Wall clock time and date at job start Tue Mar 31 2020 00:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31916 * 119.03880 * 2 1 4 4 C 1.32168 * 121.04283 * 179.97438 * 3 2 1 5 5 C 1.38818 * 119.14448 * 359.97438 * 4 3 2 6 6 C 1.39521 * 118.25618 * 0.27842 * 5 4 3 7 7 C 1.48378 * 120.55271 * 179.70460 * 6 5 4 8 8 O 1.21400 * 119.99730 * 0.02562 * 7 6 5 9 9 O 1.34633 * 120.00471 * 180.02562 * 7 6 5 10 10 C 1.45199 * 117.00372 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47078 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00536 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99771 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00178 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47459 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00183 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00106 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99948 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46959 * 89.99819 * 19 17 15 21 21 H 1.48499 * 109.47050 * 209.99348 * 19 17 15 22 22 H 1.48495 * 109.47388 * 329.99718 * 19 17 15 23 23 N 1.31539 * 119.03783 * 179.97438 * 2 1 3 24 24 H 1.08992 * 109.47492 * 89.99803 * 1 2 3 25 25 H 1.08997 * 109.46581 * 210.00395 * 1 2 3 26 26 H 1.09005 * 109.46626 * 329.99350 * 1 2 3 27 27 H 1.07998 * 120.42618 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.86681 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47011 * 300.00269 * 10 9 7 30 30 H 1.09001 * 109.47039 * 59.99994 * 10 9 7 31 31 H 0.96996 * 119.99826 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.47010 * 300.00620 * 14 13 11 33 33 H 1.09007 * 109.46985 * 59.99764 * 14 13 11 34 34 H 0.97007 * 120.00052 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1995 0.0005 5 6 4.1863 0.0115 0.0016 6 6 3.4762 -1.1895 -0.0039 7 6 4.1922 -2.4890 -0.0096 8 8 5.4060 -2.5133 -0.0091 9 8 3.4959 -3.6413 -0.0154 10 6 4.2622 -4.8746 -0.0213 11 6 3.3205 -6.0511 -0.0266 12 8 2.1216 -5.8683 -0.0259 13 7 3.8107 -7.3066 -0.0331 14 6 2.8953 -8.4504 -0.0388 15 6 3.6906 -9.7303 -0.0462 16 1 4.7700 -9.6954 -0.0461 17 6 3.0402 -10.9460 -0.0519 18 7 3.7343 -12.0631 -0.0578 19 14 1.1732 -11.0065 -0.0512 20 1 0.6778 -11.0155 -1.4511 21 1 0.7181 -12.2379 0.6428 22 1 0.6395 -9.8143 0.6550 23 7 2.1456 -1.1500 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 3.9823 2.1494 0.0009 28 1 5.2663 0.0168 0.0016 29 1 4.8906 -4.9077 -0.9114 30 1 4.8903 -4.9164 0.8686 31 1 4.7696 -7.4528 -0.0341 32 1 2.2672 -8.4175 0.8514 33 1 2.2669 -8.4084 -0.9285 34 1 3.2768 -12.9184 -0.0621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318023418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:19 Heat of formation + Delta-G solvation = -65.091790 kcal Electronic energy + Delta-G solvation = -20237.685318 eV Core-core repulsion = 16750.559468 eV Total energy + Delta-G solvation = -3487.125850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.73210 -40.46860 -38.88222 -36.65945 -34.41380 -34.35572 -33.70946 -32.44519 -29.68606 -28.93252 -27.50613 -26.00868 -23.69294 -22.24972 -21.48215 -20.15531 -18.96585 -18.07121 -17.34894 -16.96114 -16.92888 -16.12055 -15.76211 -15.65502 -15.19372 -14.97600 -14.75083 -14.13536 -13.81269 -13.34338 -13.24416 -12.93306 -12.74342 -12.61114 -12.38705 -12.11960 -11.41439 -11.31769 -11.28056 -11.07165 -10.92450 -10.78124 -10.01294 -10.00815 -9.81302 -9.55480 -9.36499 -8.82793 -8.28360 -6.25167 -4.28334 -0.09033 0.44828 1.97205 2.03551 3.00475 3.24920 3.29110 3.30005 3.33254 3.40048 3.52843 3.77488 4.19159 4.30282 4.36210 4.49211 4.88009 4.90828 5.03905 5.07226 5.11119 5.17702 5.23861 5.37017 5.51204 5.86991 5.96516 6.35367 6.71957 6.99972 7.07024 7.26294 7.30651 7.56927 8.03119 8.39607 8.66518 8.78364 9.33920 10.86557 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.003059 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.511120 B = 9150.044726 C = 9982.803143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.318 3.682 3 N -0.501 5.501 4 C 0.155 3.845 5 C -0.173 4.173 6 C 0.155 3.845 7 C 0.522 3.478 8 O -0.489 6.489 9 O -0.301 6.301 10 C 0.046 3.954 11 C 0.502 3.498 12 O -0.531 6.531 13 N -0.699 5.699 14 C 0.222 3.778 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 N -0.465 5.465 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.182 0.818 28 H 0.165 0.835 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.399 0.601 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 26.159 0.142 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.216 5.216 4 C -0.013 4.013 5 C -0.196 4.196 6 C 0.008 3.992 7 C 0.363 3.637 8 O -0.376 6.376 9 O -0.213 6.213 10 C -0.032 4.032 11 C 0.285 3.715 12 O -0.408 6.408 13 N -0.350 5.350 14 C 0.101 3.899 15 C -0.584 4.584 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.184 1.184 23 N -0.182 5.182 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.199 0.801 28 H 0.182 0.818 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.233 0.767 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.230 25.930 0.148 25.960 hybrid contribution 0.829 -0.398 -0.042 0.921 sum -0.401 25.533 0.107 25.536 Atomic orbital electron populations 1.20660 0.84721 1.04765 1.04463 1.23443 0.98690 0.82506 0.90241 1.68248 1.10469 1.30538 1.12301 1.23405 0.89363 0.98527 0.90011 1.22965 1.03970 0.92529 1.00099 1.20439 0.90223 0.91469 0.97086 1.20709 0.85249 0.84339 0.73414 1.90873 1.13793 1.87796 1.45114 1.86720 1.39191 1.13263 1.82160 1.22977 0.93913 0.81138 1.05142 1.19843 0.89012 0.84025 0.78668 1.90728 1.15389 1.85350 1.49299 1.46055 1.11433 1.04880 1.72627 1.19559 0.90044 0.83205 0.97113 1.21059 0.95188 0.88476 1.53668 0.90122 1.24787 0.98779 0.95222 0.93776 1.69878 1.36072 0.97671 1.49163 0.86816 0.85430 0.78332 0.79137 1.19775 1.20839 1.18427 1.68388 1.08265 1.30828 1.10712 0.89099 0.88866 0.89263 0.80079 0.81755 0.87922 0.87930 0.76710 0.95390 0.95847 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.32 36.01 0.37 -0.30 16 2 C 0.32 3.41 7.64 -157.30 -1.20 2.20 16 3 N -0.50 -4.75 10.32 -10.73 -0.11 -4.86 16 4 C 0.16 1.10 11.31 -17.19 -0.19 0.91 16 5 C -0.17 -1.47 9.72 -38.89 -0.38 -1.84 16 6 C 0.15 1.87 6.79 -82.65 -0.56 1.31 16 7 C 0.52 7.18 7.97 34.91 0.28 7.46 16 8 O -0.49 -6.82 16.21 -19.19 -0.31 -7.13 16 9 O -0.30 -4.80 9.61 -46.99 -0.45 -5.25 16 10 C 0.05 0.66 5.95 36.00 0.21 0.87 16 11 C 0.50 9.56 7.91 -10.99 -0.09 9.47 16 12 O -0.53 -12.38 16.50 -14.10 -0.23 -12.61 16 13 N -0.70 -13.76 5.55 -61.47 -0.34 -14.10 16 14 C 0.22 5.37 4.50 -5.20 -0.02 5.35 16 15 C -0.55 -14.72 9.83 -34.45 -0.34 -15.06 16 16 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 19 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 N -0.47 -6.09 10.15 -7.34 -0.07 -6.16 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.18 0.53 8.06 -52.49 -0.42 0.10 16 28 H 0.16 1.04 7.74 -52.49 -0.41 0.64 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.40 6.70 8.32 -40.82 -0.34 6.36 16 32 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 33 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -34.98 313.65 -6.34 -41.31 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -3.63 Total: 0.49 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -2.02 Total: 12.46 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.25 Total: -50.52 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.00 Total: -25.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.98 -6.34 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318023418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.779 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds