Wall clock time and date at job start Tue Mar 31 2020 00:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32147 * 120.53861 * 2 1 4 4 C 1.31865 * 120.97220 * 180.02562 * 3 2 1 5 5 N 1.31883 * 122.10940 * 0.02562 * 4 3 2 6 6 C 1.32129 * 120.97057 * 359.97438 * 5 4 3 7 7 C 1.39985 * 120.54025 * 180.02562 * 2 1 3 8 8 C 1.47709 * 120.94320 * 0.02562 * 7 2 1 9 9 O 1.21466 * 120.00274 * 5.91947 * 8 7 2 10 10 O 1.34712 * 119.99908 * 185.91408 * 8 7 2 11 11 C 1.45194 * 116.99994 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46886 * 180.02562 * 11 10 8 13 13 O 1.21283 * 120.00058 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99886 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47142 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99843 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00094 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00171 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47088 * 89.99754 * 20 18 16 22 22 H 1.48495 * 109.47197 * 209.99844 * 20 18 16 23 23 H 1.48502 * 109.46730 * 329.99654 * 20 18 16 24 24 H 1.08994 * 109.47324 * 96.55301 * 1 2 3 25 25 H 1.09001 * 109.47016 * 216.55420 * 1 2 3 26 26 H 1.08995 * 109.47122 * 336.54592 * 1 2 3 27 27 H 1.08001 * 118.94105 * 179.97438 * 4 3 2 28 28 H 1.07999 * 120.53980 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.46974 * 299.99675 * 11 10 8 30 30 H 1.08994 * 109.47523 * 60.00098 * 11 10 8 31 31 H 0.97000 * 120.00227 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46708 * 299.99324 * 15 14 12 33 33 H 1.08994 * 109.47230 * 59.99405 * 15 14 12 34 34 H 0.96998 * 120.00477 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4971 1.1481 -0.0005 5 7 4.2065 0.0364 -0.0015 6 6 3.6173 -1.1462 -0.0016 7 6 2.2183 -1.2057 -0.0005 8 6 1.5132 -2.5035 -0.0017 9 8 0.3039 -2.5376 -0.1107 10 8 2.2112 -3.6495 0.1180 11 6 1.4526 -4.8874 0.1085 12 6 2.3947 -6.0549 0.2523 13 8 3.5880 -5.8625 0.3524 14 7 1.9113 -7.3129 0.2686 15 6 2.8271 -8.4478 0.4089 16 6 2.0399 -9.7328 0.3976 17 1 0.9649 -9.7067 0.2965 18 6 2.6920 -10.9417 0.5164 19 7 4.0010 -10.9736 0.6391 20 14 1.7162 -12.5346 0.5032 21 1 1.5864 -13.0240 -0.8928 22 1 2.4210 -13.5538 1.3214 23 1 0.3653 -12.2922 1.0704 24 1 -0.3634 -0.1173 -1.0209 25 1 -0.3633 -0.8255 0.6121 26 1 -0.3633 0.9427 0.4090 27 1 4.0125 2.0972 -0.0009 28 1 4.2050 -2.0522 -0.0020 29 1 0.7460 -4.8869 0.9384 30 1 0.9085 -4.9730 -0.8320 31 1 0.9570 -7.4668 0.1881 32 1 3.5346 -8.4483 -0.4202 33 1 3.3702 -8.3621 1.3500 34 1 4.4598 -11.8241 0.7223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321917192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:28 Heat of formation + Delta-G solvation = -73.057750 kcal Electronic energy + Delta-G solvation = -20363.403695 eV Core-core repulsion = 16875.932416 eV Total energy + Delta-G solvation = -3487.471280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71895 -40.35516 -38.77856 -36.69120 -34.74077 -34.31336 -33.19963 -32.45930 -29.72992 -28.81349 -26.83109 -25.62888 -23.40286 -22.71519 -21.70634 -20.03009 -18.63182 -18.05397 -17.36991 -17.01924 -16.87046 -16.61796 -15.57549 -15.49736 -15.16375 -14.57973 -14.39926 -14.15859 -13.56142 -13.38339 -13.27885 -13.05157 -12.75547 -12.66796 -12.04910 -11.96754 -11.84307 -11.05241 -11.00656 -10.95858 -10.84104 -10.51676 -10.38254 -10.10911 -9.72038 -9.48448 -9.26799 -8.82627 -8.05216 -6.23274 -4.31007 -0.07434 0.60915 2.12021 2.16113 3.08886 3.20618 3.27023 3.29153 3.32081 3.54661 3.67431 3.84342 3.96008 4.27916 4.34561 4.55994 4.85184 5.03576 5.11508 5.14006 5.17562 5.25015 5.28139 5.40247 5.68427 5.88199 6.12289 6.47523 7.16619 7.22842 7.38724 7.40784 7.56192 7.57551 7.87703 8.43161 8.65547 8.89503 9.35600 10.86826 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044362 B = 0.002827 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.025497 B = 9900.940806 C =10502.682061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.242 3.758 3 N -0.529 5.529 4 C 0.327 3.673 5 N -0.530 5.530 6 C 0.217 3.783 7 C -0.237 4.237 8 C 0.520 3.480 9 O -0.496 6.496 10 O -0.323 6.323 11 C 0.051 3.949 12 C 0.499 3.501 13 O -0.534 6.534 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.204 0.796 28 H 0.190 0.810 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.393 0.607 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 21.068 -1.498 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.244 5.244 4 C 0.041 3.959 5 N -0.244 5.244 6 C 0.051 3.949 7 C -0.243 4.243 8 C 0.363 3.637 9 O -0.386 6.386 10 O -0.238 6.238 11 C -0.026 4.026 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.099 0.901 27 H 0.221 0.779 28 H 0.207 0.793 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.226 0.774 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.352 21.881 -1.425 22.571 hybrid contribution -1.335 -1.842 -0.077 2.276 sum -6.687 20.039 -1.501 21.179 Atomic orbital electron populations 1.21152 0.86383 1.04805 1.04932 1.22025 0.98245 0.86257 0.83897 1.68499 1.10396 1.29048 1.16458 1.25377 0.86706 0.97604 0.86227 1.68605 1.41314 0.98881 1.15631 1.23939 0.90794 0.97132 0.83061 1.20758 0.96565 0.92741 1.14203 1.20566 0.85553 0.84264 0.73308 1.90810 1.14489 1.87641 1.45644 1.86572 1.40422 1.13955 1.82831 1.22941 0.94054 0.80811 1.04838 1.19850 0.88911 0.84045 0.79004 1.90716 1.15799 1.85086 1.49531 1.46370 1.11942 1.05588 1.71619 1.19190 0.88931 0.80927 0.97846 1.21198 0.93805 0.90457 1.52987 0.91754 1.24949 0.94995 0.99445 0.94571 1.69964 1.07423 1.26727 1.48039 0.86390 0.79825 0.82386 0.78172 1.20409 1.20958 1.19708 0.88749 0.87643 0.90076 0.77925 0.79314 0.88177 0.88159 0.77372 0.95205 0.95204 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.98 36.01 0.32 -0.66 16 2 C 0.24 2.50 6.87 -81.80 -0.56 1.94 16 3 N -0.53 -5.30 10.36 -10.46 -0.11 -5.40 16 4 C 0.33 2.89 12.27 -92.02 -1.13 1.76 16 5 N -0.53 -5.60 10.42 -14.23 -0.15 -5.74 16 6 C 0.22 2.36 10.90 -16.76 -0.18 2.17 16 7 C -0.24 -2.65 5.91 -104.71 -0.62 -3.27 16 8 C 0.52 6.49 7.85 34.60 0.27 6.77 16 9 O -0.50 -6.41 13.33 -19.24 -0.26 -6.67 16 10 O -0.32 -4.59 9.13 -47.20 -0.43 -5.02 16 11 C 0.05 0.70 5.95 36.01 0.21 0.91 16 12 C 0.50 9.39 7.91 -10.98 -0.09 9.30 16 13 O -0.53 -12.36 16.50 -14.11 -0.23 -12.60 16 14 N -0.71 -13.87 5.55 -61.47 -0.34 -14.21 16 15 C 0.25 6.38 5.43 -5.19 -0.03 6.35 16 16 C -0.55 -14.30 9.28 -34.44 -0.32 -14.62 16 17 H 0.06 1.56 7.60 -52.48 -0.40 1.17 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 20 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.11 0.98 5.98 -51.93 -0.31 0.67 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.19 1.94 7.73 -52.49 -0.41 1.53 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.39 6.43 8.32 -40.82 -0.34 6.09 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -32.77 311.06 -6.88 -39.65 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.55 Total: 2.42 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -2.21 Total: 12.30 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.14 Total: -50.08 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.92 Total: -24.29 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.77 -6.88 -39.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321917192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.409 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds