Wall clock time and date at job start Tue Mar 31 2020 00:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38825 * 120.42300 * 2 1 4 4 C 1.39516 * 118.25551 * 179.72056 * 3 2 1 5 5 C 1.48375 * 120.55085 * 179.97438 * 4 3 2 6 6 O 1.21385 * 120.00425 * 0.02562 * 5 4 3 7 7 O 1.34644 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99914 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46741 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00342 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99956 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00238 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47141 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99868 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99813 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99712 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47810 * 59.99681 * 17 15 13 19 19 H 1.48508 * 109.47011 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47233 * 299.99283 * 17 15 13 21 21 N 1.33127 * 118.89773 * 359.97438 * 4 3 2 22 22 C 1.31539 * 120.73351 * 359.97438 * 21 4 3 23 23 N 1.31915 * 121.92551 * 0.02562 * 22 21 4 24 24 H 1.09000 * 109.47110 * 90.00780 * 1 2 3 25 25 H 1.09000 * 109.47425 * 210.00242 * 1 2 3 26 26 H 1.08998 * 109.47788 * 330.00747 * 1 2 3 27 27 H 1.08004 * 120.86975 * 359.69611 * 3 2 1 28 28 H 1.08994 * 109.46591 * 299.99073 * 8 7 5 29 29 H 1.08994 * 109.47428 * 59.99453 * 8 7 5 30 30 H 0.97005 * 119.99612 * 359.97438 * 11 9 8 31 31 H 1.08994 * 109.47270 * 300.00294 * 12 11 9 32 32 H 1.09002 * 109.47056 * 60.00133 * 12 11 9 33 33 H 0.97008 * 119.99905 * 180.02562 * 16 15 13 34 34 H 1.08003 * 119.03786 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1971 0.0000 4 6 3.6041 1.1443 0.0060 5 6 4.4061 2.3927 0.0057 6 8 3.8498 3.4715 0.0007 7 8 5.7510 2.3288 0.0110 8 6 6.4708 3.5899 0.0110 9 6 7.9538 3.3217 0.0179 10 8 8.3637 2.1803 0.0229 11 7 8.8247 4.3504 0.0185 12 6 10.2662 4.0898 0.0258 13 6 11.0133 5.3986 0.0244 14 1 10.4687 6.3312 0.0182 15 6 12.3921 5.4053 0.0299 16 7 13.0551 4.2696 0.0369 17 14 13.3181 7.0276 0.0288 18 1 12.9507 7.8082 1.2374 19 1 14.7794 6.7634 0.0361 20 1 12.9605 7.8009 -1.1876 21 7 4.2029 -0.0447 0.0120 22 6 3.4954 -1.1536 0.0127 23 7 2.1764 -1.1395 0.0072 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.6912 2.1444 -0.0049 28 1 6.2082 4.1580 -0.8814 29 1 6.2013 4.1622 0.8985 30 1 8.4968 5.2634 0.0141 31 1 10.5283 3.5224 0.9187 32 1 10.5363 3.5167 -0.8612 33 1 14.0252 4.2744 0.0412 34 1 4.0095 -2.1034 0.0181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321056817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:25 Heat of formation + Delta-G solvation = -95.848406 kcal Electronic energy + Delta-G solvation = -20076.164906 eV Core-core repulsion = 16587.705350 eV Total energy + Delta-G solvation = -3488.459557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52965 -41.50816 -40.35963 -37.78381 -36.20193 -35.70756 -34.42823 -33.86357 -30.94733 -29.72423 -28.68600 -26.50330 -24.95579 -24.52379 -22.35123 -21.68430 -19.86526 -19.31053 -18.36185 -18.03948 -18.01913 -17.43158 -16.95770 -16.62650 -16.50561 -16.39588 -15.93386 -15.82266 -14.73381 -14.59208 -14.22053 -14.11685 -13.92033 -13.84912 -13.67572 -13.20643 -12.96304 -12.68326 -12.31294 -12.24392 -12.08327 -12.02335 -11.76851 -11.52992 -10.95741 -10.81025 -10.79672 -10.55485 -9.94500 -8.29565 -6.46539 -0.90151 -0.22893 0.94373 1.09043 1.44305 1.47982 1.53493 1.56360 2.24458 2.43315 2.57082 2.80914 2.93411 3.05492 3.29349 3.54321 3.65857 3.83223 3.97463 4.00975 4.23021 4.41814 4.75566 4.79570 4.87972 4.97674 5.08169 5.20936 5.30993 5.40676 5.61203 5.66433 5.81388 6.25776 6.62051 6.76212 6.83650 7.19963 7.35192 8.82369 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.054146 B = 0.002627 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.995921 B =10654.350375 C =11145.597531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.181 3.819 3 C -0.153 4.153 4 C 0.126 3.874 5 C 0.524 3.476 6 O -0.494 6.494 7 O -0.328 6.328 8 C 0.057 3.943 9 C 0.498 3.502 10 O -0.583 6.583 11 N -0.697 5.697 12 C 0.266 3.734 13 C -0.557 4.557 14 H 0.087 0.913 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.262 1.262 19 H -0.287 1.287 20 H -0.262 1.262 21 N -0.510 5.510 22 C 0.297 3.703 23 N -0.510 5.510 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.186 0.814 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.414 0.586 31 H -0.008 1.008 32 H -0.009 1.009 33 H 0.269 0.731 34 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.332 -3.561 -0.129 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.032 3.968 3 C -0.175 4.175 4 C -0.018 4.018 5 C 0.366 3.634 6 O -0.381 6.381 7 O -0.242 6.242 8 C -0.020 4.020 9 C 0.284 3.716 10 O -0.463 6.463 11 N -0.349 5.349 12 C 0.144 3.856 13 C -0.595 4.595 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.186 1.186 21 N -0.227 5.227 22 C 0.010 3.990 23 N -0.226 5.226 24 H 0.124 0.876 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.203 0.797 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.250 0.750 31 H 0.010 0.990 32 H 0.009 0.991 33 H 0.078 0.922 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -26.460 -4.909 -0.118 26.912 hybrid contribution 0.798 1.498 -0.015 1.698 sum -25.662 -3.411 -0.133 25.888 Atomic orbital electron populations 1.21008 0.83674 1.05958 1.05535 1.22581 0.99900 0.86604 0.87757 1.23076 0.92313 1.03322 0.98797 1.20471 0.91647 0.90451 0.99280 1.20989 0.80988 0.88532 0.72857 1.90837 1.72445 1.29183 1.45622 1.86716 1.19210 1.35555 1.82691 1.22926 0.87219 0.83986 1.07831 1.20667 0.88731 0.85297 0.76928 1.90713 1.80759 1.23525 1.51284 1.46016 1.07176 1.09153 1.72544 1.18627 0.75656 0.96766 0.94546 1.21581 0.92197 0.92571 1.53150 0.89454 1.26080 0.98654 1.01091 0.93835 1.70134 1.08491 1.28501 1.49764 0.85183 0.76569 0.77782 0.79526 1.18617 1.21236 1.18606 1.68476 1.42825 0.99141 1.12306 1.25629 0.86653 0.97038 0.89724 1.68375 1.10376 1.31154 1.12673 0.87558 0.88952 0.87399 0.79664 0.85008 0.85014 0.74982 0.99045 0.99056 0.92208 0.75373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.22 71.24 0.73 0.18 16 2 C 0.18 2.55 6.83 42.65 0.29 2.84 16 3 C -0.15 -2.52 9.41 22.72 0.21 -2.31 16 4 C 0.13 3.08 6.79 41.96 0.28 3.36 16 5 C 0.52 14.54 7.97 70.52 0.56 15.10 16 6 O -0.49 -13.22 16.21 20.21 0.33 -12.89 16 7 O -0.33 -10.90 9.61 -49.15 -0.47 -11.37 16 8 C 0.06 1.65 5.95 71.24 0.42 2.07 16 9 C 0.50 20.38 7.91 87.66 0.69 21.07 16 10 O -0.58 -30.38 16.50 15.77 0.26 -30.12 16 11 N -0.70 -28.92 5.55 -466.79 -2.59 -31.51 16 12 C 0.27 14.51 5.43 85.63 0.46 14.98 16 13 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 14 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 15 C 0.00 0.17 5.46 84.66 0.46 0.64 16 16 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 17 Si 0.99 41.90 29.54 68.60 2.03 43.92 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 21 N -0.51 -13.55 10.25 -189.21 -1.94 -15.49 16 22 C 0.30 5.94 12.27 180.92 2.22 8.16 16 23 N -0.51 -9.12 10.36 -188.10 -1.95 -11.07 16 24 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.11 0.13 8.10 -2.39 -0.02 0.11 16 27 H 0.19 2.11 7.74 -2.91 -0.02 2.08 16 28 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.41 13.57 8.32 -92.70 -0.77 12.79 16 31 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 34 H 0.23 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -79.42 317.09 2.91 -76.51 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.37 Total: 11.21 kcal Atomic # 6 Polarization: 29.90 SS G_CDS: 6.58 Total: 36.48 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -6.19 Total: -113.75 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: 0.12 Total: -54.38 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -79.42 2.91 -76.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321056817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.337 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds