Wall clock time and date at job start Tue Mar 31 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35970 * 119.24474 * 2 1 4 4 C 1.38383 * 119.26727 * 179.97438 * 3 2 1 5 5 C 1.46515 * 120.97734 * 180.02562 * 4 3 2 6 6 C 1.35451 * 120.00176 * 174.39778 * 5 4 3 7 7 C 1.41441 * 120.00460 * 185.06015 * 6 5 4 8 8 O 1.21820 * 120.00195 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00167 * 180.02562 * 7 6 5 10 10 C 1.36808 * 120.00328 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.39039 * 120.00491 * 179.97438 * 10 9 7 13 13 N 1.31379 * 119.99724 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00222 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46760 * 60.00169 * 14 12 10 16 16 H 1.48497 * 109.46687 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46958 * 300.00170 * 14 12 10 18 18 C 1.47353 * 118.04315 * 359.97438 * 4 3 2 19 19 O 1.21663 * 120.74529 * 180.02562 * 18 4 3 20 20 N 1.34976 * 118.51061 * 0.02562 * 18 4 3 21 21 C 1.46504 * 119.75492 * 180.02562 * 20 18 4 22 22 C 1.34219 * 119.25131 * 179.72844 * 2 1 3 23 23 O 1.21559 * 118.90343 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47566 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46788 * 239.99573 * 1 2 3 26 26 H 1.09001 * 109.46697 * 120.00164 * 1 2 3 27 27 H 1.07997 * 120.36906 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.00302 * 354.39384 * 5 4 3 29 29 H 1.08003 * 119.99635 * 5.06195 * 6 5 4 30 30 H 0.97001 * 119.99950 * 359.97438 * 9 7 6 31 31 H 0.96997 * 120.00064 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.47143 * 0.02562 * 21 20 18 33 33 H 1.08996 * 109.47114 * 120.00349 * 21 20 18 34 34 H 1.08994 * 109.46981 * 240.00349 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1864 0.0000 4 6 3.5131 1.1869 0.0005 5 6 4.2668 2.4434 0.0011 6 6 5.6162 2.4237 0.1162 7 6 6.3346 3.6373 0.2245 8 8 5.7397 4.7003 0.2148 9 7 7.6774 3.6177 0.3384 10 6 8.3723 4.7914 0.4437 11 1 7.8448 5.7339 0.4351 12 6 9.7575 4.7712 0.5618 13 7 10.3991 3.6248 0.5728 14 14 10.7063 6.3740 0.7048 15 1 10.2540 7.1107 1.9123 16 1 12.1577 6.0814 0.8188 17 1 10.4612 7.2036 -0.5021 18 6 4.2064 -0.1133 0.0017 19 8 5.4217 -0.1702 0.0027 20 7 3.4629 -1.2399 0.0016 21 6 4.1240 -2.5473 0.0033 22 6 2.1209 -1.1710 0.0056 23 8 1.4795 -2.2036 0.0100 24 1 -0.3634 1.0275 -0.0005 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 1.5830 2.1180 -0.0004 28 1 3.7463 3.3854 -0.0902 29 1 6.1437 1.4813 0.1251 30 1 8.1512 2.7712 0.3465 31 1 11.3655 3.6107 0.6547 32 1 5.2050 -2.4078 0.0049 33 1 3.8283 -3.1028 0.8933 34 1 3.8304 -3.1039 -0.8866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318103235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:35 Heat of formation + Delta-G solvation = -41.840295 kcal Electronic energy + Delta-G solvation = -20973.021392 eV Core-core repulsion = 17486.903803 eV Total energy + Delta-G solvation = -3486.117589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30655 -39.26997 -38.21915 -37.45766 -35.42338 -34.26909 -33.40700 -31.30953 -30.22488 -28.41518 -27.09281 -25.50714 -23.86661 -23.60222 -21.38722 -19.71215 -18.45794 -17.83573 -17.36446 -17.30497 -17.13775 -15.88083 -15.76917 -15.05662 -15.01554 -14.67498 -14.08587 -13.81569 -13.57222 -13.39167 -13.28412 -13.06934 -12.89980 -12.53978 -12.41791 -11.79599 -11.70366 -11.56931 -11.12816 -11.07054 -10.48083 -10.28430 -10.01336 -9.84789 -9.72160 -9.49316 -8.30369 -8.02958 -7.62338 -6.53886 -3.80645 0.61014 1.71349 1.73734 2.37169 2.79100 3.20336 3.22087 3.26756 3.45192 4.08574 4.12763 4.38379 4.51345 4.66817 4.90557 5.02877 5.12088 5.18818 5.19226 5.23801 5.35251 5.37155 5.54884 5.64718 5.95694 6.07652 6.18302 6.56833 6.99337 7.08644 7.17630 7.43201 7.44181 7.80778 8.03474 8.58206 9.11594 9.50686 10.11152 10.62358 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036153 B = 0.003528 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.300517 B = 7934.001777 C = 8680.449880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.529 5.529 3 C 0.140 3.860 4 C -0.194 4.194 5 C -0.083 4.083 6 C -0.155 4.155 7 C 0.447 3.553 8 O -0.616 6.616 9 N -0.538 5.538 10 C -0.289 4.289 11 H 0.108 0.892 12 C 0.021 3.979 13 N -0.883 5.883 14 Si 0.936 3.064 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.547 3.453 19 O -0.488 6.488 20 N -0.555 5.555 21 C 0.080 3.920 22 C 0.690 3.310 23 O -0.548 6.548 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.183 0.817 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.396 0.604 31 H 0.277 0.723 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 -10.046 -1.139 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.248 5.248 3 C 0.017 3.983 4 C -0.203 4.203 5 C -0.106 4.106 6 C -0.176 4.176 7 C 0.239 3.761 8 O -0.506 6.506 9 N -0.170 5.170 10 C -0.419 4.419 11 H 0.126 0.874 12 C -0.183 4.183 13 N -0.523 5.523 14 Si 0.762 3.238 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.341 3.659 19 O -0.361 6.361 20 N -0.299 5.299 21 C -0.061 4.061 22 C 0.393 3.607 23 O -0.423 6.423 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.200 0.800 28 H 0.154 0.846 29 H 0.164 0.836 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.901 -10.124 -1.122 19.733 hybrid contribution 0.831 0.229 0.081 0.865 sum -16.070 -9.895 -1.042 18.901 Atomic orbital electron populations 1.22056 0.74738 1.04406 1.04444 1.44222 1.09439 1.04313 1.66785 1.22788 0.92392 0.89348 0.93821 1.20661 0.91421 0.93271 1.14996 1.21215 0.93908 0.92873 1.02567 1.23017 0.95737 1.00337 0.98535 1.16712 0.82869 0.89488 0.87021 1.90630 1.68547 1.32586 1.58819 1.42063 1.05582 1.09680 1.59680 1.19854 0.89218 0.87651 1.45171 0.87415 1.25446 0.96928 0.98976 0.96936 1.69612 1.09875 1.25390 1.47374 0.85826 0.77816 0.80815 0.79303 1.19630 1.20781 1.19618 1.18901 0.87490 0.83707 0.75802 1.90712 1.12601 1.85579 1.47254 1.46332 1.05802 1.10696 1.67100 1.21907 0.99687 0.80932 1.03615 1.15665 0.81794 0.84029 0.79229 1.90987 1.65115 1.31472 1.54737 0.88642 0.90160 0.90164 0.80028 0.84580 0.83638 0.77021 0.91328 0.87809 0.90438 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 9.94 59.85 0.59 1.05 16 2 N -0.53 -4.96 2.98 -128.41 -0.38 -5.34 16 3 C 0.14 1.32 10.20 -15.66 -0.16 1.16 16 4 C -0.19 -2.70 6.04 -102.80 -0.62 -3.32 16 5 C -0.08 -1.42 9.42 -37.24 -0.35 -1.77 16 6 C -0.15 -3.26 9.10 -39.36 -0.36 -3.62 16 7 C 0.45 11.47 7.50 -15.04 -0.11 11.36 16 8 O -0.62 -17.43 15.68 5.08 0.08 -17.35 16 9 N -0.54 -14.48 5.27 -13.65 -0.07 -14.55 16 10 C -0.29 -8.19 9.68 -15.03 -0.15 -8.33 16 11 H 0.11 3.15 7.15 -52.48 -0.38 2.78 16 12 C 0.02 0.57 5.50 -17.45 -0.10 0.47 16 13 N -0.88 -24.16 13.05 55.50 0.72 -23.43 16 14 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 C 0.55 8.34 7.61 -12.46 -0.09 8.25 16 19 O -0.49 -8.82 12.97 5.22 0.07 -8.75 16 20 N -0.56 -7.26 2.96 -129.59 -0.38 -7.64 16 21 C 0.08 0.85 9.96 59.85 0.60 1.45 16 22 C 0.69 8.50 8.09 -87.77 -0.71 7.79 16 23 O -0.55 -7.62 16.08 5.31 0.09 -7.54 16 24 H 0.09 0.21 7.72 -51.93 -0.40 -0.20 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.18 1.00 7.84 -52.49 -0.41 0.58 16 28 H 0.14 2.28 7.46 -52.48 -0.39 1.89 16 29 H 0.15 3.07 4.81 -52.50 -0.25 2.81 16 30 H 0.40 10.35 7.85 -40.82 -0.32 10.03 16 31 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.10 1.13 6.92 -51.93 -0.36 0.77 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -35.42 303.51 -5.13 -40.54 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.34 Total: 9.22 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -1.46 Total: 14.48 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.11 Total: -50.96 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: 0.23 Total: -33.64 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.42 -5.13 -40.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318103235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.297 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds