Wall clock time and date at job start Tue Mar 31 2020 00:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38795 * 120.00017 * 2 1 4 4 C 1.38957 * 120.18613 * 5.02086 * 3 2 1 5 5 C 1.37953 * 120.07335 * 179.97438 * 4 3 2 6 6 C 1.38660 * 120.44188 * 0.02562 * 5 4 3 7 7 N 1.48016 * 119.81054 * 180.02562 * 6 5 4 8 8 O 1.31701 * 120.00463 * 0.02562 * 7 6 5 9 9 O 1.31705 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.37691 * 120.37102 * 359.71781 * 6 5 4 11 11 C 1.39849 * 119.91922 * 0.53729 * 10 6 5 12 12 C 1.47243 * 120.22073 * 179.73845 * 11 10 6 13 13 O 1.21533 * 120.00318 * 234.77552 * 12 11 10 14 14 N 1.34780 * 120.00048 * 55.05415 * 12 11 10 15 15 C 1.46497 * 119.99797 * 5.49901 * 14 12 11 16 16 C 1.33294 * 120.00044 * 185.50267 * 14 12 11 17 17 H 1.07997 * 120.00687 * 5.15891 * 16 14 12 18 18 C 1.46792 * 119.99855 * 185.15503 * 16 14 12 19 19 N 1.29318 * 120.00095 * 5.15018 * 18 16 14 20 20 Si 1.86800 * 120.00045 * 185.15283 * 18 16 14 21 21 H 1.48505 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47483 * 120.00064 * 20 18 16 23 23 H 1.48501 * 109.46939 * 240.00034 * 20 18 16 24 24 H 1.09002 * 109.46850 * 60.00041 * 1 2 3 25 25 H 1.08999 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46955 * 300.00094 * 1 2 3 27 27 H 0.96999 * 119.99694 * 180.02562 * 2 1 3 28 28 H 1.08003 * 119.96376 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.77845 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.04339 * 180.29580 * 10 6 5 31 31 H 1.09004 * 109.47410 * 355.11056 * 15 14 12 32 32 H 1.08999 * 109.47453 * 115.10702 * 15 14 12 33 33 H 1.08997 * 109.47819 * 235.10723 * 15 14 12 34 34 H 0.96998 * 120.00006 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1590 1.2020 0.0000 4 6 1.4721 2.4054 0.1051 5 6 2.1643 3.5987 0.1054 6 6 3.5469 3.6089 0.0007 7 7 4.2755 4.8974 0.0030 8 8 3.6107 6.0297 0.1048 9 8 5.5887 4.9114 -0.0958 10 6 4.2463 2.4271 -0.0991 11 6 3.5597 1.2087 -0.1063 12 6 4.3005 -0.0588 -0.2186 13 8 4.0218 -0.8497 -1.0982 14 7 5.2840 -0.3444 0.6577 15 6 5.5359 0.5475 1.7922 16 6 6.0274 -1.4383 0.4919 17 1 5.8981 -2.0509 -0.3881 18 6 7.0220 -1.8103 1.5054 19 7 7.1086 -1.1349 2.6048 20 14 8.1625 -3.2593 1.2071 21 1 7.8625 -3.8610 -0.1170 22 1 9.5722 -2.7930 1.2315 23 1 7.9591 -4.2763 2.2699 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 0.3952 2.4064 0.1875 29 1 1.6256 4.5311 0.1878 30 1 5.3235 2.4410 -0.1756 31 1 4.8940 1.4250 1.7142 32 1 5.3209 0.0217 2.7225 33 1 6.5803 0.8595 1.7844 34 1 7.7656 -1.3810 3.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318291220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:15 Heat of formation + Delta-G solvation = 20.818880 kcal Electronic energy + Delta-G solvation = -21736.334841 eV Core-core repulsion = 18252.934358 eV Total energy + Delta-G solvation = -3483.400484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77829 -40.16755 -39.22960 -37.02079 -36.52011 -35.43217 -34.09947 -32.58088 -31.67722 -28.40711 -28.01594 -26.80859 -26.04259 -24.50764 -22.69974 -21.46597 -19.55637 -19.25562 -18.98622 -18.49677 -17.81641 -17.28807 -16.95798 -16.65137 -16.11600 -15.73320 -15.41682 -15.36553 -15.08586 -14.57431 -14.19474 -14.01909 -13.71777 -13.54327 -13.06544 -12.91858 -12.81623 -12.71077 -12.35855 -12.29860 -12.15460 -12.11453 -11.81066 -11.60366 -11.17495 -10.58435 -10.26692 -10.21506 -8.88343 -8.54207 -5.81521 -1.65454 -0.17274 0.23356 0.25178 1.27853 1.38846 1.51128 1.83691 2.17602 2.21005 2.34517 2.90630 2.94219 3.40454 3.51978 3.74288 3.81873 4.04311 4.25045 4.38660 4.42816 4.59607 4.64541 4.70344 4.77173 4.86986 4.93771 4.98908 5.11773 5.27888 5.30554 5.75504 5.81814 6.00599 6.25701 6.30861 7.03338 7.34299 8.00020 8.38939 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.006048 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.565086 B = 4628.691170 C = 5926.850244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.709 5.709 3 C 0.304 3.696 4 C -0.180 4.180 5 C 0.019 3.981 6 C -0.086 4.086 7 N 0.011 4.989 8 O -0.183 6.183 9 O -0.274 6.274 10 C 0.013 3.987 11 C -0.186 4.186 12 C 0.435 3.565 13 O -0.638 6.638 14 N -0.409 5.409 15 C 0.114 3.886 16 C -0.389 4.389 17 H 0.086 0.914 18 C 0.013 3.987 19 N -0.850 5.850 20 Si 0.999 3.001 21 H -0.271 1.271 22 H -0.266 1.266 23 H -0.264 1.264 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.407 0.593 28 H 0.198 0.802 29 H 0.186 0.814 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 3.506 1.073 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.329 5.329 3 C 0.186 3.814 4 C -0.203 4.203 5 C -0.002 4.002 6 C -0.178 4.178 7 N 0.473 4.527 8 O -0.378 6.378 9 O -0.444 6.444 10 C -0.009 4.009 11 C -0.195 4.195 12 C 0.227 3.773 13 O -0.530 6.530 14 N -0.121 5.121 15 C -0.029 4.029 16 C -0.518 4.518 17 H 0.104 0.896 18 C -0.199 4.199 19 N -0.484 5.484 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.191 1.191 23 H -0.188 1.188 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.243 0.757 28 H 0.215 0.785 29 H 0.204 0.796 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.374 2.550 0.911 14.627 hybrid contribution 1.735 -0.597 -0.071 1.836 sum -12.639 1.953 0.840 12.817 Atomic orbital electron populations 1.22203 0.75951 1.05357 1.03744 1.45216 1.08751 1.05612 1.73300 1.18398 0.88919 0.88867 0.85174 1.20967 1.02436 0.87073 1.09823 1.21203 0.88795 1.01603 0.88605 1.20058 0.93050 0.79568 1.25141 1.50542 1.02877 1.04467 0.94799 1.96156 1.67728 1.18663 1.55265 1.96296 0.90160 1.96393 1.61504 1.20748 1.00742 0.89345 0.90042 1.19334 0.93422 0.92639 1.14118 1.17664 0.84816 0.88248 0.86607 1.90534 1.70848 1.52272 1.39325 1.42750 1.26421 1.20781 1.22108 1.21826 1.00113 0.91841 0.89161 1.20624 1.18069 1.05717 1.07390 0.89620 1.27693 0.98191 1.00682 0.93294 1.69186 1.33021 1.38977 1.07174 0.84802 0.77267 0.76923 0.78935 1.19526 1.19111 1.18832 0.90122 0.88670 0.89354 0.75697 0.78502 0.79641 0.85290 0.92825 0.91540 0.92986 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 9.96 127.77 1.27 2.16 16 2 N -0.71 -17.91 5.72 -360.16 -2.06 -19.97 16 3 C 0.30 8.58 6.65 38.76 0.26 8.84 16 4 C -0.18 -3.46 9.30 22.37 0.21 -3.25 16 5 C 0.02 0.42 9.56 22.30 0.21 0.63 16 6 C -0.09 -2.75 6.88 36.35 0.25 -2.50 16 7 N 0.01 0.40 4.98 -46.53 -0.23 0.17 16 8 O -0.18 -6.29 19.13 3.51 0.07 -6.23 16 9 O -0.27 -11.69 19.13 3.51 0.07 -11.62 16 10 C 0.01 0.49 7.08 22.53 0.16 0.65 16 11 C -0.19 -7.03 4.68 -19.98 -0.09 -7.13 16 12 C 0.43 20.97 6.30 86.61 0.55 21.52 16 13 O -0.64 -34.54 15.57 -3.82 -0.06 -34.60 16 14 N -0.41 -20.92 2.93 -657.94 -1.93 -22.84 16 15 C 0.11 5.22 8.28 127.77 1.06 6.27 16 16 C -0.39 -21.43 9.76 86.71 0.85 -20.58 16 17 H 0.09 5.07 7.24 -2.91 -0.02 5.05 16 18 C 0.01 0.62 5.59 87.30 0.49 1.11 16 19 N -0.85 -41.64 9.62 23.26 0.22 -41.42 16 20 Si 1.00 39.66 29.65 68.60 2.03 41.70 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H 0.08 0.79 8.11 -2.39 -0.02 0.77 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.71 7.75 -2.39 -0.02 0.69 16 27 H 0.41 13.00 7.02 -92.71 -0.65 12.35 16 28 H 0.20 1.82 6.72 -2.91 -0.02 1.80 16 29 H 0.19 2.90 7.56 -2.91 -0.02 2.88 16 30 H 0.13 5.32 7.30 -2.91 -0.02 5.30 16 31 H 0.05 2.17 4.82 -2.38 -0.01 2.16 16 32 H 0.07 3.15 6.92 -2.39 -0.02 3.13 16 33 H 0.05 2.53 7.24 -2.39 -0.02 2.51 16 34 H 0.29 12.87 8.26 -92.71 -0.77 12.10 16 Total: -1.00 -70.17 299.16 3.84 -66.33 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.52 Total: 20.77 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.20 Total: 7.71 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -3.99 Total: -84.07 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: 0.07 Total: -52.45 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.70 kcal Total: -70.17 3.84 -66.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318291220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.152 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds