Wall clock time and date at job start Tue Mar 31 2020 00:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31916 * 119.03880 * 2 1 4 4 C 1.32168 * 121.04283 * 179.97438 * 3 2 1 5 5 C 1.38818 * 119.14448 * 359.97438 * 4 3 2 6 6 C 1.39521 * 118.25618 * 0.27842 * 5 4 3 7 7 C 1.48378 * 120.55271 * 179.70460 * 6 5 4 8 8 O 1.21400 * 119.99730 * 0.02562 * 7 6 5 9 9 O 1.34633 * 120.00471 * 180.02562 * 7 6 5 10 10 C 1.45199 * 117.00372 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47078 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00536 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99771 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00178 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47459 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00183 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00106 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99948 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46959 * 89.99819 * 19 17 15 21 21 H 1.48499 * 109.47050 * 209.99348 * 19 17 15 22 22 H 1.48495 * 109.47388 * 329.99718 * 19 17 15 23 23 N 1.31539 * 119.03783 * 179.97438 * 2 1 3 24 24 H 1.08992 * 109.47492 * 89.99803 * 1 2 3 25 25 H 1.08997 * 109.46581 * 210.00395 * 1 2 3 26 26 H 1.09005 * 109.46626 * 329.99350 * 1 2 3 27 27 H 1.07998 * 120.42618 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.86681 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47011 * 300.00269 * 10 9 7 30 30 H 1.09001 * 109.47039 * 59.99994 * 10 9 7 31 31 H 0.96996 * 119.99826 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.47010 * 300.00620 * 14 13 11 33 33 H 1.09007 * 109.46985 * 59.99764 * 14 13 11 34 34 H 0.97007 * 120.00052 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1995 0.0005 5 6 4.1863 0.0115 0.0016 6 6 3.4762 -1.1895 -0.0039 7 6 4.1922 -2.4890 -0.0096 8 8 5.4060 -2.5133 -0.0091 9 8 3.4959 -3.6413 -0.0154 10 6 4.2622 -4.8746 -0.0213 11 6 3.3205 -6.0511 -0.0266 12 8 2.1216 -5.8683 -0.0259 13 7 3.8107 -7.3066 -0.0331 14 6 2.8953 -8.4504 -0.0388 15 6 3.6906 -9.7303 -0.0462 16 1 4.7700 -9.6954 -0.0461 17 6 3.0402 -10.9460 -0.0519 18 7 3.7343 -12.0631 -0.0578 19 14 1.1732 -11.0065 -0.0512 20 1 0.6778 -11.0155 -1.4511 21 1 0.7181 -12.2379 0.6428 22 1 0.6395 -9.8143 0.6550 23 7 2.1456 -1.1500 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 3.9823 2.1494 0.0009 28 1 5.2663 0.0168 0.0016 29 1 4.8906 -4.9077 -0.9114 30 1 4.8903 -4.9164 0.8686 31 1 4.7696 -7.4528 -0.0341 32 1 2.2672 -8.4175 0.8514 33 1 2.2669 -8.4084 -0.9285 34 1 3.2768 -12.9184 -0.0621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318023418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:18 Heat of formation + Delta-G solvation = -90.630333 kcal Electronic energy + Delta-G solvation = -20238.792752 eV Core-core repulsion = 16750.559468 eV Total energy + Delta-G solvation = -3488.233284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52704 -41.52449 -40.41071 -37.80246 -36.22604 -35.12850 -34.47687 -34.38293 -31.22947 -29.58161 -29.10608 -26.97548 -24.51803 -23.98944 -22.49518 -21.76812 -19.94322 -19.39462 -18.60820 -18.16846 -18.03265 -17.59378 -16.90086 -16.59525 -16.55002 -16.09958 -16.05106 -15.62113 -14.87809 -14.70523 -14.44920 -14.36514 -13.90197 -13.86432 -13.53416 -13.26616 -13.09828 -12.72139 -12.31261 -12.10283 -12.09549 -12.03295 -11.94350 -11.67801 -11.02092 -10.93134 -10.68899 -10.54696 -10.06085 -8.40841 -6.48342 -0.89110 -0.20082 0.93206 1.09620 1.33018 1.35945 1.47190 1.49580 2.23648 2.28095 2.55797 2.70552 2.94246 2.94602 3.39463 3.54073 3.62104 3.88823 3.97857 3.99575 4.31644 4.38781 4.68559 4.72716 4.76988 4.90886 4.96001 4.99224 5.22539 5.27027 5.38068 5.65127 6.04427 6.25975 6.51417 6.69476 6.83901 7.10578 7.26124 8.73652 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.003059 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.511120 B = 9150.044726 C = 9982.803143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.305 3.695 3 N -0.507 5.507 4 C 0.168 3.832 5 C -0.158 4.158 6 C 0.124 3.876 7 C 0.524 3.476 8 O -0.495 6.495 9 O -0.327 6.327 10 C 0.054 3.946 11 C 0.504 3.496 12 O -0.577 6.577 13 N -0.695 5.695 14 C 0.232 3.768 15 C -0.547 4.547 16 H 0.063 0.937 17 C 0.027 3.973 18 N -0.930 5.930 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.260 1.260 23 N -0.505 5.505 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.230 0.770 28 H 0.188 0.812 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.414 0.586 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 28.618 0.093 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 N -0.222 5.222 4 C -0.001 4.001 5 C -0.180 4.180 6 C -0.021 4.021 7 C 0.366 3.634 8 O -0.381 6.381 9 O -0.241 6.241 10 C -0.022 4.022 11 C 0.289 3.711 12 O -0.456 6.456 13 N -0.347 5.347 14 C 0.109 3.891 15 C -0.585 4.585 16 H 0.081 0.919 17 C -0.173 4.173 18 N -0.569 5.569 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.184 1.184 23 N -0.223 5.223 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.247 0.753 28 H 0.206 0.794 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.250 0.750 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.838 28.396 0.098 28.408 hybrid contribution 0.814 -1.053 -0.025 1.331 sum -0.023 27.343 0.073 27.343 Atomic orbital electron populations 1.20737 0.83410 1.05170 1.05154 1.23866 0.99719 0.82378 0.90210 1.68353 1.11704 1.29743 1.12423 1.24242 0.88593 0.99848 0.87403 1.23286 1.05035 0.91490 0.98184 1.20520 0.90504 0.91652 0.99444 1.21013 0.85313 0.84216 0.72827 1.90852 1.13812 1.87853 1.45622 1.86702 1.40465 1.14165 1.82733 1.22911 0.92382 0.79108 1.07808 1.20538 0.89054 0.84676 0.76797 1.90705 1.17724 1.86036 1.51181 1.45833 1.11708 1.04407 1.72756 1.19175 0.90155 0.83654 0.96129 1.21261 0.94720 0.89755 1.52791 0.91911 1.25579 1.03185 0.94990 0.93566 1.69977 1.37965 0.98373 1.50551 0.85878 0.80169 0.78496 0.79498 1.18970 1.19851 1.18392 1.68314 1.09121 1.32315 1.12527 0.88204 0.89726 0.87518 0.75344 0.79439 0.85128 0.85160 0.74961 0.96539 0.96647 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.32 71.24 0.73 -0.55 16 2 C 0.30 6.28 7.64 138.79 1.06 7.34 16 3 N -0.51 -8.50 10.32 -187.87 -1.94 -10.44 16 4 C 0.17 1.82 11.31 84.78 0.96 2.78 16 5 C -0.16 -2.26 9.72 22.72 0.22 -2.04 16 6 C 0.12 2.88 6.79 41.96 0.28 3.16 16 7 C 0.52 13.92 7.97 70.52 0.56 14.48 16 8 O -0.49 -12.88 16.21 20.16 0.33 -12.55 16 9 O -0.33 -10.28 9.61 -49.04 -0.47 -10.75 16 10 C 0.05 1.49 5.95 71.23 0.42 1.91 16 11 C 0.50 18.94 7.91 87.65 0.69 19.63 16 12 O -0.58 -27.15 16.50 15.76 0.26 -26.89 16 13 N -0.70 -27.01 5.55 -466.79 -2.59 -29.60 16 14 C 0.23 11.22 4.50 85.63 0.38 11.60 16 15 C -0.55 -29.73 9.83 25.60 0.25 -29.48 16 16 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 17 C 0.03 1.53 5.47 84.65 0.46 1.99 16 18 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 19 Si 0.94 43.71 27.47 68.60 1.88 45.60 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 23 N -0.51 -13.15 10.15 -177.12 -1.80 -14.95 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.23 0.14 8.06 -2.91 -0.02 0.12 16 28 H 0.19 1.72 7.74 -2.91 -0.02 1.70 16 29 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.41 13.53 8.32 -92.71 -0.77 12.76 16 32 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 33 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 34 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -76.68 313.65 2.33 -74.35 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.32 Total: 9.17 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 6.04 Total: 30.85 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -6.03 Total: -109.78 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: 0.12 Total: -50.19 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -76.68 2.33 -74.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318023418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.281 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds