Wall clock time and date at job start Tue Mar 31 2020 00:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35966 * 119.25312 * 2 1 4 4 C 1.38383 * 119.27004 * 180.02562 * 3 2 1 5 5 C 1.46519 * 120.97941 * 180.02562 * 4 3 2 6 6 C 1.35451 * 119.99781 * 114.23735 * 5 4 3 7 7 C 1.41453 * 119.99940 * 353.32275 * 6 5 4 8 8 O 1.21821 * 119.99636 * 354.85464 * 7 6 5 9 9 N 1.34777 * 119.99697 * 174.85652 * 7 6 5 10 10 C 1.36806 * 119.99785 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.39040 * 120.00023 * 180.02562 * 10 9 7 13 13 N 1.31383 * 120.00008 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00207 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47146 * 59.99362 * 14 12 10 16 16 H 1.48498 * 109.47437 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46966 * 299.99712 * 14 12 10 18 18 C 1.47361 * 118.03962 * 0.27405 * 4 3 2 19 19 O 1.21667 * 120.74271 * 179.73495 * 18 4 3 20 20 N 1.34974 * 118.51260 * 359.43531 * 18 4 3 21 21 C 1.46499 * 119.75532 * 180.26653 * 20 18 4 22 22 C 1.34224 * 119.24380 * 180.02562 * 2 1 3 23 23 O 1.21565 * 118.90911 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.46755 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47408 * 119.99758 * 1 2 3 26 26 H 1.08994 * 109.47270 * 240.00394 * 1 2 3 27 27 H 1.07999 * 120.36707 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.99968 * 294.23083 * 5 4 3 29 29 H 1.07993 * 119.99634 * 173.60270 * 6 5 4 30 30 H 0.96994 * 120.00170 * 359.97438 * 9 7 6 31 31 H 0.96994 * 119.99864 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47394 * 270.30472 * 21 20 18 33 33 H 1.09000 * 109.47391 * 30.31161 * 21 20 18 34 34 H 1.09001 * 109.46666 * 150.30793 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1863 0.0000 4 6 3.5132 1.1867 -0.0005 5 6 4.2670 2.4431 0.0000 6 6 5.0288 2.7753 1.0696 7 6 4.9874 1.9832 2.2408 8 8 4.1990 1.0581 2.3228 9 7 5.8203 2.2519 3.2658 10 6 5.7807 1.4854 4.3983 11 1 5.0817 0.6653 4.4711 12 6 6.6394 1.7630 5.4560 13 7 7.4894 2.7610 5.3676 14 14 6.5849 0.7169 7.0026 15 1 6.8870 -0.6951 6.6561 16 1 7.5930 1.2146 7.9728 17 1 5.2315 0.7992 7.6084 18 6 4.2063 -0.1137 -0.0073 19 8 5.4216 -0.1707 -0.0129 20 7 3.4628 -1.2402 -0.0010 21 6 4.1237 -2.5476 -0.0015 22 6 2.1207 -1.1712 -0.0005 23 8 1.4792 -2.2038 -0.0005 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3633 -0.5137 0.8900 27 1 1.5832 2.1180 -0.0004 28 1 4.2154 3.1042 -0.8524 29 1 5.6643 3.6476 1.0298 30 1 6.4482 2.9882 3.2002 31 1 8.0882 2.9548 6.1056 32 1 4.2871 -2.8717 -1.0293 33 1 5.0820 -2.4706 0.5120 34 1 3.4934 -3.2734 0.5124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318103233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:32 Heat of formation + Delta-G solvation = -65.427677 kcal Electronic energy + Delta-G solvation = -22021.648648 eV Core-core repulsion = 18534.508233 eV Total energy + Delta-G solvation = -3487.140415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.11519 -40.47596 -39.76038 -38.25598 -36.31194 -36.13910 -34.60897 -33.31503 -31.31222 -29.25525 -27.80598 -27.19378 -25.00401 -24.50856 -23.00936 -20.58776 -20.10796 -19.62981 -18.58258 -18.27136 -18.04295 -17.34553 -16.55726 -16.47968 -16.00673 -15.79638 -15.75002 -15.28533 -14.97039 -14.68272 -14.49458 -14.18582 -13.86327 -13.59391 -13.45380 -13.29926 -12.99618 -12.89934 -12.47855 -12.18474 -12.15234 -11.98014 -11.54793 -11.32294 -10.84538 -10.52860 -10.22248 -9.98707 -8.83178 -8.51061 -5.93063 0.10877 0.49309 0.97527 1.07291 1.36203 1.40447 1.47652 2.11654 2.27055 2.50444 2.62863 3.35571 3.45847 3.53782 3.77214 4.17176 4.22400 4.31038 4.35718 4.44284 4.51336 4.54349 4.59299 4.73793 4.83739 4.85144 5.21763 5.30786 5.35920 5.48195 5.63942 6.05679 6.25111 6.51411 6.60508 6.93919 7.11683 7.57722 8.16661 8.66021 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.005333 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.134287 B = 5249.180554 C = 5610.342065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.524 5.524 3 C 0.171 3.829 4 C -0.218 4.218 5 C -0.008 4.008 6 C -0.193 4.193 7 C 0.462 3.538 8 O -0.626 6.626 9 N -0.565 5.565 10 C -0.326 4.326 11 H 0.075 0.925 12 C -0.014 4.014 13 N -0.915 5.915 14 Si 0.991 3.009 15 H -0.277 1.277 16 H -0.266 1.266 17 H -0.269 1.269 18 C 0.559 3.441 19 O -0.552 6.552 20 N -0.562 5.562 21 C 0.081 3.919 22 C 0.685 3.315 23 O -0.578 6.578 24 H 0.139 0.861 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.232 0.768 28 H 0.187 0.813 29 H 0.148 0.852 30 H 0.395 0.605 31 H 0.279 0.721 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 1.339 -13.100 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.242 5.242 3 C 0.049 3.951 4 C -0.227 4.227 5 C -0.030 4.030 6 C -0.214 4.214 7 C 0.255 3.745 8 O -0.516 6.516 9 N -0.200 5.200 10 C -0.456 4.456 11 H 0.093 0.907 12 C -0.214 4.214 13 N -0.556 5.556 14 Si 0.815 3.185 15 H -0.203 1.203 16 H -0.190 1.190 17 H -0.194 1.194 18 C 0.356 3.644 19 O -0.429 6.429 20 N -0.305 5.305 21 C -0.060 4.060 22 C 0.388 3.612 23 O -0.455 6.455 24 H 0.157 0.843 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.248 0.752 28 H 0.204 0.796 29 H 0.165 0.835 30 H 0.228 0.772 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.881 0.108 -12.857 18.200 hybrid contribution 0.999 -0.401 1.184 1.601 sum -11.881 -0.294 -11.673 16.658 Atomic orbital electron populations 1.22387 0.72253 1.07167 1.04240 1.44376 1.10790 1.03508 1.65509 1.23197 0.91200 0.90463 0.90277 1.20468 0.93224 0.92413 1.16634 1.21925 0.92427 0.91648 0.96985 1.22327 1.03140 1.02005 0.93913 1.17595 0.83895 0.87399 0.85646 1.90565 1.43005 1.35016 1.83038 1.41990 1.33538 1.29985 1.14469 1.19569 1.19839 1.12428 0.93780 0.90677 1.26069 0.95053 0.98182 1.02095 1.69648 1.22003 1.29382 1.34540 0.85023 0.78528 0.77889 0.77095 1.20294 1.19013 1.19379 1.19060 0.87010 0.84602 0.73755 1.90751 1.14724 1.87186 1.50282 1.46323 1.06548 1.10821 1.66770 1.21880 0.98208 0.81483 1.04414 1.15891 0.81458 0.85003 0.78823 1.90919 1.65411 1.32507 1.56688 0.84300 0.89422 0.91311 0.75185 0.79558 0.83479 0.77172 0.91122 0.89020 0.90883 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 9.94 127.77 1.27 2.37 16 2 N -0.52 -12.76 2.98 -678.75 -2.02 -14.78 16 3 C 0.17 3.82 10.20 84.09 0.86 4.68 16 4 C -0.22 -6.99 3.70 -18.68 -0.07 -7.06 16 5 C -0.01 -0.23 9.49 23.79 0.23 0.00 16 6 C -0.19 -6.98 9.73 22.42 0.22 -6.76 16 7 C 0.46 22.84 7.12 85.03 0.61 23.44 16 8 O -0.63 -34.01 12.37 -3.26 -0.04 -34.05 16 9 N -0.57 -30.57 5.27 -315.25 -1.66 -32.23 16 10 C -0.33 -19.25 9.68 84.11 0.81 -18.44 16 11 H 0.08 4.73 7.15 -2.91 -0.02 4.71 16 12 C -0.01 -0.76 5.50 84.95 0.47 -0.29 16 13 N -0.92 -50.84 13.05 21.68 0.28 -50.55 16 14 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 C 0.56 22.73 5.88 86.61 0.51 23.24 16 19 O -0.55 -26.59 15.99 -2.77 -0.04 -26.64 16 20 N -0.56 -20.77 2.96 -800.49 -2.37 -23.14 16 21 C 0.08 2.65 10.11 127.77 1.29 3.94 16 22 C 0.68 22.73 8.09 179.35 1.45 24.18 16 23 O -0.58 -20.57 15.62 -3.92 -0.06 -20.63 16 24 H 0.14 0.61 7.72 -2.38 -0.02 0.59 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.23 2.31 7.84 -2.91 -0.02 2.29 16 28 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.15 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.39 20.43 7.85 -92.71 -0.73 19.70 16 31 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.62 7.44 -2.39 -0.02 2.60 16 34 H 0.09 2.85 7.35 -2.39 -0.02 2.83 16 Total: -1.00 -85.30 302.74 4.18 -81.12 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.42 Total: 25.18 kcal Atomic # 6 Polarization: 41.67 SS G_CDS: 7.64 Total: 49.31 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.77 Total: -120.71 kcal Atomic # 8 Polarization: -81.17 SS G_CDS: -0.15 Total: -81.32 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -85.30 4.18 -81.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318103233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.696 kcal (2) G-P(sol) polarization free energy of solvation -85.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds