14.45408 -14.14527 -13.75913 -13.37967 -12.99610 -12.78090 -12.75627 -12.70727 -12.20059 -12.13416 -11.99247 -11.75530 -11.54935 -11.12728 -10.74595 -10.61252 -10.37751 -10.13070 -9.65524 -8.23999 -6.40696 -0.72976 -0.14930 1.45139 1.49062 1.53909 1.57783 1.64282 1.94588 2.43482 2.65172 2.73150 2.92665 2.98204 3.41752 3.71261 3.74777 3.94256 4.18673 4.38508 4.39496 4.39939 4.46567 4.63186 4.69106 4.82592 4.86409 4.97861 5.16470 5.26994 5.53591 5.76660 5.91654 5.93468 6.62581 6.66265 6.73535 6.96504 7.32569 7.51152 8.82761 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.004211 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.660329 B = 6647.276285 C = 7217.997709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.366 3.634 4 C -0.191 4.191 5 C 0.157 3.843 6 C 0.579 3.421 7 O -0.574 6.574 8 N -0.611 5.611 9 C 0.104 3.896 10 C 0.215 3.785 11 O -0.587 6.587 12 C -0.550 4.550 13 H 0.077 0.923 14 C 0.032 3.968 15 N -0.916 5.916 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.277 1.277 20 C 0.108 3.892 21 N -0.526 5.526 22 C 0.337 3.663 23 N -0.560 5.560 24 H 0.131 0.869 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.165 0.835 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.389 0.611 31 H 0.276 0.724 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 -8.102 4.314 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.177 3.823 4 C -0.216 4.216 5 C 0.013 3.987 6 C 0.367 3.633 7 O -0.454 6.454 8 N -0.341 5.341 9 C -0.019 4.019 10 C 0.174 3.826 11 O -0.400 6.400 12 C -0.588 4.588 13 H 0.095 0.905 14 C -0.168 4.168 15 N -0.557 5.557 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.014 4.014 21 N -0.247 5.247 22 C 0.050 3.950 23 N -0.291 5.291 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.183 0.817 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.245 0.755 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.926 -8.808 4.306 15.439 hybrid contribution 0.337 0.641 -0.061 0.727 sum -11.589 -8.168 4.245 14.800 Atomic orbital electron populations 1.23313 0.74274 1.05629 1.03166 1.86265 1.25613 1.22632 1.86243 1.20011 0.88758 0.85967 0.87581 1.21871 0.93592 0.99772 1.06346 1.21127 0.93696 0.89616 0.94258 1.17596 0.86314 0.81721 0.77715 1.90707 1.62637 1.37955 1.54139 1.49580 1.11850 1.05414 1.67269 1.23933 1.01027 0.75667 1.01241 1.19835 0.91534 0.91695 0.79555 1.86021 1.87681 1.46557 1.19765 1.21663 1.24946 0.90473 1.21725 0.90520 1.25771 0.94060 1.02637 0.94344 1.69337 1.30689 1.28850 1.26841 0.85291 0.78357 0.78450 0.78204 1.19024 1.20895 1.20234 1.23507 0.84244 0.92442 1.01208 1.68575 1.07504 1.32730 1.15856 1.25497 0.87516 0.94851 0.87145 1.68159 1.41527 0.99197 1.20245 0.85089 0.91455 0.91651 0.81731 0.90990 0.89267 0.75452 0.91380 0.87050 0.92034 0.74250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.41 113.37 1.18 1.60 16 2 O -0.30 -6.77 10.49 -88.17 -0.93 -7.69 16 3 C 0.37 9.73 7.54 84.91 0.64 10.36 16 4 C -0.19 -5.90 9.68 22.83 0.22 -5.67 16 5 C 0.16 5.63 6.79 41.87 0.28 5.91 16 6 C 0.58 24.62 8.08 86.97 0.70 25.32 16 7 O -0.57 -26.45 17.19 -3.63 -0.06 -26.51 16 8 N -0.61 -26.57 3.69 -862.06 -3.18 -29.75 16 9 C 0.10 4.54 6.93 83.09 0.58 5.11 16 10 C 0.22 10.36 1.57 -11.29 -0.02 10.34 16 11 O -0.59 -30.97 13.54 -148.98 -2.02 -32.98 16 12 C -0.55 -27.04 8.69 25.60 0.22 -26.82 16 13 H 0.08 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.03 1.57 5.40 84.66 0.46 2.03 16 15 N -0.92 -45.88 11.01 21.45 0.24 -45.65 16 16 Si 0.97 38.74 29.54 68.60 2.03 40.77 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 20 C 0.11 4.69 8.04 83.18 0.67 5.36 16 21 N -0.53 -17.40 8.22 -189.36 -1.56 -18.96 16 22 C 0.34 8.57 12.27 180.94 2.22 10.79 16 23 N -0.56 -13.95 9.36 -313.02 -2.93 -16.88 16 24 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 26 H 0.06 0.90 8.12 -2.39 -0.02 0.89 16 27 H 0.17 4.91 7.73 -2.91 -0.02 4.88 16 28 H 0.07 3.26 7.20 -2.39 -0.02 3.24 16 29 H 0.09 3.71 8.10 -2.39 -0.02 3.69 16 30 H 0.39 20.82 6.32 -74.05 -0.47 20.36 16 31 H 0.28 13.03 8.31 -92.70 -0.77 12.26 16 32 H 0.11 4.30 8.10 -2.39 -0.02 4.28 16 33 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.24 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -61.23 303.90 -0.58 -61.81 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.68 Total: 31.51 kcal Atomic # 6 Polarization: 37.19 SS G_CDS: 7.15 Total: 44.34 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -7.43 Total: -111.24 kcal Atomic # 8 Polarization: -64.18 SS G_CDS: -3.00 Total: -67.19 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -61.23 -0.58 -61.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262337796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.095 kcal (2) G-P(sol) polarization free energy of solvation -61.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds