Wall clock time and date at job start Tue Mar 31 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35966 * 119.25312 * 2 1 4 4 C 1.38383 * 119.27004 * 180.02562 * 3 2 1 5 5 C 1.46519 * 120.97941 * 180.02562 * 4 3 2 6 6 C 1.35451 * 119.99781 * 114.23735 * 5 4 3 7 7 C 1.41453 * 119.99940 * 353.32275 * 6 5 4 8 8 O 1.21821 * 119.99636 * 354.85464 * 7 6 5 9 9 N 1.34777 * 119.99697 * 174.85652 * 7 6 5 10 10 C 1.36806 * 119.99785 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.39040 * 120.00023 * 180.02562 * 10 9 7 13 13 N 1.31383 * 120.00008 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00207 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47146 * 59.99362 * 14 12 10 16 16 H 1.48498 * 109.47437 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46966 * 299.99712 * 14 12 10 18 18 C 1.47361 * 118.03962 * 0.27405 * 4 3 2 19 19 O 1.21667 * 120.74271 * 179.73495 * 18 4 3 20 20 N 1.34974 * 118.51260 * 359.43531 * 18 4 3 21 21 C 1.46499 * 119.75532 * 180.26653 * 20 18 4 22 22 C 1.34224 * 119.24380 * 180.02562 * 2 1 3 23 23 O 1.21565 * 118.90911 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.46755 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47408 * 119.99758 * 1 2 3 26 26 H 1.08994 * 109.47270 * 240.00394 * 1 2 3 27 27 H 1.07999 * 120.36707 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.99968 * 294.23083 * 5 4 3 29 29 H 1.07993 * 119.99634 * 173.60270 * 6 5 4 30 30 H 0.96994 * 120.00170 * 359.97438 * 9 7 6 31 31 H 0.96994 * 119.99864 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47394 * 270.30472 * 21 20 18 33 33 H 1.09000 * 109.47391 * 30.31161 * 21 20 18 34 34 H 1.09001 * 109.46666 * 150.30793 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1863 0.0000 4 6 3.5132 1.1867 -0.0005 5 6 4.2670 2.4431 0.0000 6 6 5.0288 2.7753 1.0696 7 6 4.9874 1.9832 2.2408 8 8 4.1990 1.0581 2.3228 9 7 5.8203 2.2519 3.2658 10 6 5.7807 1.4854 4.3983 11 1 5.0817 0.6653 4.4711 12 6 6.6394 1.7630 5.4560 13 7 7.4894 2.7610 5.3676 14 14 6.5849 0.7169 7.0026 15 1 6.8870 -0.6951 6.6561 16 1 7.5930 1.2146 7.9728 17 1 5.2315 0.7992 7.6084 18 6 4.2063 -0.1137 -0.0073 19 8 5.4216 -0.1707 -0.0129 20 7 3.4628 -1.2402 -0.0010 21 6 4.1237 -2.5476 -0.0015 22 6 2.1207 -1.1712 -0.0005 23 8 1.4792 -2.2038 -0.0005 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3633 -0.5137 0.8900 27 1 1.5832 2.1180 -0.0004 28 1 4.2154 3.1042 -0.8524 29 1 5.6643 3.6476 1.0298 30 1 6.4482 2.9882 3.2002 31 1 8.0882 2.9548 6.1056 32 1 4.2871 -2.8717 -1.0293 33 1 5.0820 -2.4706 0.5120 34 1 3.4934 -3.2734 0.5124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318103233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:33 Heat of formation + Delta-G solvation = -38.296075 kcal Electronic energy + Delta-G solvation = -22020.472133 eV Core-core repulsion = 18534.508233 eV Total energy + Delta-G solvation = -3485.963901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77703 -38.84693 -38.13448 -36.94926 -34.81764 -34.35664 -33.07715 -31.36845 -30.02320 -27.96321 -26.65023 -25.42786 -23.56896 -23.13600 -21.48607 -18.96041 -18.63518 -17.88510 -17.12308 -16.86696 -16.63295 -15.79767 -15.27367 -14.68624 -14.58314 -14.49800 -14.12413 -13.65142 -13.40393 -13.15258 -13.00694 -12.85421 -12.62127 -12.49316 -12.15897 -11.59941 -11.54491 -11.14416 -11.07196 -10.60753 -10.49439 -10.29271 -9.82141 -9.58466 -9.41223 -8.99474 -8.53364 -8.02193 -7.45420 -6.54081 -3.83684 1.38467 1.89406 2.23198 2.41751 3.18891 3.20864 3.25700 3.41768 3.88384 4.12161 4.43144 4.62208 4.76019 5.05056 5.19942 5.23496 5.35158 5.47142 5.51534 5.52912 5.55682 5.77410 5.85916 5.91384 6.09211 6.18470 6.44998 6.59284 6.84475 7.01260 7.44241 7.58816 7.88871 8.01471 8.35997 8.56287 9.10776 9.48349 10.06537 10.62519 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.005333 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.134287 B = 5249.180554 C = 5610.342065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.529 5.529 3 C 0.120 3.880 4 C -0.149 4.149 5 C -0.071 4.071 6 C -0.141 4.141 7 C 0.453 3.547 8 O -0.598 6.598 9 N -0.541 5.541 10 C -0.288 4.288 11 H 0.104 0.896 12 C 0.023 3.977 13 N -0.889 5.889 14 Si 0.933 3.067 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.572 3.428 19 O -0.501 6.501 20 N -0.553 5.553 21 C 0.085 3.915 22 C 0.697 3.303 23 O -0.563 6.563 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.171 0.829 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.393 0.607 31 H 0.275 0.725 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 -0.052 -11.506 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.249 5.249 3 C -0.001 4.001 4 C -0.159 4.159 5 C -0.094 4.094 6 C -0.162 4.162 7 C 0.244 3.756 8 O -0.487 6.487 9 N -0.173 5.173 10 C -0.418 4.418 11 H 0.122 0.878 12 C -0.181 4.181 13 N -0.528 5.528 14 Si 0.759 3.241 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.198 1.198 18 C 0.366 3.634 19 O -0.374 6.374 20 N -0.296 5.296 21 C -0.057 4.057 22 C 0.400 3.600 23 O -0.439 6.439 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.188 0.812 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.227 0.773 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.284 -1.282 -11.239 15.287 hybrid contribution 0.546 0.156 1.004 1.154 sum -9.737 -1.125 -10.235 14.171 Atomic orbital electron populations 1.21923 0.75514 1.03762 1.03952 1.43941 1.08841 1.04327 1.67783 1.22360 0.92188 0.88899 0.96649 1.20236 0.91290 0.93204 1.11126 1.21196 0.97696 0.93047 0.97480 1.22346 0.98916 1.00248 0.94724 1.16646 0.85851 0.88204 0.84871 1.90603 1.42275 1.33871 1.81977 1.41984 1.32004 1.29256 1.14096 1.19734 1.18697 1.11686 0.91714 0.87780 1.25375 0.95677 0.97128 0.99896 1.69591 1.21329 1.28286 1.33643 0.85878 0.78160 0.79829 0.80202 1.19725 1.20740 1.19754 1.18452 0.87210 0.83236 0.74455 1.90789 1.12832 1.86440 1.47344 1.46118 1.05739 1.10425 1.67315 1.21794 0.99068 0.81830 1.02965 1.15587 0.81878 0.83883 0.78644 1.90933 1.65344 1.31654 1.55967 0.89195 0.90649 0.90537 0.81232 0.85307 0.86317 0.77314 0.91455 0.91481 0.89051 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 9.94 59.85 0.59 1.44 16 2 N -0.53 -7.45 2.98 -128.41 -0.38 -7.83 16 3 C 0.12 1.64 10.20 -15.67 -0.16 1.48 16 4 C -0.15 -2.60 3.70 -102.80 -0.38 -2.98 16 5 C -0.07 -1.14 9.49 -37.24 -0.35 -1.50 16 6 C -0.14 -2.66 9.73 -39.35 -0.38 -3.04 16 7 C 0.45 11.01 7.12 -15.04 -0.11 10.91 16 8 O -0.60 -15.94 12.37 3.54 0.04 -15.90 16 9 N -0.54 -14.05 5.27 -13.65 -0.07 -14.12 16 10 C -0.29 -8.10 9.68 -15.04 -0.15 -8.25 16 11 H 0.10 3.08 7.15 -52.49 -0.38 2.70 16 12 C 0.02 0.60 5.50 -17.45 -0.10 0.51 16 13 N -0.89 -24.05 13.05 55.50 0.72 -23.32 16 14 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.57 11.68 5.88 -12.46 -0.07 11.60 16 19 O -0.50 -11.69 15.99 3.68 0.06 -11.63 16 20 N -0.55 -10.23 2.96 -129.58 -0.38 -10.62 16 21 C 0.08 1.34 10.11 59.85 0.60 1.95 16 22 C 0.70 12.10 8.09 -87.76 -0.71 11.39 16 23 O -0.56 -10.36 15.62 5.31 0.08 -10.28 16 24 H 0.09 0.52 7.72 -51.93 -0.40 0.12 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.17 1.56 7.84 -52.49 -0.41 1.14 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.39 9.76 7.85 -40.82 -0.32 9.44 16 31 H 0.28 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 34 H 0.09 1.31 7.35 -51.93 -0.38 0.93 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -35.98 302.74 -5.12 -41.10 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.52 Total: 8.45 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: -1.21 Total: 23.52 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.11 Total: -55.89 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: 0.19 Total: -37.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.98 -5.12 -41.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318103233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.806 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds