Wall clock time and date at job start Tue Mar 31 2020 01:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99656 * 2 1 4 4 O 1.20822 * 120.00512 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99888 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47336 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47306 * 180.02562 * 6 5 3 8 8 C 1.36789 * 119.99668 * 72.82672 * 7 6 5 9 9 H 1.08006 * 119.99963 * 64.32960 * 8 7 6 10 10 C 1.39107 * 120.00071 * 244.59618 * 8 7 6 11 11 N 1.31328 * 119.99689 * 147.79632 * 10 8 7 12 12 Si 1.86800 * 120.00122 * 327.79943 * 10 8 7 13 13 H 1.48499 * 109.46957 * 24.64026 * 12 10 8 14 14 H 1.48500 * 109.46872 * 144.63948 * 12 10 8 15 15 H 1.48494 * 109.46882 * 264.63782 * 12 10 8 16 16 C 1.34774 * 119.99928 * 252.82718 * 7 6 5 17 17 O 1.21570 * 119.99645 * 185.98427 * 16 7 6 18 18 C 1.47980 * 120.00339 * 5.98658 * 16 7 6 19 19 C 1.40206 * 121.14959 * 214.50181 * 18 16 7 20 20 C 1.38461 * 117.80564 * 179.78238 * 19 18 16 21 21 N 1.31940 * 119.98135 * 0.49993 * 20 19 18 22 22 N 1.28280 * 122.53777 * 359.73896 * 21 20 19 23 23 C 1.31892 * 122.33572 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46609 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47042 * 299.99557 * 1 2 3 26 26 H 1.08996 * 109.47060 * 59.99932 * 1 2 3 27 27 H 1.09007 * 109.46860 * 59.99975 * 5 3 2 28 28 H 1.09000 * 109.47318 * 300.00276 * 5 3 2 29 29 H 1.09007 * 109.46975 * 60.00280 * 6 5 3 30 30 H 1.09000 * 109.47334 * 300.00500 * 6 5 3 31 31 H 0.97003 * 120.00003 * 180.02562 * 11 10 8 32 32 H 1.07995 * 121.09987 * 0.02562 * 19 18 16 33 33 H 1.08005 * 120.00720 * 180.21003 * 20 19 18 34 34 H 1.07998 * 120.17835 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1644 2.5048 -1.1319 9 1 6.0517 3.1068 -2.0215 10 6 7.0184 1.4067 -1.1387 11 7 7.1937 0.7181 -2.2432 12 14 7.9156 0.9116 0.4231 13 1 7.1584 1.3980 1.6043 14 1 8.0274 -0.5680 0.4817 15 1 9.2741 1.5111 0.4246 16 6 6.1180 3.1989 1.1147 17 8 7.3215 3.3678 1.0849 18 6 5.3722 3.4104 2.3752 19 6 5.7536 4.4065 3.2851 20 6 5.0038 4.5471 4.4407 21 7 3.9750 3.7508 4.6600 22 7 3.6235 2.8343 3.8342 23 6 4.2659 2.6204 2.7023 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.9564 0.7806 -0.8892 28 1 3.9558 0.7810 0.8908 29 1 3.6100 3.2368 0.8894 30 1 3.6107 3.2357 -0.8906 31 1 7.7889 -0.0478 -2.2479 32 1 6.6018 5.0457 3.0894 33 1 5.2641 5.3053 5.1645 34 1 3.9399 1.8385 2.0325 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330667250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:30 Heat of formation + Delta-G solvation = -46.943059 kcal Electronic energy + Delta-G solvation = -22211.756585 eV Core-core repulsion = 18725.417723 eV Total energy + Delta-G solvation = -3486.338862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.48840 -41.50345 -40.59432 -37.81426 -37.01321 -34.95426 -34.07230 -33.53228 -32.42853 -28.72329 -27.94693 -26.09643 -25.62933 -24.78535 -22.12187 -21.47837 -19.81891 -19.06830 -18.72018 -18.03719 -18.00577 -17.62395 -17.31811 -17.22610 -16.26428 -16.05787 -15.80614 -15.54657 -15.21767 -14.83837 -14.52352 -14.37363 -13.95581 -13.83294 -13.48329 -13.15484 -12.85599 -12.61778 -12.41098 -12.00223 -11.77366 -11.76623 -11.63780 -11.38352 -11.23680 -11.06665 -10.89367 -10.45566 -9.60729 -8.59659 -6.45646 -0.69109 -0.23514 1.11392 1.20905 1.28443 1.42089 1.63564 1.87620 2.23667 2.38931 2.55351 2.69576 2.96503 3.29308 3.45325 3.52590 3.70712 3.83252 3.85039 4.03544 4.15295 4.35381 4.37012 4.39557 4.56867 4.72843 4.74644 4.75235 4.91850 5.07911 5.33820 5.50934 5.93528 6.50336 6.66784 6.70541 7.04356 7.50176 7.59221 8.41861 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.009827 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.165235 B = 2848.696631 C = 4703.869340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.477 3.523 4 O -0.528 6.528 5 C -0.133 4.133 6 C 0.115 3.885 7 N -0.453 5.453 8 C -0.362 4.362 9 H 0.072 0.928 10 C 0.066 3.934 11 N -0.858 5.858 12 Si 0.955 3.045 13 H -0.268 1.268 14 H -0.306 1.306 15 H -0.299 1.299 16 C 0.512 3.488 17 O -0.572 6.572 18 C -0.134 4.134 19 C -0.067 4.067 20 C 0.056 3.944 21 N -0.259 5.259 22 N -0.261 5.261 23 C 0.049 3.951 24 H 0.132 0.868 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.282 0.718 32 H 0.176 0.824 33 H 0.227 0.773 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 0.879 8.639 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.321 3.679 4 O -0.418 6.418 5 C -0.171 4.171 6 C -0.008 4.008 7 N -0.172 5.172 8 C -0.488 4.488 9 H 0.090 0.910 10 C -0.145 4.145 11 N -0.490 5.490 12 Si 0.787 3.213 13 H -0.194 1.194 14 H -0.236 1.236 15 H -0.227 1.227 16 C 0.302 3.698 17 O -0.457 6.457 18 C -0.148 4.148 19 C -0.097 4.097 20 C -0.108 4.108 21 N -0.101 5.101 22 N -0.101 5.101 23 C -0.116 4.116 24 H 0.150 0.850 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.243 0.757 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.560 0.650 9.449 14.185 hybrid contribution 1.905 0.144 -0.911 2.116 sum -8.655 0.795 8.538 12.184 Atomic orbital electron populations 1.23601 0.74475 1.05826 1.02747 1.86516 1.25327 1.32457 1.83602 1.23498 0.91547 0.81487 0.71385 1.90646 1.67620 1.36944 1.46584 1.21836 0.87667 1.00342 1.07297 1.21732 0.80701 0.94490 1.03882 1.43503 1.05354 1.58819 1.09569 1.18330 1.29087 1.11686 0.89708 0.91009 1.25884 0.96297 0.93596 0.98679 1.69932 1.33009 1.15550 1.30550 0.85697 0.80038 0.73396 0.82154 1.19363 1.23580 1.22687 1.18745 0.87519 0.78958 0.84606 1.90401 1.15570 1.54666 1.85037 1.21535 0.97193 0.98949 0.97139 1.22905 0.99389 0.95223 0.92147 1.24961 0.90734 0.98550 0.96535 1.72763 1.13658 1.00779 1.22855 1.73001 1.24343 1.12107 1.00665 1.25105 0.91519 0.98999 0.95952 0.84962 0.91633 0.91783 0.85926 0.86849 0.89442 0.89921 0.90745 0.80614 0.75666 0.80264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.67 10.57 -51.38 -0.54 -10.22 16 3 C 0.48 14.57 7.96 71.24 0.57 15.13 16 4 O -0.53 -17.96 15.73 21.98 0.35 -17.62 16 5 C -0.13 -4.32 5.17 29.85 0.15 -4.17 16 6 C 0.12 4.16 4.14 86.38 0.36 4.51 16 7 N -0.45 -19.96 2.42 -638.68 -1.54 -21.50 16 8 C -0.36 -18.78 9.01 84.13 0.76 -18.02 16 9 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 10 C 0.07 3.52 5.50 84.98 0.47 3.99 16 11 N -0.86 -46.68 13.95 21.69 0.30 -46.38 16 12 Si 0.95 47.22 25.27 68.60 1.73 48.95 16 13 H -0.27 -12.96 4.91 99.48 0.49 -12.47 16 14 H -0.31 -14.46 7.11 99.48 0.71 -13.76 16 15 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 16 C 0.51 22.40 4.86 86.83 0.42 22.82 16 17 O -0.57 -28.75 12.71 -3.94 -0.05 -28.80 16 18 C -0.13 -4.73 5.25 -19.83 -0.10 -4.83 16 19 C -0.07 -1.84 9.84 22.80 0.22 -1.62 16 20 C 0.06 1.28 11.30 84.73 0.96 2.24 16 21 N -0.26 -7.64 11.48 -57.35 -0.66 -8.30 16 22 N -0.26 -8.61 11.49 -56.49 -0.65 -9.26 16 23 C 0.05 1.63 8.74 85.07 0.74 2.37 16 24 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.21 8.13 -2.39 -0.02 1.20 16 26 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 27 H 0.12 4.31 7.97 -2.38 -0.02 4.30 16 28 H 0.11 3.39 6.16 -2.39 -0.01 3.38 16 29 H 0.09 2.96 4.77 -2.38 -0.01 2.94 16 30 H 0.08 3.02 8.10 -2.39 -0.02 3.00 16 31 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.18 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.18 5.74 3.42 -2.91 -0.01 5.73 16 Total: -1.00 -68.21 292.38 5.61 -62.60 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 0.93 Total: 6.38 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 5.74 Total: 24.13 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.55 Total: -85.44 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.25 Total: -56.63 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.73 Total: 48.95 kcal Total: -68.21 5.61 -62.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330667250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.657 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds