Wall clock time and date at job start Tue Mar 31 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34644 * 116.99750 * 2 1 4 4 O 1.21395 * 120.00174 * 359.97438 * 3 2 1 5 5 C 1.48359 * 119.99789 * 179.97438 * 3 2 1 6 6 C 1.39104 * 120.51306 * 180.02562 * 5 3 2 7 7 C 1.39868 * 118.18758 * 180.02562 * 6 5 3 8 8 N 1.38512 * 120.51568 * 179.97438 * 7 6 5 9 9 C 1.47487 * 110.99793 * 275.97311 * 8 7 6 10 10 C 1.53518 * 87.92898 * 221.29522 * 9 8 7 11 11 O 1.42899 * 114.16889 * 272.37788 * 10 9 8 12 12 C 1.50696 * 114.17071 * 139.67004 * 10 9 8 13 13 H 1.08001 * 120.00306 * 266.15995 * 12 10 9 14 14 C 1.37875 * 119.99877 * 86.15619 * 12 10 9 15 15 N 1.31513 * 119.99945 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46890 * 90.00391 * 16 14 12 18 18 H 1.48496 * 109.47230 * 210.00097 * 16 14 12 19 19 H 1.48498 * 109.47377 * 330.00343 * 16 14 12 20 20 C 1.47476 * 110.99875 * 179.97438 * 8 7 6 21 21 N 1.32831 * 118.97378 * 359.97438 * 7 6 5 22 22 C 1.31847 * 120.91469 * 0.02562 * 21 7 6 23 23 N 1.31550 * 122.01955 * 359.71473 * 22 21 7 24 24 H 1.08999 * 109.47008 * 60.00031 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47465 * 300.00021 * 1 2 3 27 27 H 1.08005 * 120.90485 * 359.97438 * 6 5 3 28 28 H 1.08999 * 113.47307 * 336.05632 * 9 8 7 29 29 H 1.08996 * 113.47445 * 106.52802 * 9 8 7 30 30 H 0.96700 * 114.00030 * 273.84161 * 11 10 9 31 31 H 0.97007 * 119.99719 * 179.97438 * 15 14 12 32 32 H 1.08998 * 113.47696 * 253.46514 * 20 8 7 33 33 H 1.09000 * 113.48196 * 23.94214 * 20 8 7 34 34 H 1.08006 * 118.99273 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4020 2.2178 -0.0005 5 6 3.5447 1.2774 0.0006 6 6 4.1873 2.5111 0.0011 7 6 5.5859 2.5276 0.0011 8 7 6.2751 3.7290 0.0011 9 6 6.4138 4.2588 -1.3684 10 6 7.8548 4.6498 -1.0114 11 8 7.9799 5.9434 -0.4174 12 6 8.8531 4.3979 -2.1118 13 1 9.4072 3.4712 -2.1366 14 6 9.0591 5.3504 -3.0871 15 7 8.3847 6.4791 -3.0568 16 14 10.2971 5.0384 -4.4507 17 1 9.6187 4.3742 -5.5927 18 1 10.8735 6.3307 -4.9011 19 1 11.3830 4.1623 -3.9425 20 6 7.7324 3.5024 0.0017 21 7 6.2430 1.3732 0.0011 22 6 5.5950 0.2249 0.0006 23 7 4.2809 0.1656 0.0056 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.6217 3.4312 0.0007 28 1 6.3506 3.4909 -2.1394 29 1 5.7691 5.1141 -1.5704 30 1 8.0568 6.6643 -1.0573 31 1 8.5299 7.1494 -3.7428 32 1 8.2048 3.7170 0.9602 33 1 8.0212 2.5327 -0.4037 34 1 6.1605 -0.6953 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330816334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:37 Heat of formation + Delta-G solvation = -23.704322 kcal Electronic energy + Delta-G solvation = -21300.269219 eV Core-core repulsion = 17814.938065 eV Total energy + Delta-G solvation = -3485.331155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50244 -40.39280 -39.07153 -36.72135 -34.92050 -33.25624 -32.20539 -31.85194 -28.43910 -27.86334 -25.76777 -25.31925 -24.35271 -23.25468 -21.15042 -18.98536 -18.68334 -17.87052 -17.15887 -16.73559 -16.65567 -15.67237 -15.41113 -15.25874 -15.03575 -14.75877 -14.25590 -13.85305 -13.81503 -13.37929 -13.02378 -12.37221 -12.24611 -11.98039 -11.55803 -11.15465 -11.06984 -11.03177 -11.01648 -10.91927 -10.62605 -10.45476 -10.24372 -9.80558 -9.50398 -9.36223 -8.79989 -8.55013 -8.15557 -6.39361 -4.49187 0.33776 0.96924 2.26794 2.28502 3.14378 3.22600 3.26171 3.71496 3.84469 3.96991 4.17400 4.30949 4.75607 4.83657 4.86304 4.94831 4.98043 5.18391 5.30380 5.48828 5.70738 5.83207 5.90315 6.01412 6.12760 6.21933 6.54315 6.58532 6.74563 6.93014 7.18156 7.44677 7.61145 7.64396 7.83128 8.05151 8.54414 9.21688 9.52018 10.67217 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.003973 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.826381 B = 7045.916625 C = 7119.431252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.333 6.333 3 C 0.527 3.473 4 O -0.489 6.489 5 C 0.144 3.856 6 C -0.159 4.159 7 C 0.342 3.658 8 N -0.431 5.431 9 C -0.003 4.003 10 C 0.251 3.749 11 O -0.568 6.568 12 C -0.534 4.534 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.908 3.092 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.016 3.984 21 N -0.529 5.529 22 C 0.313 3.687 23 N -0.503 5.503 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.393 0.607 31 H 0.274 0.726 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -10.616 3.475 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.247 6.247 3 C 0.369 3.631 4 O -0.374 6.374 5 C 0.001 3.999 6 C -0.184 4.184 7 C 0.101 3.899 8 N -0.151 5.151 9 C -0.129 4.129 10 C 0.209 3.791 11 O -0.380 6.380 12 C -0.572 4.572 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.735 3.265 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.195 1.195 20 C -0.111 4.111 21 N -0.249 5.249 22 C 0.023 3.977 23 N -0.221 5.221 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.179 0.821 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.249 0.751 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.182 -10.888 4.450 15.557 hybrid contribution 0.061 0.443 -1.703 1.761 sum -10.121 -10.445 2.747 14.801 Atomic orbital electron populations 1.23375 0.75900 1.04045 1.02757 1.86671 1.23309 1.31458 1.83294 1.20729 0.87554 0.81883 0.72943 1.90870 1.65651 1.36159 1.44738 1.20108 0.91075 0.90019 0.98732 1.22460 0.94895 0.99468 1.01612 1.21252 0.90680 0.91124 0.86842 1.66380 1.10377 1.13108 1.25189 1.24999 1.04072 0.99174 0.84687 1.19392 0.88871 0.82019 0.88848 1.86056 1.95564 1.17111 1.39285 1.21516 1.23267 1.03853 1.08581 0.91018 1.25091 0.95510 0.94606 0.97903 1.69277 1.41194 1.07558 1.35744 0.86331 0.81056 0.77950 0.81207 1.20372 1.20818 1.19455 1.24228 0.84395 1.00829 1.01682 1.68500 1.42023 0.98933 1.15417 1.24872 0.86722 0.95960 0.90159 1.68394 1.08643 1.30656 1.14438 0.91618 0.87690 0.91659 0.82076 0.91193 0.89841 0.75112 0.91593 0.90318 0.88011 0.78000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.33 -4.21 10.42 -40.34 -0.42 -4.63 16 3 C 0.53 7.73 7.97 34.90 0.28 8.01 16 4 O -0.49 -7.80 16.20 -19.18 -0.31 -8.12 16 5 C 0.14 2.25 6.78 -82.73 -0.56 1.69 16 6 C -0.16 -2.66 9.65 -38.65 -0.37 -3.03 16 7 C 0.34 6.29 5.86 -154.85 -0.91 5.38 16 8 N -0.43 -8.89 6.43 -182.26 -1.17 -10.06 16 9 C 0.00 -0.07 7.07 -7.47 -0.05 -0.13 16 10 C 0.25 6.07 1.57 -91.22 -0.14 5.93 16 11 O -0.57 -14.65 13.54 -35.23 -0.48 -15.13 16 12 C -0.53 -13.61 8.69 -34.44 -0.30 -13.91 16 13 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 15 N -0.90 -23.01 11.02 55.43 0.61 -22.40 16 16 Si 0.91 19.65 29.54 -169.99 -5.02 14.63 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C 0.02 0.34 6.81 -7.45 -0.05 0.29 16 21 N -0.53 -9.02 8.34 -13.82 -0.12 -9.14 16 22 C 0.31 4.43 12.27 -92.32 -1.13 3.30 16 23 N -0.50 -7.55 10.25 -11.23 -0.12 -7.66 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.16 2.61 7.73 -52.48 -0.41 2.20 16 28 H 0.07 1.54 7.85 -51.93 -0.41 1.13 16 29 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 30 H 0.39 10.28 6.33 45.56 0.29 10.57 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.10 2.11 6.65 -51.93 -0.35 1.77 16 34 H 0.20 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -28.36 303.12 -7.67 -36.03 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -2.95 Total: 11.30 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -2.27 Total: 10.60 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.79 Total: -49.26 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.21 Total: -27.87 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.36 -7.67 -36.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330816334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.328 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds