Wall clock time and date at job start Tue Mar 31 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35970 * 119.24474 * 2 1 4 4 C 1.38383 * 119.26727 * 179.97438 * 3 2 1 5 5 C 1.46515 * 120.97734 * 180.02562 * 4 3 2 6 6 C 1.35451 * 120.00176 * 174.39778 * 5 4 3 7 7 C 1.41441 * 120.00460 * 185.06015 * 6 5 4 8 8 O 1.21820 * 120.00195 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00167 * 180.02562 * 7 6 5 10 10 C 1.36808 * 120.00328 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.39039 * 120.00491 * 179.97438 * 10 9 7 13 13 N 1.31379 * 119.99724 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00222 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46760 * 60.00169 * 14 12 10 16 16 H 1.48497 * 109.46687 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46958 * 300.00170 * 14 12 10 18 18 C 1.47353 * 118.04315 * 359.97438 * 4 3 2 19 19 O 1.21663 * 120.74529 * 180.02562 * 18 4 3 20 20 N 1.34976 * 118.51061 * 0.02562 * 18 4 3 21 21 C 1.46504 * 119.75492 * 180.02562 * 20 18 4 22 22 C 1.34219 * 119.25131 * 179.72844 * 2 1 3 23 23 O 1.21559 * 118.90343 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47566 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46788 * 239.99573 * 1 2 3 26 26 H 1.09001 * 109.46697 * 120.00164 * 1 2 3 27 27 H 1.07997 * 120.36906 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.00302 * 354.39384 * 5 4 3 29 29 H 1.08003 * 119.99635 * 5.06195 * 6 5 4 30 30 H 0.97001 * 119.99950 * 359.97438 * 9 7 6 31 31 H 0.96997 * 120.00064 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.47143 * 0.02562 * 21 20 18 33 33 H 1.08996 * 109.47114 * 120.00349 * 21 20 18 34 34 H 1.08994 * 109.46981 * 240.00349 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1864 0.0000 4 6 3.5131 1.1869 0.0005 5 6 4.2668 2.4434 0.0011 6 6 5.6162 2.4237 0.1162 7 6 6.3346 3.6373 0.2245 8 8 5.7397 4.7003 0.2148 9 7 7.6774 3.6177 0.3384 10 6 8.3723 4.7914 0.4437 11 1 7.8448 5.7339 0.4351 12 6 9.7575 4.7712 0.5618 13 7 10.3991 3.6248 0.5728 14 14 10.7063 6.3740 0.7048 15 1 10.2540 7.1107 1.9123 16 1 12.1577 6.0814 0.8188 17 1 10.4612 7.2036 -0.5021 18 6 4.2064 -0.1133 0.0017 19 8 5.4217 -0.1702 0.0027 20 7 3.4629 -1.2399 0.0016 21 6 4.1240 -2.5473 0.0033 22 6 2.1209 -1.1710 0.0056 23 8 1.4795 -2.2036 0.0100 24 1 -0.3634 1.0275 -0.0005 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 1.5830 2.1180 -0.0004 28 1 3.7463 3.3854 -0.0902 29 1 6.1437 1.4813 0.1251 30 1 8.1512 2.7712 0.3465 31 1 11.3655 3.6107 0.6547 32 1 5.2050 -2.4078 0.0049 33 1 3.8283 -3.1028 0.8933 34 1 3.8304 -3.1039 -0.8866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318103235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:35 Heat of formation + Delta-G solvation = -68.658533 kcal Electronic energy + Delta-G solvation = -20974.184318 eV Core-core repulsion = 17486.903803 eV Total energy + Delta-G solvation = -3487.280516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.32894 -40.49859 -40.02370 -38.48160 -36.52883 -36.12592 -34.82652 -33.30916 -31.42670 -29.39372 -27.94398 -27.22961 -25.15229 -24.66863 -22.78592 -21.03808 -20.21348 -19.43250 -18.48326 -18.36939 -18.28596 -17.46708 -16.69710 -16.60392 -16.09748 -15.90206 -15.78619 -15.34541 -14.95889 -14.77903 -14.63555 -14.20590 -13.87574 -13.52650 -13.39063 -13.26901 -13.10716 -12.94628 -12.59416 -12.45314 -12.11330 -12.10795 -11.56149 -11.14443 -11.05527 -10.88161 -10.30278 -10.06058 -8.89464 -8.50738 -5.93819 -0.45598 0.56354 0.83662 1.04595 1.41099 1.48112 1.54353 1.80511 2.28811 2.30459 2.68079 3.12617 3.35846 3.39680 3.71788 4.00316 4.15582 4.25043 4.31804 4.34769 4.39835 4.51950 4.66233 4.69967 4.86533 4.87326 5.08310 5.17088 5.36813 5.53376 5.71312 6.03643 6.06201 6.36507 6.57839 6.74766 7.08711 7.52963 8.11258 8.66847 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036153 B = 0.003528 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.300517 B = 7934.001777 C = 8680.449880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.520 5.520 3 C 0.236 3.764 4 C -0.267 4.267 5 C -0.001 4.001 6 C -0.233 4.233 7 C 0.462 3.538 8 O -0.648 6.648 9 N -0.561 5.561 10 C -0.335 4.335 11 H 0.087 0.913 12 C -0.018 4.018 13 N -0.918 5.918 14 Si 1.003 2.997 15 H -0.267 1.267 16 H -0.269 1.269 17 H -0.267 1.267 18 C 0.540 3.460 19 O -0.531 6.531 20 N -0.558 5.558 21 C 0.075 3.925 22 C 0.685 3.315 23 O -0.559 6.559 24 H 0.143 0.857 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.245 0.755 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.393 0.607 31 H 0.281 0.719 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.309 -10.133 -1.286 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.235 5.235 3 C 0.109 3.891 4 C -0.277 4.277 5 C -0.023 4.023 6 C -0.254 4.254 7 C 0.255 3.745 8 O -0.541 6.541 9 N -0.194 5.194 10 C -0.465 4.465 11 H 0.105 0.895 12 C -0.218 4.218 13 N -0.558 5.558 14 Si 0.826 3.174 15 H -0.192 1.192 16 H -0.194 1.194 17 H -0.192 1.192 18 C 0.336 3.664 19 O -0.408 6.408 20 N -0.301 5.301 21 C -0.066 4.066 22 C 0.388 3.612 23 O -0.435 6.435 24 H 0.161 0.839 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.261 0.739 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.227 0.773 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.229 -10.278 -1.272 23.621 hybrid contribution 1.390 -0.069 0.078 1.394 sum -19.839 -10.347 -1.194 22.407 Atomic orbital electron populations 1.22573 0.71334 1.07822 1.05010 1.44721 1.11381 1.03423 1.63986 1.23668 0.90875 0.91082 0.83461 1.20292 0.93106 0.91305 1.22949 1.21509 0.92542 0.94838 0.93412 1.22610 0.97257 0.97934 1.07563 1.17414 0.82590 0.90445 0.84029 1.90561 1.69180 1.34314 1.59997 1.42034 1.06046 1.09136 1.62225 1.19816 0.90277 0.87476 1.48882 0.89485 1.26300 0.97073 1.02522 0.95894 1.69698 1.10172 1.27125 1.48767 0.84844 0.76762 0.76578 0.79259 1.19221 1.19373 1.19221 1.19167 0.87208 0.84663 0.75342 1.90698 1.14421 1.86061 1.49631 1.46434 1.06309 1.10875 1.66439 1.22034 0.99285 0.80433 1.04801 1.15913 0.81403 0.84899 0.78971 1.90995 1.65214 1.32260 1.54993 0.83906 0.89735 0.89637 0.73921 0.83272 0.84259 0.77322 0.91001 0.88699 0.89266 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 9.94 127.77 1.27 1.54 16 2 N -0.52 -6.62 2.98 -678.76 -2.02 -8.64 16 3 C 0.24 2.85 10.20 84.09 0.86 3.71 16 4 C -0.27 -6.57 6.04 -18.69 -0.11 -6.68 16 5 C 0.00 -0.02 9.42 23.78 0.22 0.21 16 6 C -0.23 -10.19 9.10 22.41 0.20 -9.99 16 7 C 0.46 24.98 7.50 85.03 0.64 25.62 16 8 O -0.65 -37.95 15.68 -4.73 -0.07 -38.03 16 9 N -0.56 -32.47 5.27 -315.26 -1.66 -34.13 16 10 C -0.33 -20.22 9.68 84.11 0.81 -19.41 16 11 H 0.09 5.44 7.15 -2.91 -0.02 5.42 16 12 C -0.02 -0.99 5.50 84.95 0.47 -0.53 16 13 N -0.92 -52.67 13.05 21.68 0.28 -52.38 16 14 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 C 0.54 16.05 7.61 86.61 0.66 16.71 16 19 O -0.53 -20.10 12.97 -4.23 -0.05 -20.16 16 20 N -0.56 -13.61 2.96 -800.51 -2.37 -15.98 16 21 C 0.08 1.56 9.96 127.77 1.27 2.83 16 22 C 0.68 14.35 8.09 179.35 1.45 15.80 16 23 O -0.56 -13.61 16.08 -3.90 -0.06 -13.68 16 24 H 0.14 -0.70 7.72 -2.39 -0.02 -0.71 16 25 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.24 0.17 7.84 -2.91 -0.02 0.15 16 28 H 0.15 4.47 7.46 -2.91 -0.02 4.45 16 29 H 0.14 6.33 4.81 -3.15 -0.02 6.32 16 30 H 0.39 22.45 7.85 -92.71 -0.73 21.72 16 31 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.09 2.16 6.92 -2.39 -0.02 2.14 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -85.65 303.51 4.24 -81.41 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.43 Total: 25.61 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 7.74 Total: 29.81 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -5.77 Total: -111.13 kcal Atomic # 8 Polarization: -71.67 SS G_CDS: -0.19 Total: -71.86 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -85.65 4.24 -81.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318103235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.750 kcal (2) G-P(sol) polarization free energy of solvation -85.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds