Wall clock time and date at job start Tue Mar 31 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34644 * 116.99750 * 2 1 4 4 O 1.21395 * 120.00174 * 359.97438 * 3 2 1 5 5 C 1.48359 * 119.99789 * 179.97438 * 3 2 1 6 6 C 1.39104 * 120.51306 * 180.02562 * 5 3 2 7 7 C 1.39868 * 118.18758 * 180.02562 * 6 5 3 8 8 N 1.38512 * 120.51568 * 179.97438 * 7 6 5 9 9 C 1.47487 * 110.99793 * 275.97311 * 8 7 6 10 10 C 1.53518 * 87.92898 * 221.29522 * 9 8 7 11 11 O 1.42899 * 114.16889 * 272.37788 * 10 9 8 12 12 C 1.50696 * 114.17071 * 139.67004 * 10 9 8 13 13 H 1.08001 * 120.00306 * 266.15995 * 12 10 9 14 14 C 1.37875 * 119.99877 * 86.15619 * 12 10 9 15 15 N 1.31513 * 119.99945 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46890 * 90.00391 * 16 14 12 18 18 H 1.48496 * 109.47230 * 210.00097 * 16 14 12 19 19 H 1.48498 * 109.47377 * 330.00343 * 16 14 12 20 20 C 1.47476 * 110.99875 * 179.97438 * 8 7 6 21 21 N 1.32831 * 118.97378 * 359.97438 * 7 6 5 22 22 C 1.31847 * 120.91469 * 0.02562 * 21 7 6 23 23 N 1.31550 * 122.01955 * 359.71473 * 22 21 7 24 24 H 1.08999 * 109.47008 * 60.00031 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47465 * 300.00021 * 1 2 3 27 27 H 1.08005 * 120.90485 * 359.97438 * 6 5 3 28 28 H 1.08999 * 113.47307 * 336.05632 * 9 8 7 29 29 H 1.08996 * 113.47445 * 106.52802 * 9 8 7 30 30 H 0.96700 * 114.00030 * 273.84161 * 11 10 9 31 31 H 0.97007 * 119.99719 * 179.97438 * 15 14 12 32 32 H 1.08998 * 113.47696 * 253.46514 * 20 8 7 33 33 H 1.09000 * 113.48196 * 23.94214 * 20 8 7 34 34 H 1.08006 * 118.99273 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4020 2.2178 -0.0005 5 6 3.5447 1.2774 0.0006 6 6 4.1873 2.5111 0.0011 7 6 5.5859 2.5276 0.0011 8 7 6.2751 3.7290 0.0011 9 6 6.4138 4.2588 -1.3684 10 6 7.8548 4.6498 -1.0114 11 8 7.9799 5.9434 -0.4174 12 6 8.8531 4.3979 -2.1118 13 1 9.4072 3.4712 -2.1366 14 6 9.0591 5.3504 -3.0871 15 7 8.3847 6.4791 -3.0568 16 14 10.2971 5.0384 -4.4507 17 1 9.6187 4.3742 -5.5927 18 1 10.8735 6.3307 -4.9011 19 1 11.3830 4.1623 -3.9425 20 6 7.7324 3.5024 0.0017 21 7 6.2430 1.3732 0.0011 22 6 5.5950 0.2249 0.0006 23 7 4.2809 0.1656 0.0056 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.6217 3.4312 0.0007 28 1 6.3506 3.4909 -2.1394 29 1 5.7691 5.1141 -1.5704 30 1 8.0568 6.6643 -1.0573 31 1 8.5299 7.1494 -3.7428 32 1 8.2048 3.7170 0.9602 33 1 8.0212 2.5327 -0.4037 34 1 6.1605 -0.6953 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330816334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:37 Heat of formation + Delta-G solvation = -43.865720 kcal Electronic energy + Delta-G solvation = -21301.143483 eV Core-core repulsion = 17814.938065 eV Total energy + Delta-G solvation = -3486.205418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.84494 -41.60220 -40.56138 -37.77843 -36.68439 -34.62739 -34.12919 -33.26448 -29.74979 -29.10540 -27.24882 -27.00839 -25.74955 -24.59232 -22.40632 -20.74277 -19.98056 -19.44283 -18.59353 -17.98272 -17.69478 -17.22316 -16.90437 -16.68838 -16.60793 -16.21668 -15.72970 -15.39929 -14.85731 -14.68417 -14.37517 -14.02535 -13.73254 -13.41246 -13.11709 -12.85142 -12.70522 -12.35942 -12.27117 -12.21336 -12.18780 -11.92495 -11.82151 -11.34660 -11.14957 -10.72498 -10.64862 -10.28500 -9.88368 -8.29120 -6.46291 -0.91305 -0.33631 1.11274 1.22550 1.43799 1.47009 1.56931 2.34775 2.42124 2.58258 2.81484 2.92772 3.03267 3.47339 3.59851 3.89469 3.95399 4.06682 4.22577 4.25808 4.31218 4.38404 4.45409 4.68147 4.72993 4.85448 4.96956 4.99421 5.09210 5.31093 5.61069 5.71650 5.90544 6.01488 6.34664 6.59841 6.79898 7.27223 7.50333 8.76811 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.003973 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.826381 B = 7045.916625 C = 7119.431252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.336 6.336 3 C 0.531 3.469 4 O -0.506 6.506 5 C 0.148 3.852 6 C -0.165 4.165 7 C 0.324 3.676 8 N -0.435 5.435 9 C 0.009 3.991 10 C 0.227 3.773 11 O -0.579 6.579 12 C -0.555 4.555 13 H 0.071 0.929 14 C 0.030 3.970 15 N -0.917 5.917 16 Si 0.970 3.030 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.028 3.972 21 N -0.540 5.540 22 C 0.318 3.682 23 N -0.497 5.497 24 H 0.068 0.932 25 H 0.139 0.861 26 H 0.069 0.931 27 H 0.160 0.840 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.387 0.613 31 H 0.276 0.724 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 -12.706 3.206 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.250 6.250 3 C 0.373 3.627 4 O -0.394 6.394 5 C 0.003 3.997 6 C -0.190 4.190 7 C 0.083 3.917 8 N -0.155 5.155 9 C -0.118 4.118 10 C 0.186 3.814 11 O -0.391 6.391 12 C -0.593 4.593 13 H 0.089 0.911 14 C -0.171 4.171 15 N -0.558 5.558 16 Si 0.794 3.206 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.100 4.100 21 N -0.260 5.260 22 C 0.030 3.970 23 N -0.215 5.215 24 H 0.087 0.913 25 H 0.157 0.843 26 H 0.088 0.912 27 H 0.178 0.822 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.674 -13.014 4.198 17.347 hybrid contribution 0.093 0.959 -1.579 1.850 sum -10.581 -12.055 2.619 16.252 Atomic orbital electron populations 1.23774 0.73384 1.06483 1.03174 1.86653 1.25712 1.30071 1.82574 1.20548 0.87117 0.82313 0.72694 1.90864 1.65899 1.36899 1.45705 1.20295 0.91949 0.89742 0.97708 1.22406 0.94248 1.00141 1.02220 1.21127 0.91161 0.90868 0.88510 1.66286 1.09940 1.14924 1.24302 1.24671 1.02565 0.98795 0.85761 1.19677 0.89933 0.81935 0.89885 1.86037 1.95785 1.17782 1.39542 1.21755 1.24031 1.04144 1.09383 0.91096 1.25812 0.97025 0.94385 0.99840 1.69348 1.42037 1.08080 1.36355 0.85373 0.78899 0.77782 0.78516 1.19979 1.20557 1.19154 1.24072 0.85197 0.99937 1.00770 1.68482 1.42586 0.99260 1.15651 1.25750 0.86672 0.96381 0.88207 1.68512 1.08988 1.30149 1.13823 0.91316 0.84270 0.91194 0.82201 0.91456 0.90889 0.75753 0.91362 0.90500 0.87344 0.73674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.56 113.37 1.20 1.55 16 2 O -0.34 -7.75 10.42 -55.53 -0.58 -8.33 16 3 C 0.53 14.83 7.97 70.52 0.56 15.39 16 4 O -0.51 -15.73 16.20 20.17 0.33 -15.41 16 5 C 0.15 4.41 6.78 41.82 0.28 4.69 16 6 C -0.17 -5.44 9.65 22.87 0.22 -5.22 16 7 C 0.32 11.75 5.86 133.28 0.78 12.53 16 8 N -0.44 -18.06 6.43 -730.94 -4.70 -22.76 16 9 C 0.01 0.40 7.07 83.62 0.59 0.99 16 10 C 0.23 11.18 1.57 -11.18 -0.02 11.16 16 11 O -0.58 -30.65 13.54 -148.98 -2.02 -32.67 16 12 C -0.56 -28.49 8.69 25.60 0.22 -28.26 16 13 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 14 C 0.03 1.50 5.40 84.65 0.46 1.95 16 15 N -0.92 -47.52 11.02 21.45 0.24 -47.28 16 16 Si 0.97 40.06 29.54 68.60 2.03 42.09 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 C 0.03 1.20 6.81 83.64 0.57 1.77 16 21 N -0.54 -17.59 8.34 -197.65 -1.65 -19.24 16 22 C 0.32 8.17 12.27 180.94 2.22 10.39 16 23 N -0.50 -13.72 10.25 -189.45 -1.94 -15.66 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.14 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.16 5.23 7.73 -2.91 -0.02 5.20 16 28 H 0.07 3.00 7.85 -2.39 -0.02 2.98 16 29 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.39 20.90 6.33 -74.06 -0.47 20.43 16 31 H 0.28 13.51 8.31 -92.70 -0.77 12.74 16 32 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.11 4.46 6.65 -2.39 -0.02 4.44 16 34 H 0.25 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -60.27 303.12 -0.52 -60.79 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.68 Total: 31.51 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 7.09 Total: 26.95 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -8.05 Total: -104.93 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.27 Total: -56.40 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -60.27 -0.52 -60.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330816334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.926 kcal (2) G-P(sol) polarization free energy of solvation -60.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds