Wall clock time and date at job start Tue Mar 31 2020 00:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38825 * 120.42300 * 2 1 4 4 C 1.39516 * 118.25551 * 179.72056 * 3 2 1 5 5 C 1.48375 * 120.55085 * 179.97438 * 4 3 2 6 6 O 1.21385 * 120.00425 * 0.02562 * 5 4 3 7 7 O 1.34644 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99914 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46741 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00342 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99956 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00238 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47141 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99868 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99813 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99712 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47810 * 59.99681 * 17 15 13 19 19 H 1.48508 * 109.47011 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47233 * 299.99283 * 17 15 13 21 21 N 1.33127 * 118.89773 * 359.97438 * 4 3 2 22 22 C 1.31539 * 120.73351 * 359.97438 * 21 4 3 23 23 N 1.31915 * 121.92551 * 0.02562 * 22 21 4 24 24 H 1.09000 * 109.47110 * 90.00780 * 1 2 3 25 25 H 1.09000 * 109.47425 * 210.00242 * 1 2 3 26 26 H 1.08998 * 109.47788 * 330.00747 * 1 2 3 27 27 H 1.08004 * 120.86975 * 359.69611 * 3 2 1 28 28 H 1.08994 * 109.46591 * 299.99073 * 8 7 5 29 29 H 1.08994 * 109.47428 * 59.99453 * 8 7 5 30 30 H 0.97005 * 119.99612 * 359.97438 * 11 9 8 31 31 H 1.08994 * 109.47270 * 300.00294 * 12 11 9 32 32 H 1.09002 * 109.47056 * 60.00133 * 12 11 9 33 33 H 0.97008 * 119.99905 * 180.02562 * 16 15 13 34 34 H 1.08003 * 119.03786 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1971 0.0000 4 6 3.6041 1.1443 0.0060 5 6 4.4061 2.3927 0.0057 6 8 3.8498 3.4715 0.0007 7 8 5.7510 2.3288 0.0110 8 6 6.4708 3.5899 0.0110 9 6 7.9538 3.3217 0.0179 10 8 8.3637 2.1803 0.0229 11 7 8.8247 4.3504 0.0185 12 6 10.2662 4.0898 0.0258 13 6 11.0133 5.3986 0.0244 14 1 10.4687 6.3312 0.0182 15 6 12.3921 5.4053 0.0299 16 7 13.0551 4.2696 0.0369 17 14 13.3181 7.0276 0.0288 18 1 12.9507 7.8082 1.2374 19 1 14.7794 6.7634 0.0361 20 1 12.9605 7.8009 -1.1876 21 7 4.2029 -0.0447 0.0120 22 6 3.4954 -1.1536 0.0127 23 7 2.1764 -1.1395 0.0072 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.6912 2.1444 -0.0049 28 1 6.2082 4.1580 -0.8814 29 1 6.2013 4.1622 0.8985 30 1 8.4968 5.2634 0.0141 31 1 10.5283 3.5224 0.9187 32 1 10.5363 3.5167 -0.8612 33 1 14.0252 4.2744 0.0412 34 1 4.0095 -2.1034 0.0181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321056817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:26 Heat of formation + Delta-G solvation = -71.075564 kcal Electronic energy + Delta-G solvation = -20075.090675 eV Core-core repulsion = 16587.705350 eV Total energy + Delta-G solvation = -3487.385326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69377 -40.39951 -38.71887 -36.57697 -34.98800 -34.25261 -33.13167 -32.41493 -29.46284 -29.08768 -26.95042 -25.49256 -24.17133 -22.62555 -21.35300 -19.96350 -18.88768 -17.91094 -17.11439 -16.89182 -16.85659 -15.94395 -15.77307 -15.52226 -15.30712 -15.03666 -14.61801 -14.25150 -13.65299 -13.51928 -13.13275 -13.03053 -12.88995 -12.57565 -11.99436 -11.79639 -11.36025 -11.22989 -11.03221 -11.01407 -10.92642 -10.79205 -10.34992 -10.09570 -9.78037 -9.45929 -9.18840 -8.78196 -7.99258 -6.19561 -4.27214 -0.05034 0.46490 2.03869 2.08192 3.16370 3.24024 3.28815 3.30206 3.34856 3.46360 3.54077 3.82490 4.18168 4.31892 4.39766 4.47567 4.82279 4.99999 5.02099 5.06221 5.15235 5.17609 5.21746 5.31194 5.40826 5.82514 6.02591 6.40097 7.20805 7.27300 7.34955 7.45851 7.59090 7.62011 7.91815 8.48928 8.70609 8.95710 9.39032 10.90490 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.054146 B = 0.002627 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.995921 B =10654.350375 C =11145.597531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.176 3.824 3 C -0.165 4.165 4 C 0.153 3.847 5 C 0.521 3.479 6 O -0.491 6.491 7 O -0.299 6.299 8 C 0.045 3.955 9 C 0.499 3.501 10 O -0.528 6.528 11 N -0.706 5.706 12 C 0.251 3.749 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.469 5.469 22 C 0.301 3.699 23 N -0.503 5.503 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.393 0.607 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.834 -5.520 -0.100 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.188 4.188 4 C 0.007 3.993 5 C 0.363 3.637 6 O -0.378 6.378 7 O -0.212 6.212 8 C -0.032 4.032 9 C 0.282 3.718 10 O -0.405 6.405 11 N -0.357 5.357 12 C 0.131 3.869 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.186 5.186 22 C 0.013 3.987 23 N -0.219 5.219 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.181 0.819 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.226 0.774 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -23.908 -6.913 -0.089 24.887 hybrid contribution 0.145 2.207 -0.022 2.212 sum -23.762 -4.706 -0.111 24.224 Atomic orbital electron populations 1.20835 0.86826 1.04595 1.04182 1.21868 0.98092 0.87453 0.89800 1.22807 0.93782 1.01877 1.00300 1.20440 0.90579 0.91168 0.97073 1.20708 0.81946 0.87697 0.73393 1.90859 1.72733 1.28966 1.45246 1.86735 1.17603 1.34811 1.82043 1.23024 0.91473 0.83873 1.04858 1.19809 0.86476 0.86529 0.79020 1.90738 1.79315 1.21286 1.49147 1.46356 1.09127 1.07644 1.72567 1.19176 0.72293 0.97317 0.98072 1.21166 0.91646 0.91939 1.53684 0.91815 1.24955 0.97429 0.97005 0.94616 1.69965 1.08094 1.25554 1.48529 0.86443 0.78604 0.82957 0.78707 1.20040 1.21048 1.20039 1.68542 1.41397 0.98200 1.10440 1.25181 0.86182 0.96962 0.90352 1.68256 1.10706 1.30447 1.12485 0.89181 0.89426 0.89636 0.81884 0.88146 0.88148 0.77439 0.95220 0.95227 0.92301 0.77487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.22 36.01 0.37 -0.09 16 2 C 0.18 1.44 6.83 -82.23 -0.56 0.88 16 3 C -0.17 -1.52 9.41 -38.89 -0.37 -1.89 16 4 C 0.15 1.92 6.79 -82.66 -0.56 1.36 16 5 C 0.52 7.43 7.97 34.90 0.28 7.71 16 6 O -0.49 -7.04 16.21 -19.18 -0.31 -7.35 16 7 O -0.30 -4.99 9.61 -47.02 -0.45 -5.44 16 8 C 0.05 0.69 5.95 36.01 0.21 0.90 16 9 C 0.50 10.07 7.91 -10.98 -0.09 9.98 16 10 O -0.53 -13.14 16.50 -14.10 -0.23 -13.38 16 11 N -0.71 -14.57 5.55 -61.48 -0.34 -14.91 16 12 C 0.25 6.59 5.43 -5.20 -0.03 6.56 16 13 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.87 13.29 55.43 0.74 -25.13 16 17 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 N -0.47 -6.16 10.25 -11.16 -0.11 -6.28 16 22 C 0.30 3.06 12.27 -92.27 -1.13 1.92 16 23 N -0.50 -4.84 10.36 -10.81 -0.11 -4.95 16 24 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.23 8.10 -51.93 -0.42 -0.20 16 27 H 0.16 1.17 7.74 -52.48 -0.41 0.76 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.21 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -34.96 317.09 -7.02 -41.98 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.66 Total: 0.97 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: -2.29 Total: 14.06 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.17 Total: -51.27 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.00 Total: -26.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.96 -7.02 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321056817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.092 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds