Wall clock time and date at job start Tue Mar 31 2020 00:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32147 * 120.53861 * 2 1 4 4 C 1.31865 * 120.97220 * 180.02562 * 3 2 1 5 5 N 1.31883 * 122.10940 * 0.02562 * 4 3 2 6 6 C 1.32129 * 120.97057 * 359.97438 * 5 4 3 7 7 C 1.39985 * 120.54025 * 180.02562 * 2 1 3 8 8 C 1.47709 * 120.94320 * 0.02562 * 7 2 1 9 9 O 1.21466 * 120.00274 * 5.91947 * 8 7 2 10 10 O 1.34712 * 119.99908 * 185.91408 * 8 7 2 11 11 C 1.45194 * 116.99994 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46886 * 180.02562 * 11 10 8 13 13 O 1.21283 * 120.00058 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99886 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47142 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99843 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00094 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00171 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47088 * 89.99754 * 20 18 16 22 22 H 1.48495 * 109.47197 * 209.99844 * 20 18 16 23 23 H 1.48502 * 109.46730 * 329.99654 * 20 18 16 24 24 H 1.08994 * 109.47324 * 96.55301 * 1 2 3 25 25 H 1.09001 * 109.47016 * 216.55420 * 1 2 3 26 26 H 1.08995 * 109.47122 * 336.54592 * 1 2 3 27 27 H 1.08001 * 118.94105 * 179.97438 * 4 3 2 28 28 H 1.07999 * 120.53980 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.46974 * 299.99675 * 11 10 8 30 30 H 1.08994 * 109.47523 * 60.00098 * 11 10 8 31 31 H 0.97000 * 120.00227 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46708 * 299.99324 * 15 14 12 33 33 H 1.08994 * 109.47230 * 59.99405 * 15 14 12 34 34 H 0.96998 * 120.00477 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4971 1.1481 -0.0005 5 7 4.2065 0.0364 -0.0015 6 6 3.6173 -1.1462 -0.0016 7 6 2.2183 -1.2057 -0.0005 8 6 1.5132 -2.5035 -0.0017 9 8 0.3039 -2.5376 -0.1107 10 8 2.2112 -3.6495 0.1180 11 6 1.4526 -4.8874 0.1085 12 6 2.3947 -6.0549 0.2523 13 8 3.5880 -5.8625 0.3524 14 7 1.9113 -7.3129 0.2686 15 6 2.8271 -8.4478 0.4089 16 6 2.0399 -9.7328 0.3976 17 1 0.9649 -9.7067 0.2965 18 6 2.6920 -10.9417 0.5164 19 7 4.0010 -10.9736 0.6391 20 14 1.7162 -12.5346 0.5032 21 1 1.5864 -13.0240 -0.8928 22 1 2.4210 -13.5538 1.3214 23 1 0.3653 -12.2922 1.0704 24 1 -0.3634 -0.1173 -1.0209 25 1 -0.3633 -0.8255 0.6121 26 1 -0.3633 0.9427 0.4090 27 1 4.0125 2.0972 -0.0009 28 1 4.2050 -2.0522 -0.0020 29 1 0.7460 -4.8869 0.9384 30 1 0.9085 -4.9730 -0.8320 31 1 0.9570 -7.4668 0.1881 32 1 3.5346 -8.4483 -0.4202 33 1 3.3702 -8.3621 1.3500 34 1 4.4598 -11.8241 0.7223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321917192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:27 Heat of formation + Delta-G solvation = -95.382114 kcal Electronic energy + Delta-G solvation = -20364.371752 eV Core-core repulsion = 16875.932416 eV Total energy + Delta-G solvation = -3488.439337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.54803 -41.38926 -40.30109 -37.76199 -36.17992 -35.51590 -34.41579 -33.99502 -30.96919 -29.84515 -28.47458 -26.53000 -24.69413 -24.06768 -22.72899 -21.64457 -19.58494 -19.33604 -18.48044 -18.02503 -17.90297 -17.78341 -17.23535 -16.90347 -16.49088 -16.02677 -15.86774 -14.95306 -14.77044 -14.51392 -14.26254 -14.15037 -13.99394 -13.87528 -13.65055 -13.44745 -12.93859 -12.78864 -12.71707 -12.22741 -11.95517 -11.74568 -11.49622 -11.42308 -10.91568 -10.90724 -10.81314 -10.49607 -9.91909 -8.29240 -6.45623 -0.87215 -0.18776 1.06708 1.23270 1.45155 1.46570 1.56843 1.57939 2.32437 2.52705 2.54292 2.84713 2.98741 3.06328 3.16796 3.44397 3.62905 3.76084 4.05404 4.07891 4.20690 4.43083 4.64283 4.74381 4.91976 5.04797 5.10647 5.23104 5.31238 5.42705 5.63501 5.69717 5.82950 6.39401 6.63851 6.78669 6.81625 7.21450 7.36963 8.82826 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044362 B = 0.002827 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.025497 B = 9900.940806 C =10502.682061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.241 3.759 3 N -0.536 5.536 4 C 0.332 3.668 5 N -0.546 5.546 6 C 0.214 3.786 7 C -0.250 4.250 8 C 0.526 3.474 9 O -0.500 6.500 10 O -0.341 6.341 11 C 0.063 3.937 12 C 0.499 3.501 13 O -0.583 6.583 14 N -0.698 5.698 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.087 0.913 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.255 1.255 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.241 0.759 28 H 0.187 0.813 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.413 0.587 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 21.924 -1.737 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 N -0.251 5.251 4 C 0.047 3.953 5 N -0.260 5.260 6 C 0.048 3.952 7 C -0.256 4.256 8 C 0.370 3.630 9 O -0.390 6.390 10 O -0.257 6.257 11 C -0.013 4.013 12 C 0.284 3.716 13 O -0.464 6.464 14 N -0.350 5.350 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.105 0.895 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.179 1.179 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.257 0.743 28 H 0.204 0.796 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.250 0.750 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.770 22.774 -1.671 24.121 hybrid contribution -0.547 -1.976 -0.003 2.050 sum -8.317 20.798 -1.675 22.462 Atomic orbital electron populations 1.21167 0.85157 1.05300 1.05251 1.22339 0.99130 0.86027 0.83028 1.68606 1.10882 1.28679 1.16932 1.26135 0.86559 0.98404 0.84250 1.68665 1.41737 0.99174 1.16415 1.23963 0.90891 0.97474 0.82885 1.20718 0.96629 0.92449 1.15801 1.20655 0.85483 0.83970 0.72923 1.90806 1.14513 1.87605 1.46027 1.86558 1.41286 1.14492 1.83316 1.22817 0.92261 0.78665 1.07567 1.20702 0.89029 0.84871 0.76972 1.90695 1.18443 1.85865 1.51388 1.46027 1.12207 1.04906 1.71824 1.18620 0.89231 0.83312 0.94435 1.21617 0.94901 0.90584 1.52262 0.89531 1.26037 0.95944 1.03648 0.93905 1.70125 1.09595 1.27805 1.49382 0.85172 0.78666 0.77128 0.78356 1.19681 1.21140 1.17857 0.88051 0.88337 0.88616 0.74323 0.79588 0.85227 0.85217 0.75039 0.98960 0.98956 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 8.98 71.24 0.64 -1.05 16 2 C 0.24 4.62 6.87 42.94 0.29 4.91 16 3 N -0.54 -9.71 10.36 -187.02 -1.94 -11.65 16 4 C 0.33 5.24 12.27 180.84 2.22 7.46 16 5 N -0.55 -10.98 10.42 -198.93 -2.07 -13.05 16 6 C 0.21 4.58 10.90 85.08 0.93 5.51 16 7 C -0.25 -5.37 5.91 -19.92 -0.12 -5.49 16 8 C 0.53 12.47 7.85 70.33 0.55 13.02 16 9 O -0.50 -11.90 13.33 19.95 0.27 -11.63 16 10 O -0.34 -9.40 9.13 -49.83 -0.45 -9.85 16 11 C 0.06 1.62 5.95 71.24 0.42 2.04 16 12 C 0.50 18.75 7.91 87.66 0.69 19.44 16 13 O -0.58 -27.98 16.50 15.76 0.26 -27.72 16 14 N -0.70 -27.40 5.55 -466.78 -2.59 -29.99 16 15 C 0.27 14.01 5.43 85.63 0.46 14.47 16 16 C -0.56 -29.08 9.28 25.60 0.24 -28.85 16 17 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 18 C 0.00 0.24 5.46 84.65 0.46 0.70 16 19 N -0.93 -54.98 13.29 21.44 0.28 -54.70 16 20 Si 0.98 41.24 29.54 68.60 2.03 43.26 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.10 1.66 5.98 -2.39 -0.01 1.64 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.24 1.70 8.06 -2.91 -0.02 1.67 16 28 H 0.19 3.95 7.73 -2.91 -0.02 3.93 16 29 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.41 12.81 8.32 -92.71 -0.77 12.04 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.72 311.06 2.96 -69.77 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.38 Total: 13.39 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 6.80 Total: 32.17 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -6.32 Total: -109.39 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: 0.07 Total: -49.20 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -72.72 2.96 -69.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321917192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.616 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds