Wall clock time and date at job start Tue Mar 31 2020 01:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99656 * 2 1 4 4 O 1.20822 * 120.00512 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99888 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47336 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47306 * 180.02562 * 6 5 3 8 8 C 1.36789 * 119.99668 * 72.82672 * 7 6 5 9 9 H 1.08006 * 119.99963 * 64.32960 * 8 7 6 10 10 C 1.39107 * 120.00071 * 244.59618 * 8 7 6 11 11 N 1.31328 * 119.99689 * 147.79632 * 10 8 7 12 12 Si 1.86800 * 120.00122 * 327.79943 * 10 8 7 13 13 H 1.48499 * 109.46957 * 24.64026 * 12 10 8 14 14 H 1.48500 * 109.46872 * 144.63948 * 12 10 8 15 15 H 1.48494 * 109.46882 * 264.63782 * 12 10 8 16 16 C 1.34774 * 119.99928 * 252.82718 * 7 6 5 17 17 O 1.21570 * 119.99645 * 185.98427 * 16 7 6 18 18 C 1.47980 * 120.00339 * 5.98658 * 16 7 6 19 19 C 1.40206 * 121.14959 * 214.50181 * 18 16 7 20 20 C 1.38461 * 117.80564 * 179.78238 * 19 18 16 21 21 N 1.31940 * 119.98135 * 0.49993 * 20 19 18 22 22 N 1.28280 * 122.53777 * 359.73896 * 21 20 19 23 23 C 1.31892 * 122.33572 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46609 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47042 * 299.99557 * 1 2 3 26 26 H 1.08996 * 109.47060 * 59.99932 * 1 2 3 27 27 H 1.09007 * 109.46860 * 59.99975 * 5 3 2 28 28 H 1.09000 * 109.47318 * 300.00276 * 5 3 2 29 29 H 1.09007 * 109.46975 * 60.00280 * 6 5 3 30 30 H 1.09000 * 109.47334 * 300.00500 * 6 5 3 31 31 H 0.97003 * 120.00003 * 180.02562 * 11 10 8 32 32 H 1.07995 * 121.09987 * 0.02562 * 19 18 16 33 33 H 1.08005 * 120.00720 * 180.21003 * 20 19 18 34 34 H 1.07998 * 120.17835 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1644 2.5048 -1.1319 9 1 6.0517 3.1068 -2.0215 10 6 7.0184 1.4067 -1.1387 11 7 7.1937 0.7181 -2.2432 12 14 7.9156 0.9116 0.4231 13 1 7.1584 1.3980 1.6043 14 1 8.0274 -0.5680 0.4817 15 1 9.2741 1.5111 0.4246 16 6 6.1180 3.1989 1.1147 17 8 7.3215 3.3678 1.0849 18 6 5.3722 3.4104 2.3752 19 6 5.7536 4.4065 3.2851 20 6 5.0038 4.5471 4.4407 21 7 3.9750 3.7508 4.6600 22 7 3.6235 2.8343 3.8342 23 6 4.2659 2.6204 2.7023 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.9564 0.7806 -0.8892 28 1 3.9558 0.7810 0.8908 29 1 3.6100 3.2368 0.8894 30 1 3.6107 3.2357 -0.8906 31 1 7.7889 -0.0478 -2.2479 32 1 6.6018 5.0457 3.0894 33 1 5.2641 5.3053 5.1645 34 1 3.9399 1.8385 2.0325 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330667250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:30 Heat of formation + Delta-G solvation = -25.061909 kcal Electronic energy + Delta-G solvation = -22210.807747 eV Core-core repulsion = 18725.417723 eV Total energy + Delta-G solvation = -3485.390024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10843 -40.27723 -38.96510 -36.53513 -35.39267 -33.26532 -32.65863 -32.04293 -30.92533 -27.68881 -26.30626 -24.67274 -24.29916 -23.27327 -20.74306 -19.92362 -18.16906 -17.74102 -17.28280 -16.77844 -16.64165 -16.13509 -16.08782 -15.60352 -14.83102 -14.48876 -14.28613 -13.94410 -13.78180 -13.29003 -13.15919 -13.03706 -12.54616 -12.30743 -12.06973 -11.76983 -11.27563 -10.92155 -10.76978 -10.71342 -10.53398 -10.34813 -10.15119 -9.93886 -9.85897 -9.48103 -9.14926 -8.61288 -7.76786 -6.59529 -4.44534 0.66229 0.99673 2.36612 2.78094 3.06664 3.27505 3.41692 3.59284 3.82773 4.07507 4.19494 4.25589 4.57697 4.61613 4.75232 4.90840 5.04969 5.10847 5.12957 5.18292 5.25042 5.30549 5.39082 5.55250 5.70095 5.86222 6.01554 6.16135 6.23776 6.32540 6.51482 7.42666 7.84763 7.90810 8.36970 8.53427 8.77494 9.00526 9.42453 10.38539 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.009827 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.165235 B = 2848.696631 C = 4703.869340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.509 6.509 5 C -0.138 4.138 6 C 0.110 3.890 7 N -0.444 5.444 8 C -0.361 4.361 9 H 0.098 0.902 10 C 0.091 3.909 11 N -0.829 5.829 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.314 1.314 15 H -0.275 1.275 16 C 0.509 3.491 17 O -0.536 6.536 18 C -0.107 4.107 19 C -0.081 4.081 20 C 0.036 3.964 21 N -0.247 5.247 22 N -0.246 5.246 23 C 0.047 3.953 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.278 0.722 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 0.535 6.442 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.176 4.176 6 C -0.014 4.014 7 N -0.165 5.165 8 C -0.486 4.486 9 H 0.116 0.884 10 C -0.123 4.123 11 N -0.459 5.459 12 Si 0.749 3.251 13 H -0.198 1.198 14 H -0.244 1.244 15 H -0.202 1.202 16 C 0.298 3.702 17 O -0.418 6.418 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.128 4.128 21 N -0.090 5.090 22 N -0.087 5.087 23 C -0.117 4.117 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.353 0.338 7.248 11.837 hybrid contribution 1.617 0.115 -0.320 1.652 sum -7.736 0.453 6.928 10.395 Atomic orbital electron populations 1.23236 0.76758 1.03433 1.02476 1.86541 1.23151 1.33698 1.84172 1.23840 0.92055 0.81220 0.71837 1.90653 1.67311 1.36232 1.45471 1.22009 0.86631 1.01741 1.07239 1.21750 0.83185 0.93029 1.03444 1.43429 1.04088 1.58614 1.10331 1.18544 1.28667 1.12161 0.89226 0.88444 1.25563 0.95808 0.93267 0.97626 1.69917 1.31738 1.14612 1.29626 0.86286 0.81988 0.73502 0.83297 1.19763 1.24398 1.20158 1.18357 0.87851 0.80341 0.83632 1.90435 1.13908 1.53279 1.84144 1.21811 0.96201 0.96406 0.97704 1.22529 0.99272 0.96600 0.92666 1.24244 0.92844 0.98985 0.96737 1.72815 1.12602 1.00608 1.22958 1.72988 1.23889 1.11216 1.00633 1.25123 0.91882 0.99004 0.95735 0.88336 0.91927 0.91975 0.84771 0.88026 0.90736 0.89558 0.91209 0.82522 0.80839 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.07 10.57 -39.25 -0.41 -5.49 16 3 C 0.47 7.37 7.96 36.01 0.29 7.65 16 4 O -0.51 -8.91 15.73 -18.75 -0.29 -9.20 16 5 C -0.14 -2.26 5.17 -27.88 -0.14 -2.41 16 6 C 0.11 2.00 4.14 -4.04 -0.02 1.98 16 7 N -0.44 -9.75 2.42 -115.84 -0.28 -10.03 16 8 C -0.36 -9.14 9.01 -15.02 -0.14 -9.28 16 9 H 0.10 2.64 8.06 -52.48 -0.42 2.21 16 10 C 0.09 2.38 5.50 -17.44 -0.10 2.29 16 11 N -0.83 -22.10 13.95 55.50 0.77 -21.33 16 12 Si 0.92 22.77 25.27 -169.99 -4.30 18.47 16 13 H -0.27 -6.68 4.91 56.52 0.28 -6.40 16 14 H -0.31 -7.60 7.11 56.52 0.40 -7.19 16 15 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 16 C 0.51 11.29 4.86 -12.27 -0.06 11.23 16 17 O -0.54 -13.51 12.71 5.30 0.07 -13.44 16 18 C -0.11 -1.98 5.25 -104.57 -0.55 -2.53 16 19 C -0.08 -1.25 9.84 -38.76 -0.38 -1.63 16 20 C 0.04 0.49 11.30 -17.42 -0.20 0.29 16 21 N -0.25 -4.08 11.48 30.52 0.35 -3.73 16 22 N -0.25 -4.36 11.49 30.79 0.35 -4.01 16 23 C 0.05 0.82 8.74 -16.93 -0.15 0.67 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 27 H 0.13 2.34 7.97 -51.93 -0.41 1.92 16 28 H 0.10 1.56 6.16 -51.93 -0.32 1.24 16 29 H 0.07 1.29 4.77 -51.93 -0.25 1.04 16 30 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.16 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.18 2.94 3.42 -52.49 -0.18 2.76 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -31.41 292.38 -3.08 -34.49 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.38 Total: 0.16 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.37 Total: 9.70 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.20 Total: -39.10 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.64 Total: -28.13 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.30 Total: 18.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.41 -3.08 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330667250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.429 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds