Wall clock time and date at job start Tue Mar 31 2020 00:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38795 * 120.00017 * 2 1 4 4 C 1.38957 * 120.18613 * 5.02086 * 3 2 1 5 5 C 1.37953 * 120.07335 * 179.97438 * 4 3 2 6 6 C 1.38660 * 120.44188 * 0.02562 * 5 4 3 7 7 N 1.48016 * 119.81054 * 180.02562 * 6 5 4 8 8 O 1.31701 * 120.00463 * 0.02562 * 7 6 5 9 9 O 1.31705 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.37691 * 120.37102 * 359.71781 * 6 5 4 11 11 C 1.39849 * 119.91922 * 0.53729 * 10 6 5 12 12 C 1.47243 * 120.22073 * 179.73845 * 11 10 6 13 13 O 1.21533 * 120.00318 * 234.77552 * 12 11 10 14 14 N 1.34780 * 120.00048 * 55.05415 * 12 11 10 15 15 C 1.46497 * 119.99797 * 5.49901 * 14 12 11 16 16 C 1.33294 * 120.00044 * 185.50267 * 14 12 11 17 17 H 1.07997 * 120.00687 * 5.15891 * 16 14 12 18 18 C 1.46792 * 119.99855 * 185.15503 * 16 14 12 19 19 N 1.29318 * 120.00095 * 5.15018 * 18 16 14 20 20 Si 1.86800 * 120.00045 * 185.15283 * 18 16 14 21 21 H 1.48505 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47483 * 120.00064 * 20 18 16 23 23 H 1.48501 * 109.46939 * 240.00034 * 20 18 16 24 24 H 1.09002 * 109.46850 * 60.00041 * 1 2 3 25 25 H 1.08999 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46955 * 300.00094 * 1 2 3 27 27 H 0.96999 * 119.99694 * 180.02562 * 2 1 3 28 28 H 1.08003 * 119.96376 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.77845 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.04339 * 180.29580 * 10 6 5 31 31 H 1.09004 * 109.47410 * 355.11056 * 15 14 12 32 32 H 1.08999 * 109.47453 * 115.10702 * 15 14 12 33 33 H 1.08997 * 109.47819 * 235.10723 * 15 14 12 34 34 H 0.96998 * 120.00006 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1590 1.2020 0.0000 4 6 1.4721 2.4054 0.1051 5 6 2.1643 3.5987 0.1054 6 6 3.5469 3.6089 0.0007 7 7 4.2755 4.8974 0.0030 8 8 3.6107 6.0297 0.1048 9 8 5.5887 4.9114 -0.0958 10 6 4.2463 2.4271 -0.0991 11 6 3.5597 1.2087 -0.1063 12 6 4.3005 -0.0588 -0.2186 13 8 4.0218 -0.8497 -1.0982 14 7 5.2840 -0.3444 0.6577 15 6 5.5359 0.5475 1.7922 16 6 6.0274 -1.4383 0.4919 17 1 5.8981 -2.0509 -0.3881 18 6 7.0220 -1.8103 1.5054 19 7 7.1086 -1.1349 2.6048 20 14 8.1625 -3.2593 1.2071 21 1 7.8625 -3.8610 -0.1170 22 1 9.5722 -2.7930 1.2315 23 1 7.9591 -4.2763 2.2699 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 0.3952 2.4064 0.1875 29 1 1.6256 4.5311 0.1878 30 1 5.3235 2.4410 -0.1756 31 1 4.8940 1.4250 1.7142 32 1 5.3209 0.0217 2.7225 33 1 6.5803 0.8595 1.7844 34 1 7.7656 -1.3810 3.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318291220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:16 Heat of formation + Delta-G solvation = 40.209431 kcal Electronic energy + Delta-G solvation = -21735.494004 eV Core-core repulsion = 18252.934358 eV Total energy + Delta-G solvation = -3482.559646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.37607 -38.59699 -37.75680 -35.68062 -34.80725 -34.00442 -32.27970 -31.17709 -30.48082 -27.08879 -26.40738 -25.11412 -24.87539 -22.99436 -21.45892 -19.89177 -18.00036 -17.87984 -17.35328 -17.13608 -16.13959 -16.06037 -15.55280 -14.92331 -14.61270 -14.29384 -14.22505 -14.06847 -13.69636 -13.16720 -12.83921 -12.59667 -12.36020 -12.08465 -11.66458 -11.42469 -11.22961 -11.14469 -10.92002 -10.73250 -10.55712 -10.48206 -10.33007 -10.32331 -9.35225 -9.07571 -8.58468 -8.33863 -7.69928 -6.71063 -3.84669 -0.23642 1.08480 1.54566 1.58391 2.91125 3.07296 3.13102 3.28606 3.36817 3.78956 3.89912 4.48877 4.58990 4.80665 4.84595 4.94441 5.06414 5.18579 5.24285 5.42074 5.48599 5.65491 5.79459 5.91953 6.00729 6.15489 6.24314 6.50612 6.82538 6.96048 7.07172 7.17444 7.19744 7.52810 7.77291 8.20164 8.91386 9.18200 9.85120 10.22806 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.006048 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.565086 B = 4628.691170 C = 5926.850244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.298 3.702 4 C -0.207 4.207 5 C -0.004 4.004 6 C -0.072 4.072 7 N 0.005 4.995 8 O -0.210 6.210 9 O -0.198 6.198 10 C 0.013 3.987 11 C -0.153 4.153 12 C 0.429 3.571 13 O -0.603 6.603 14 N -0.392 5.392 15 C 0.095 3.905 16 C -0.340 4.340 17 H 0.115 0.885 18 C 0.040 3.960 19 N -0.836 5.836 20 Si 0.936 3.064 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.421 0.579 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 2.847 0.410 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.335 5.335 3 C 0.184 3.816 4 C -0.230 4.230 5 C -0.025 4.025 6 C -0.163 4.163 7 N 0.475 4.525 8 O -0.396 6.396 9 O -0.386 6.386 10 C -0.009 4.009 11 C -0.162 4.162 12 C 0.221 3.779 13 O -0.493 6.493 14 N -0.103 5.103 15 C -0.048 4.048 16 C -0.469 4.469 17 H 0.132 0.868 18 C -0.172 4.172 19 N -0.470 5.470 20 Si 0.761 3.239 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.203 1.203 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.260 0.740 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.150 1.911 0.238 11.315 hybrid contribution 1.058 -0.384 0.167 1.138 sum -10.092 1.527 0.405 10.215 Atomic orbital electron populations 1.21757 0.79557 1.03380 1.01543 1.44795 1.06410 1.06701 1.75617 1.18145 0.90250 0.86941 0.86267 1.20488 1.00351 0.89432 1.12769 1.20714 0.90652 0.99626 0.91540 1.19904 0.91862 0.81009 1.23504 1.50362 1.02988 1.04000 0.95187 1.96205 1.68039 1.18009 1.57368 1.96271 0.89342 1.96193 1.56805 1.21009 1.01630 0.88516 0.89774 1.19695 0.91783 0.94784 1.09960 1.17009 0.85487 0.87374 0.88065 1.90587 1.69897 1.50576 1.38270 1.42624 1.25760 1.20692 1.21252 1.22053 1.00815 0.91691 0.90276 1.20770 1.15058 1.04282 1.06792 0.86764 1.26974 0.97815 0.98574 0.93856 1.69150 1.32674 1.38269 1.06943 0.85693 0.79008 0.79790 0.79401 1.18459 1.20115 1.20304 0.92140 0.90100 0.92185 0.73985 0.83772 0.83273 0.82881 0.94988 0.90431 0.91155 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.96 59.85 0.60 1.32 16 2 N -0.71 -9.97 5.72 -65.19 -0.37 -10.34 16 3 C 0.30 4.63 6.65 -83.60 -0.56 4.08 16 4 C -0.21 -2.57 9.30 -39.42 -0.37 -2.94 16 5 C 0.00 -0.06 9.56 -39.53 -0.38 -0.44 16 6 C -0.07 -1.21 6.88 -79.99 -0.55 -1.76 16 7 N 0.01 0.10 4.98 33.94 0.17 0.27 16 8 O -0.21 -3.88 19.13 -31.57 -0.60 -4.49 16 9 O -0.20 -4.01 19.13 -31.57 -0.60 -4.61 16 10 C 0.01 0.23 7.08 -39.18 -0.28 -0.05 16 11 C -0.15 -2.90 4.68 -104.79 -0.49 -3.39 16 12 C 0.43 9.94 6.30 -12.60 -0.08 9.86 16 13 O -0.60 -15.62 15.57 5.34 0.08 -15.53 16 14 N -0.39 -9.50 2.93 -121.93 -0.36 -9.86 16 15 C 0.09 2.08 8.28 59.85 0.50 2.58 16 16 C -0.34 -8.82 9.76 -13.46 -0.13 -8.95 16 17 H 0.11 3.14 7.24 -52.49 -0.38 2.76 16 18 C 0.04 0.97 5.59 -15.15 -0.08 0.88 16 19 N -0.84 -19.99 9.62 56.00 0.54 -19.45 16 20 Si 0.94 18.93 29.65 -169.99 -5.04 13.89 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.44 7.75 -51.93 -0.40 0.03 16 27 H 0.42 6.90 7.02 -40.82 -0.29 6.61 16 28 H 0.14 1.28 6.72 -52.48 -0.35 0.93 16 29 H 0.15 1.68 7.56 -52.49 -0.40 1.28 16 30 H 0.15 2.91 7.30 -52.49 -0.38 2.53 16 31 H 0.03 0.62 4.82 -51.93 -0.25 0.37 16 32 H 0.08 1.77 6.92 -51.93 -0.36 1.41 16 33 H 0.07 1.61 7.24 -51.93 -0.38 1.24 16 34 H 0.28 6.19 8.26 -40.82 -0.34 5.86 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -29.67 299.16 -6.66 -36.33 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.16 Total: 8.08 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.82 Total: 1.20 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.02 Total: -39.38 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.12 Total: -24.63 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.04 Total: 13.89 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.67 -6.66 -36.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318291220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.544 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds