Wall clock time and date at job start Tue Mar 31 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34661 * 117.00131 * 2 1 4 4 O 1.21405 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.48221 * 119.99933 * 180.02562 * 3 2 1 6 6 C 1.39702 * 120.00270 * 180.02562 * 5 3 2 7 7 N 1.31806 * 119.99260 * 179.97438 * 6 5 3 8 8 C 1.32942 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.48320 * 119.99595 * 179.97438 * 8 7 6 10 10 O 1.21491 * 120.00383 * 173.55202 * 9 8 7 11 11 N 1.34783 * 119.99901 * 353.28039 * 9 8 7 12 12 C 1.46506 * 119.99794 * 354.61984 * 11 9 8 13 13 C 1.46502 * 119.99985 * 174.62563 * 11 9 8 14 14 C 1.50696 * 109.47135 * 89.99982 * 13 11 9 15 15 H 1.08009 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.37873 * 120.00326 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00652 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99535 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47547 * 90.00206 * 18 16 14 20 20 H 1.48506 * 109.46825 * 210.00311 * 18 16 14 21 21 H 1.48497 * 109.47067 * 329.99855 * 18 16 14 22 22 C 1.39640 * 120.00871 * 0.25207 * 8 7 6 23 23 N 1.31820 * 120.00356 * 359.47870 * 22 8 7 24 24 H 1.09000 * 109.46878 * 299.99890 * 1 2 3 25 25 H 1.08994 * 109.47152 * 59.99872 * 1 2 3 26 26 H 1.08997 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00227 * 359.95212 * 6 5 3 28 28 H 1.09000 * 109.46940 * 85.06438 * 12 11 9 29 29 H 1.09004 * 109.46910 * 205.06155 * 12 11 9 30 30 H 1.08993 * 109.47214 * 325.06368 * 12 11 9 31 31 H 1.09004 * 109.46769 * 209.99627 * 13 11 9 32 32 H 1.08997 * 109.46836 * 329.99535 * 13 11 9 33 33 H 0.96996 * 120.00538 * 179.97438 * 17 16 14 34 34 H 1.08001 * 119.99623 * 179.72471 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4022 2.2180 0.0005 5 6 3.5436 1.2773 -0.0006 6 6 4.1779 2.5220 0.0000 7 7 5.4942 2.5908 0.0000 8 6 6.2180 1.4757 0.0000 9 6 7.6992 1.5531 -0.0006 10 8 8.3606 0.5409 0.1175 11 7 8.3116 2.7460 -0.1377 12 6 7.5198 3.9495 -0.4040 13 6 9.7690 2.8389 -0.0206 14 6 10.3953 2.6452 -1.3775 15 1 9.7704 2.4699 -2.2407 16 6 11.7662 2.6907 -1.5168 17 7 12.3130 2.5211 -2.7008 18 14 12.8472 2.9932 -0.0236 19 1 13.2028 1.6940 0.6015 20 1 14.0862 3.6960 -0.4437 21 1 12.1121 3.8302 0.9583 22 6 5.5841 0.2315 -0.0054 23 7 4.2677 0.1624 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.5898 3.4279 0.0000 28 1 7.1581 4.3622 0.5378 29 1 8.1412 4.6887 -0.9097 30 1 6.6712 3.6932 -1.0381 31 1 10.0403 3.8205 0.3680 32 1 10.1288 2.0668 0.6594 33 1 13.2774 2.5535 -2.7989 34 1 6.1723 -0.6742 -0.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323345874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:07 Heat of formation + Delta-G solvation = -63.707212 kcal Electronic energy + Delta-G solvation = -20919.452849 eV Core-core repulsion = 17432.387039 eV Total energy + Delta-G solvation = -3487.065810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.81862 -41.40802 -40.33687 -37.72614 -36.97136 -35.85697 -34.61820 -33.27122 -30.63220 -29.10051 -27.80631 -26.87301 -25.92154 -24.54758 -22.92420 -21.20839 -19.82815 -19.15465 -18.98381 -18.28993 -18.05051 -17.68877 -17.13057 -16.73588 -16.37452 -16.20742 -15.79525 -15.37191 -14.90151 -14.50360 -14.31006 -14.23519 -13.95941 -13.83906 -13.55327 -13.05580 -13.03116 -12.75256 -12.48900 -12.19797 -12.14480 -11.99263 -11.87300 -11.74731 -11.43658 -10.85624 -10.81767 -10.36498 -9.51542 -8.32706 -6.39187 -1.38310 -0.32411 0.86005 1.27254 1.36666 1.40402 1.48756 1.67042 1.90819 2.33048 2.45777 2.62154 2.67612 3.00260 3.01762 3.47125 3.61387 3.72590 4.26549 4.32676 4.35772 4.47546 4.68798 4.70823 4.75377 4.86779 4.92186 5.05279 5.12579 5.42078 5.49998 5.62349 6.08764 6.21311 6.41986 6.46983 6.62298 7.01854 7.25799 8.84250 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.046451 B = 0.003469 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.644785 B = 8069.497205 C = 8285.511009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.536 3.464 4 O -0.498 6.498 5 C 0.051 3.949 6 C 0.123 3.877 7 N -0.404 5.404 8 C 0.069 3.931 9 C 0.550 3.450 10 O -0.561 6.561 11 N -0.579 5.579 12 C 0.090 3.910 13 C 0.221 3.779 14 C -0.539 4.539 15 H 0.028 0.972 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.949 3.051 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.235 1.235 22 C 0.107 3.893 23 N -0.394 5.394 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.222 0.778 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.269 0.731 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 0.054 8.559 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.377 3.623 4 O -0.386 6.386 5 C -0.090 4.090 6 C -0.038 4.038 7 N -0.121 5.121 8 C -0.073 4.073 9 C 0.335 3.665 10 O -0.440 6.440 11 N -0.308 5.308 12 C -0.052 4.052 13 C 0.100 3.900 14 C -0.577 4.577 15 H 0.046 0.954 16 C -0.186 4.186 17 N -0.585 5.585 18 Si 0.771 3.229 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.158 1.158 22 C -0.055 4.055 23 N -0.111 5.111 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.239 0.761 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -22.700 -0.150 8.530 24.250 hybrid contribution 0.737 -0.090 -0.106 0.750 sum -21.962 -0.240 8.424 23.524 Atomic orbital electron populations 1.23743 0.73336 1.06242 1.03357 1.86666 1.25798 1.30786 1.82625 1.20349 0.86788 0.82329 0.72815 1.90869 1.65607 1.36332 1.45770 1.21605 0.92895 0.92072 1.02442 1.24466 0.90188 0.98806 0.90369 1.69192 1.06485 1.28592 1.07846 1.22421 0.94992 0.92107 0.97759 1.18061 0.85843 0.83947 0.78628 1.90769 1.65719 1.35359 1.52195 1.47906 1.08489 1.08222 1.66137 1.22203 0.95087 0.85441 1.02436 1.19555 0.76581 0.98123 0.95791 1.21487 0.92453 1.49885 0.93890 0.95391 1.25863 0.99407 0.93979 0.99371 1.70045 1.11976 1.51151 1.25346 0.85700 0.78420 0.79382 0.79382 1.19839 1.20243 1.15753 1.23949 0.89890 0.98912 0.92700 1.68629 1.06381 1.30160 1.05926 0.90914 0.91035 0.85006 0.76122 0.90061 0.91637 0.89387 0.92270 0.95268 0.92190 0.78459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.34 -6.48 10.39 -55.70 -0.58 -7.05 16 3 C 0.54 11.00 7.96 70.48 0.56 11.56 16 4 O -0.50 -10.81 16.13 20.14 0.32 -10.48 16 5 C 0.05 1.13 6.76 41.99 0.28 1.42 16 6 C 0.12 2.45 10.77 85.05 0.92 3.37 16 7 N -0.40 -10.19 6.36 -183.28 -1.17 -11.36 16 8 C 0.07 2.09 6.56 42.00 0.28 2.37 16 9 C 0.55 22.11 7.65 86.93 0.66 22.78 16 10 O -0.56 -26.59 16.00 -3.69 -0.06 -26.65 16 11 N -0.58 -23.55 2.86 -854.02 -2.44 -25.99 16 12 C 0.09 2.78 9.13 127.77 1.17 3.94 16 13 C 0.22 10.45 4.16 85.63 0.36 10.81 16 14 C -0.54 -31.20 9.94 25.60 0.25 -30.95 16 15 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 16 C 0.01 0.70 5.47 84.65 0.46 1.16 16 17 N -0.95 -59.22 13.96 21.44 0.30 -58.92 16 18 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.23 -9.43 6.54 99.48 0.65 -8.78 16 22 C 0.11 2.92 10.77 85.03 0.92 3.84 16 23 N -0.39 -9.90 10.27 -183.37 -1.88 -11.79 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.22 2.95 7.64 -2.91 -0.02 2.93 16 28 H 0.08 2.05 8.02 -2.39 -0.02 2.03 16 29 H 0.06 2.07 8.03 -2.38 -0.02 2.05 16 30 H 0.09 2.53 5.75 -2.39 -0.01 2.51 16 31 H 0.06 2.53 7.13 -2.38 -0.02 2.52 16 32 H 0.03 1.44 6.93 -2.39 -0.02 1.42 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.20 5.14 7.66 -2.91 -0.02 5.11 16 Total: -1.00 -74.69 305.87 4.52 -70.17 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.08 Total: 5.27 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 7.05 Total: 31.76 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.19 Total: -108.05 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.31 Total: -44.18 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -74.69 4.52 -70.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323345874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.461 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds